Prupe.1G158100_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
12546194 .. 12547101
908 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G158100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 819 bp
ATGGACTGTTTAGCAAGTGTTTTTGAAAAGGTTGGTATGGAGTCACTGCTCCTGAATATCCCTTTTGTGTGCAAGTCATGGTACAAAGCGAGTCTCAGTCCTTGCTGCTGGCTCAGTCTCGACTTCACGGAAATTTTAACCAAGTACTACTATACTTGGAGTGAAAGCCATGATCGCTTTGTGAAAAGATTTGTAGATCGTAGCAAAGGGCATGCTACTTTTCTCAGGCTACCTGGATGCTGTACCCTCGAAGCATTCAAATATGTTGCAGATGTGTGTCCTGGCCTCAAGGCTTCGTCTTTGCCTAGTGAACTAGTGTTTCTGCAACCTAGCATGATTATAGAACTGATTGAAAAGTGGGAAAATTTGGAGTCATTGTCATTGAAAAGTCGCATAAATATTGCTGAACTCCTTTCACCGATCAGCCTTCACTGCAAGAACTTTCGTCGTTTAGATATACATGGTGCTTCAGTAGGTGAAGATGCGGCGTTGTCGATCGTCAAATTGGTGCCTAATATTGAGCACTTAAGCTTGAGAGGGGCAAGAATTCCTCGGGGCAGTCTTATAACAATCTTACGGGGCTGTAAGAAGCTTGTGTGTTTGGATGTTAGCGGTGGTATAGGTTTTGATGAGGAAGACGAGGAAATATCAAAGCTTGCTTCTCATATTACTAATTTCAGCTGTCAGGGTTCTAGACCTAGACTTGACTATGATTATGATTCTGATTCCCATGATTATTATGATTCTGATGATGATTATGACGATGATGAGTATGCTGGCTCTGATGGGTACTACTGTAGTGGAGGCAGTTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

273

Amino Acids

30.55

Weight (kDa)

4.93

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 566
AccB1I GGYRCC 1 cut(s) 508
AciI CCGC 2 cut(s) 485, 612
AcsI RAATTY 3 cut(s) 132, 364, 546
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 4 cut(s) 83, 146, 244, 791
AflII CTTAAG 1 cut(s) 526
AgsI TTSAA 4 cut(s) 26, 259, 353, 385
AhlI ACTAGT 1 cut(s) 313
AjnI CCWGG 2 cut(s) 232, 280
AluBI AGCT 4 cut(s) 531, 592, 655, 681
AluI AGCT 4 cut(s) 531, 592, 655, 681
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 2 cut(s) 98, 122
Ama87I CYCGRG 1 cut(s) 552
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 105
ApoI RAATTY 3 cut(s) 132, 364, 546
AsuHPI GGTGA 2 cut(s) 408, 488
AvaI CYCGRG 1 cut(s) 552
BaeI ACNNNNGTAYC 2 cut(s) 781, 814
BanI GGYRCC 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 779
BciT130I CCWGG 2 cut(s) 234, 282
BcoDI GTCTC 2 cut(s) 98, 122
BcuI ACTAGT 1 cut(s) 313
BfaI CTAG 5 cut(s) 306, 314, 330, 693, 699
BfmI CTRYAG 1 cut(s) 796
BfrI CTTAAG 1 cut(s) 526
BisI GCNGC 2 cut(s) 106, 486
BlsI GCNGC 2 cut(s) 107, 487
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 234, 282
BmeT110I CYCGRG 1 cut(s) 552
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 2 cut(s) 234, 282
BmsI GCATC 2 cut(s) 227, 472
BpiI GAAGAC 1 cut(s) 642
BpuEI CTTGAG 2 cut(s) 272, 553
BsaJI CCNNGG 1 cut(s) 551
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
BseBI CCWGG 2 cut(s) 234, 282
BseDI CCNNGG 1 cut(s) 551
BseGI GGATG 2 cut(s) 242, 610
BseMII CTCAG 3 cut(s) 109, 127, 238
BseXI GCAGC 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 508
BsiEI CGRYCG 1 cut(s) 498
BsiHKAI GWGCWC 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 552
BsmAI GTCTC 2 cut(s) 98, 122
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 285
BsoBI CYCGRG 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 4 cut(s) 172, 196, 420, 495
BspACI CCGC 2 cut(s) 485, 612
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 3 cut(s) 108, 126, 237
BspLI GGNNCC 1 cut(s) 510
BspT107I GGYRCC 1 cut(s) 508
BspTI CTTAAG 1 cut(s) 526
BssECI CCNNGG 1 cut(s) 551
BssMI GATC 4 cut(s) 172, 196, 420, 495
Bst2UI CCWGG 2 cut(s) 234, 282
Bst4CI ACNGT 2 cut(s) 8, 797
BstAFI CTTAAG 1 cut(s) 526
BstC8I GCNNGC 4 cut(s) 110, 213, 657, 778
BstDEI CTNAG 3 cut(s) 95, 113, 224
BstF5I GGATG 2 cut(s) 242, 610
BstKTI GATC 4 cut(s) 175, 199, 423, 498
BstMAI GTCTC 2 cut(s) 98, 122
BstMBI GATC 4 cut(s) 172, 196, 420, 495
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 2 cut(s) 174, 432
BstNI CCWGG 2 cut(s) 234, 282
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 232, 280
BstSFI CTRYAG 1 cut(s) 796
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 642
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 2 cut(s) 242, 610
BtsI GCAGTG 2 cut(s) 44, 430
BtsIMutI CAGTG 2 cut(s) 44, 430
Cac8I GCNNGC 4 cut(s) 110, 213, 657, 778
Csp6I GTAC 4 cut(s) 82, 145, 243, 790
CviAII CATG 6 cut(s) 78, 170, 212, 334, 461, 731
CviQI GTAC 4 cut(s) 82, 145, 243, 790
DdeI CTNAG 3 cut(s) 95, 113, 224
DpnI GATC 4 cut(s) 174, 198, 422, 497
DpnII GATC 4 cut(s) 172, 196, 420, 495
Eco57I CTGAAG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 552
EcoRI GAATTC 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 232, 280
FaeI CATG 6 cut(s) 81, 173, 215, 337, 464, 734
FatI CATG 6 cut(s) 77, 169, 211, 333, 460, 730
Fnu4HI GCNGC 2 cut(s) 106, 486
FokI GGATG 2 cut(s) 249, 617
Fsp4HI GCNGC 2 cut(s) 106, 486
FspBI CTAG 5 cut(s) 306, 314, 330, 693, 699
GluI GCNGC 2 cut(s) 106, 486
HaeIII GGCC 1 cut(s) 285
Hin1II CATG 6 cut(s) 81, 173, 215, 337, 464, 734
HindIII AAGCTT 3 cut(s) 529, 590, 653
HinfI GANTC 6 cut(s) 41, 91, 371, 719, 725, 743
HphI GGTGA 2 cut(s) 408, 488
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 4 cut(s) 724, 748, 784, 814
Hpy188III TCNNGA 3 cut(s) 52, 119, 693
Hpy8I GTNNAC 1 cut(s) 311
Hpy99I CGWCG 1 cut(s) 450
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 2 cut(s) 8, 797
HpyCH4V TGCA 4 cut(s) 72, 269, 325, 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 432
HpyF3I CTNAG 3 cut(s) 95, 113, 224
Hsp92II CATG 6 cut(s) 81, 173, 215, 337, 464, 734
Kzo9I GATC 4 cut(s) 172, 196, 420, 495
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 9 cut(s) 65, 94, 211, 219, 246, 267, 294, 671, 762
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 227, 472
MaeI CTAG 5 cut(s) 306, 314, 330, 693, 699
MaeIII GTNAC 1 cut(s) 42
MalI GATC 4 cut(s) 174, 198, 422, 497
MboI GATC 4 cut(s) 172, 196, 420, 495
MboII GAAGA 2 cut(s) 491, 647
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 5 cut(s) 132, 364, 503, 546, 673
MlyI GAGTC 3 cut(s) 50, 100, 380
MnlI CCTC 7 cut(s) 257, 296, 530, 561, 625, 634, 797
MseI TTAA 2 cut(s) 137, 527
MspA1I CMGCKG 1 cut(s) 681
MspCI CTTAAG 1 cut(s) 526
MspR9I CCNGG 2 cut(s) 234, 282
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 2 cut(s) 234, 282
MwoI GCNNNNNNNGC 2 cut(s) 174, 432
NdeII GATC 4 cut(s) 172, 196, 420, 495
NlaIII CATG 6 cut(s) 81, 173, 215, 337, 464, 734
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 42
NspI RCATGY 1 cut(s) 215
PaeI GCATGC 1 cut(s) 215
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 3 cut(s) 719, 725, 743
PkrI GCNGC 2 cut(s) 107, 487
Ple19I CGATCG 1 cut(s) 498
PleI GAGTC 3 cut(s) 49, 99, 379
PpsI GAGTC 3 cut(s) 49, 99, 379
PsiI TTATAA 1 cut(s) 566
Psp6I CCWGG 2 cut(s) 232, 280
PspGI CCWGG 2 cut(s) 232, 280
PspN4I GGNNCC 1 cut(s) 510
PvuI CGATCG 1 cut(s) 498
PvuII CAGCTG 1 cut(s) 681
RsaI GTAC 4 cut(s) 83, 146, 244, 791
RsaNI GTAC 4 cut(s) 82, 145, 243, 790
SaqAI TTAA 2 cut(s) 137, 527
SatI GCNGC 2 cut(s) 106, 486
Sau3AI GATC 4 cut(s) 172, 196, 420, 495
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 3 cut(s) 50, 100, 380
ScrFI CCNGG 2 cut(s) 234, 282
SduI GDGCHC 1 cut(s) 525
SfaNI GCATC 2 cut(s) 227, 472
SfcI CTRYAG 1 cut(s) 796
SmlI CTYRAG 3 cut(s) 287, 526, 532
SmoI CTYRAG 3 cut(s) 287, 526, 532
SpeI ACTAGT 1 cut(s) 313
SphI GCATGC 1 cut(s) 215
Sse9I AATT 5 cut(s) 132, 364, 503, 546, 673
SsiI CCGC 2 cut(s) 485, 612
SspI AATATT 2 cut(s) 400, 517
SspMI CTAG 5 cut(s) 306, 314, 330, 693, 699
StyD4I CCNGG 2 cut(s) 232, 280
TaaI ACNGT 2 cut(s) 8, 797
TaqI TCGA 3 cut(s) 120, 249, 494
TasI AATT 5 cut(s) 132, 364, 503, 546, 673
TatI WGTACW 1 cut(s) 144
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 3 cut(s) 719, 725, 743
Tru1I TTAA 2 cut(s) 137, 527
Tru9I TTAA 2 cut(s) 137, 527
TscAI CASTG 2 cut(s) 51, 437
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 2 cut(s) 51, 437
Vha464I CTTAAG 1 cut(s) 526
XapI RAATTY 3 cut(s) 132, 364, 546
XbaI TCTAGA 1 cut(s) 692
XceI RCATGY 1 cut(s) 215
XspI CTAG 5 cut(s) 306, 314, 330, 693, 699
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.