Prupe.1G161900_v2.0.a1

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
12960338 .. 12961769
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G161900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 243 bp
ATGAATTTCAAGAGACTTTTAGTATCAGACATCAAAATTGACATCAAAATGGTCCCCAAGAAAAAGGAATTACTTGCTGCCATGGTGGCTGATGATGTGAACAAGAAGTTTGGAGAACAACTCTCGAGACTGACGGCGTTGATGTCCTCGTTGATTGGGCTTCAATGTGGCTGTCAAAGAGACAATCGGATCTGTGTGAACAATGTCGTCATCGGTTGGGCTTCACGTATAAAAAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

9.02

Weight (kDa)

9.88

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 4
AgsI TTSAA 2 cut(s) 10, 164
Alw26I GTCTC 3 cut(s) 7, 121, 174
AlwI GGATC 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 124
AvaII GGWCC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 150
BcoDI GTCTC 3 cut(s) 7, 121, 174
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BsaAI YACGTR 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 124
BslFI GGGAC 1 cut(s) 38
BsmAI GTCTC 3 cut(s) 7, 121, 174
BsmFI GGGAC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 124
Bsp143I GATC 1 cut(s) 189
Bsp19I CCATGG 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 227
BstDSI CCRYGG 1 cut(s) 81
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 3 cut(s) 7, 121, 174
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 1 cut(s) 82
CviJI RGCY 4 cut(s) 89, 160, 171, 221
CviKI_1 RGCY 4 cut(s) 89, 160, 171, 221
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 85
FaiI YATR 3 cut(s) 83, 230, 241
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 100, 199
Hpy188I TCNGA 2 cut(s) 28, 189
Hpy188III TCNNGA 3 cut(s) 10, 124, 126
Hpy8I GTNNAC 2 cut(s) 100, 199
HpyCH4IV ACGT 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 1 cut(s) 189
Lsp1109I GCAGC 1 cut(s) 64
MaeII ACGT 1 cut(s) 226
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MflI RGATCY 1 cut(s) 189
MluCI AATT 3 cut(s) 4, 36, 68
MnlI CCTC 1 cut(s) 157
MslI CAYNNNNRTG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 86
NcoI CCATGG 1 cut(s) 81
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 124
PkrI GCNGC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 52
SetI ASST 1 cut(s) 229
Sfr274I CTCGAG 1 cut(s) 124
SgeI CNNG 9 cut(s) 22, 70, 86, 94, 115, 136, 138, 160, 237
SinI GGWCC 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 3 cut(s) 4, 36, 68
StyI CCWWGG 1 cut(s) 81
TaiI ACGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 125
TasI AATT 3 cut(s) 4, 36, 68
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 4
XhoI CTCGAG 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.