Prupe.1G166500_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
13525288 .. 13528236
2949 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G166500.1_v2.0.a1.CDS.5

Sequence Viewer

Length: 1881 bp
ATGCTGGCTTGTGTTGGCTTACACCCGGAAGTCGGTACACTGAGTGTTGTTATCAATTGCTTGTGCCGTATGAATCGGGTGGACTTGGGTTTCTCTGTTTTAGCAACTATCCTTAAACATGGTCTTCAGCCCAATGCTTATACTTTGAATGCTTTGCTTCATGGGGTTTGCAAGTATAGGTCGCTCTCTGAGGCAATGGATTTGTTCCAGAAAATAGAAGAGAAAGGATTAGCATGCAGTGAAATCACTTACGCTACTATAATTAATGGGTTGTCCAGAGCTGGGAAAACATGTATGGCGCTTGAGATACTCGAGCAAATGTATGAAGATGGAAGGTTTAAGCCTGTCCCTCATTGCTATAATCCAATCATTGACCGCTTACGCAAAGAAAGAAGAATAGATGAGGCGCTGACCCTATTTCGAGATATGATCAACAAAAGTGTTGTGCCGGATAAATTCAGTTACACTTCATTAATTTATGGATTATGCAACATGGGTCTTTGGACACGAGCACTTGCTCTGTTTGAAATAATGAAAAACAAAGGCATAAAGCCCAATGTTTTCCATTTCAATTCCTTAATTGATGCTTCATGCAAGTCGGGTAATTCTGTGTTGGATGCTTTGGGCAAGGAAGGGAAGACGGCAGAGGCACTTAACCTTGTGGAAGAAATGTTCCGTAGAGGTGTAAAGCCTAATGTCGTCACCTACAGCTCCTTAATTAATAGCCTCTGCCATTCCGCGCAATGGAAAGAAGCCACAAGGTTGTTTAATAGAATGCTGGATGAAGGAATTGCACCAAATGTTGTAACCTTTACCACTGTAATACATGCTCTTTGCAAGGAGAGACGGATCGAGGAAGCGCTCTCCGTGTTAGAGCTAATGCCCCAAAGAGGTATGAGGCTTAACATATTCACTTACAACTCTCTAATTTATGGCATGTGCCGTACATATCAATGGGCTGAAGCCACAAGGTTGTTTGATGAAATGGCAAAGAAGGTCATTGATTTAATGGTGATAAAAGATCGTGTCCCTGATATTGCTTCTTGCTATAAAGCCTTGGTCAACGGCTATATGCAAGCTAAAAGGACAGGTGAAGCTTTGAGGCTCGTTGAGGAAATGATCGAACAAGGGGTGATGCCTGATTTGGAAACCCTAAAGGCTTTGAGAGGTTTGCGTCCTAAAAGGCATGTTCTTATGCAAAGAAAGACGAGTAGACCGGGCTGTGATCCTATTTTGAGATATGGTCTTTGGAAGCGAGCACTTGCTCTGTTTGAAATAATGAATGAGAACGGCATAATTCCAGATGCTGTCACTTTTACTTCCTTAATTTCTGCAGCGTGCAAGTCTGGAAAATGGGAAGAAGCTGTGCGGCTATTTAGAAACTTGATTGATTCAATCCGGGGGCAAGCTTATGAAGCAGTGCCAAGCTTCAAGCAACTGCAACCTCCAGGGGATTCACACACTAGAAGATCAACTTTCGACTCGTTTCTGACGGGCTGCATTCCGGTTTTCTTTCATCCTGCAACTGCGTATACGCAGTATTTGTGGCATTTACCGCAGAATCATACCAAATATTCGGTGTTCATTCCGGTGAAAGAAGTTGAAGATTTGAAAGAAGGCATCATTGAGAAAACTTTGCTTGGAATTTCAAAGCATGAGGAATTGGCCATGAGGGATGAGGTTATAAGGCTAATACCAAATCTGGTATATGCAGATCCCAGGTCAAGATTAGAGACCGAAGATGCATTCGATTTAGCTGTACAGGGAATTCTTGAGAGGATAGAGAATGTTAGGGAGGTTATTAGAGAGAGGAAGGATCCTGGTATTGGTTTTGCAGATGAGGATAATTTTAAGTTTACATTTCCTGAGACACCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

627

Amino Acids

71.18

Weight (kDa)

8.21

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1685
AccI GTMKAC 2 cut(s) 1213, 1532
AccII CGCG 1 cut(s) 740
AciI CCGC 4 cut(s) 376, 738, 1369, 1556
AclWI GGATC 5 cut(s) 857, 1220, 1709, 1811, 1824
AcoI YGGCCR 1 cut(s) 1665
AcsI RAATTY 3 cut(s) 455, 1644, 1767
AcuI CTGAAG 2 cut(s) 110, 981
AdeI CACNNNGTG 1 cut(s) 44
AfaI GTAC 3 cut(s) 37, 946, 1761
AfeI AGCGCT 1 cut(s) 861
AfiI CCNNNNNNNGG 5 cut(s) 32, 282, 744, 890, 1826
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 9 cut(s) 148, 527, 571, 1274, 1395, 1432, 1604, 1612, 1650
AjnI CCWGG 3 cut(s) 1447, 1718, 1819
AloI GAACNNNNNNTCC 2 cut(s) 656, 688
AluBI AGCT 9 cut(s) 281, 711, 877, 1079, 1097, 1364, 1409, 1428, 1757
AluI AGCT 9 cut(s) 281, 711, 877, 1079, 1097, 1364, 1409, 1428, 1757
Alw21I GWGCWC 2 cut(s) 514, 1261
Alw26I GTCTC 3 cut(s) 838, 1727, 1862
AlwI GGATC 5 cut(s) 857, 1220, 1709, 1811, 1824
AlwNI CAGNNNCTG 1 cut(s) 1307
Ama87I CYCGRG 1 cut(s) 311
Aor51HI AGCGCT 1 cut(s) 861
AoxI GGCC 1 cut(s) 1665
ApeKI GCWGC 2 cut(s) 1334, 1497
ApoI RAATTY 3 cut(s) 455, 1644, 1767
AseI ATTAAT 3 cut(s) 264, 473, 720
AspLEI GCGC 4 cut(s) 301, 409, 742, 862
AsuC2I CCSGG 3 cut(s) 26, 1218, 1400
AsuHPI GGTGA 5 cut(s) 694, 1024, 1103, 1144, 1603
AvaI CYCGRG 1 cut(s) 311
BalI TGGCCA 1 cut(s) 1667
BamHI GGATCC 1 cut(s) 1816
BauI CACGAG 1 cut(s) 507
BbsI GAAGAC 2 cut(s) 116, 644
Bbv12I GWGCWC 2 cut(s) 514, 1261
BbvI GCAGC 2 cut(s) 1346, 1484
BccI CCATC 1 cut(s) 323
BceAI ACGGC 5 cut(s) 51, 657, 927, 1081, 1306
BciT130I CCWGG 3 cut(s) 1449, 1720, 1821
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 3 cut(s) 26, 1218, 1400
BcoDI GTCTC 3 cut(s) 838, 1727, 1862
BfaI CTAG 1 cut(s) 1464
BfmI CTRYAG 2 cut(s) 706, 1332
BfoI RGCGCY 3 cut(s) 302, 410, 863
BisI GCNGC 3 cut(s) 1335, 1370, 1498
BlsI GCNGC 3 cut(s) 1336, 1371, 1499
Bme1390I CCNGG 6 cut(s) 26, 1218, 1400, 1449, 1720, 1821
BmeT110I CYCGRG 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 1818
BmrFI CCNGG 6 cut(s) 26, 1218, 1400, 1449, 1720, 1821
BmsI GCATC 6 cut(s) 574, 607, 1125, 1294, 1629, 1732
BpiI GAAGAC 2 cut(s) 116, 644
BpmI CTGGAG 1 cut(s) 1431
BpuEI CTTGAG 2 cut(s) 323, 1793
BpuMI CCSGG 3 cut(s) 26, 1218, 1400
BsaI GGTCTC 1 cut(s) 1727
BsaJI CCNNGG 4 cut(s) 1056, 1399, 1448, 1718
BsaWI WCCGGW 2 cut(s) 1504, 1588
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 282, 744, 890, 1826
Bse3DI GCAATG 3 cut(s) 201, 352, 749
BseBI CCWGG 3 cut(s) 1449, 1720, 1821
BseDI CCNNGG 4 cut(s) 1056, 1399, 1448, 1718
BseGI GGATG 4 cut(s) 622, 787, 1516, 1681
BseLI CCNNNNNNNGG 5 cut(s) 32, 282, 744, 890, 1826
BseMI GCAATG 3 cut(s) 201, 352, 749
BseMII CTCAG 3 cut(s) 32, 180, 1857
BseXI GCAGC 2 cut(s) 1346, 1484
BseYI CCCAGC 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 740
BshFI GGCC 1 cut(s) 1667
BsiHKAI GWGCWC 2 cut(s) 514, 1261
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 6 cut(s) 26, 449, 1217, 1399, 1505, 1589
BslFI GGGAC 2 cut(s) 332, 1013
BslI CCNNNNNNNGG 5 cut(s) 32, 282, 744, 890, 1826
BsmAI GTCTC 3 cut(s) 838, 1727, 1862
BsmBI CGTCTC 1 cut(s) 838
BsmFI GGGAC 2 cut(s) 332, 1013
BsmI GAATGC 4 cut(s) 154, 780, 1500, 1745
BsnI GGCC 1 cut(s) 1667
Bso31I GGTCTC 1 cut(s) 1727
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 514, 1261
Bsp1407I TGTACA 1 cut(s) 1759
Bsp143I GATC 8 cut(s) 429, 849, 1021, 1119, 1225, 1469, 1714, 1816
BspACI CCGC 4 cut(s) 376, 738, 1369, 1556
BspANI GGCC 1 cut(s) 1667
BspCNI CTCAG 3 cut(s) 33, 181, 1858
BspFNI CGCG 1 cut(s) 740
BspLI GGNNCC 1 cut(s) 1818
BspMAI CTGCAG 1 cut(s) 1336
BspPI GGATC 5 cut(s) 857, 1220, 1709, 1811, 1824
BspTNI GGTCTC 1 cut(s) 1727
BsrDI GCAATG 3 cut(s) 201, 352, 749
BsrGI TGTACA 1 cut(s) 1759
BssECI CCNNGG 4 cut(s) 1056, 1399, 1448, 1718
BssMI GATC 8 cut(s) 429, 849, 1021, 1119, 1225, 1469, 1714, 1816
BssNAI GTATAC 1 cut(s) 1533
BssSI CACGAG 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 1056
Bst1107I GTATAC 1 cut(s) 1533
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 3 cut(s) 1449, 1720, 1821
Bst4CI ACNGT 1 cut(s) 820
Bst6I CTCTTC 1 cut(s) 213
BstAUI TGTACA 1 cut(s) 1759
BstC8I GCNNGC 6 cut(s) 6, 235, 1077, 1257, 1339, 1407
BstDEI CTNAG 3 cut(s) 41, 189, 1866
BstF5I GGATG 4 cut(s) 622, 787, 1516, 1681
BstFNI CGCG 1 cut(s) 740
BstH2I RGCGCY 3 cut(s) 302, 410, 863
BstHHI GCGC 4 cut(s) 301, 409, 742, 862
BstKTI GATC 8 cut(s) 432, 852, 1024, 1122, 1228, 1472, 1717, 1819
BstMAI GTCTC 3 cut(s) 838, 1727, 1862
BstMBI GATC 8 cut(s) 429, 849, 1021, 1119, 1225, 1469, 1714, 1816
BstMWI GCNNNNNNNGC 2 cut(s) 1415, 1555
BstNI CCWGG 3 cut(s) 1449, 1720, 1821
BstNSI RCATGY 5 cut(s) 237, 294, 830, 940, 1190
BstSCI CCNGG 6 cut(s) 24, 1216, 1398, 1447, 1718, 1819
BstSFI CTRYAG 2 cut(s) 706, 1332
BstUI CGCG 1 cut(s) 740
BstV1I GCAGC 2 cut(s) 1346, 1484
BstV2I GAAGAC 2 cut(s) 116, 644
BstX2I RGATCY 2 cut(s) 1714, 1816
BstYI RGATCY 2 cut(s) 1714, 1816
BstZ17I GTATAC 1 cut(s) 1533
BsuRI GGCC 1 cut(s) 1667
BtsCI GGATG 4 cut(s) 622, 787, 1516, 1681
BtsI GCAGTG 2 cut(s) 244, 1425
BtsIMutI CAGTG 4 cut(s) 38, 244, 816, 1425
Cac8I GCNNGC 6 cut(s) 6, 235, 1077, 1257, 1339, 1407
CaiI CAGNNNCTG 1 cut(s) 1307
CfoI GCGC 4 cut(s) 301, 409, 742, 862
CseI GACGC 1 cut(s) 1163
Csp6I GTAC 3 cut(s) 36, 945, 1760
CviQI GTAC 3 cut(s) 36, 945, 1760
DdeI CTNAG 3 cut(s) 41, 189, 1866
DpnI GATC 8 cut(s) 431, 851, 1023, 1121, 1227, 1471, 1716, 1818
DpnII GATC 8 cut(s) 429, 849, 1021, 1119, 1225, 1469, 1714, 1816
DraIII CACNNNGTG 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 1665
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 1056
Eco31I GGTCTC 1 cut(s) 1727
Eco47III AGCGCT 1 cut(s) 861
Eco57I CTGAAG 2 cut(s) 110, 981
Eco88I CYCGRG 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 1767
EcoRII CCWGG 3 cut(s) 1447, 1718, 1819
EcoT14I CCWWGG 1 cut(s) 1056
EcoT22I ATGCAT 1 cut(s) 1747
ErhI CCWWGG 1 cut(s) 1056
Esp3I CGTCTC 1 cut(s) 838
FalI AAGNNNNNCTT 2 cut(s) 1459, 1491
FaqI GGGAC 2 cut(s) 332, 1013
FbaI TGATCA 1 cut(s) 429
FblI GTMKAC 2 cut(s) 1213, 1532
Fnu4HI GCNGC 3 cut(s) 1335, 1370, 1498
FokI GGATG 4 cut(s) 629, 794, 1503, 1688
Fsp4HI GCNGC 3 cut(s) 1335, 1370, 1498
FspBI CTAG 1 cut(s) 1464
GlaI GCGC 4 cut(s) 300, 408, 741, 861
GluI GCNGC 3 cut(s) 1335, 1370, 1498
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 1431
HaeII RGCGCY 3 cut(s) 302, 410, 863
HaeIII GGCC 1 cut(s) 1667
HapII CCGG 6 cut(s) 26, 449, 1217, 1399, 1505, 1589
HgaI GACGC 1 cut(s) 1163
HhaI GCGC 4 cut(s) 301, 409, 742, 862
Hin6I GCGC 4 cut(s) 299, 407, 740, 860
HinP1I GCGC 4 cut(s) 299, 407, 740, 860
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HindIII AAGCTT 3 cut(s) 1095, 1407, 1426
HinfI GANTC 5 cut(s) 73, 1391, 1454, 1481, 1561
HpaII CCGG 6 cut(s) 26, 449, 1217, 1399, 1505, 1589
HphI GGTGA 5 cut(s) 694, 1024, 1103, 1144, 1603
Hpy166II GTNNAC 6 cut(s) 38, 82, 1063, 1214, 1533, 1857
Hpy188I TCNGA 2 cut(s) 190, 1491
Hpy188III TCNNGA 8 cut(s) 208, 276, 422, 1301, 1347, 1725, 1772, 1865
Hpy8I GTNNAC 6 cut(s) 38, 82, 1063, 1214, 1533, 1857
HpyAV CCTTC 6 cut(s) 327, 626, 779, 988, 1610, 1807
HpyCH4III ACNGT 1 cut(s) 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 1415, 1555
HpyF3I CTNAG 3 cut(s) 41, 189, 1866
HspAI GCGC 4 cut(s) 299, 407, 740, 860
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 8 cut(s) 429, 849, 1021, 1119, 1225, 1469, 1714, 1816
LmnI GCTCC 1 cut(s) 716
Lsp1109I GCAGC 2 cut(s) 1346, 1484
LweI GCATC 6 cut(s) 574, 607, 1125, 1294, 1629, 1732
MaeI CTAG 1 cut(s) 1464
MaeIII GTNAC 4 cut(s) 461, 700, 805, 1309
MalI GATC 8 cut(s) 431, 851, 1023, 1121, 1227, 1471, 1716, 1818
MboI GATC 8 cut(s) 429, 849, 1021, 1119, 1225, 1469, 1714, 1816
MfeI CAATTG 1 cut(s) 55
MflI RGATCY 2 cut(s) 1714, 1816
MhlI GDGCHC 2 cut(s) 514, 1261
MlsI TGGCCA 1 cut(s) 1667
MluNI TGGCCA 1 cut(s) 1667
MlyI GAGTC 1 cut(s) 1475
MmeI TCCRAC 1 cut(s) 594
Mox20I TGGCCA 1 cut(s) 1667
Mph1103I ATGCAT 1 cut(s) 1747
MscI TGGCCA 1 cut(s) 1667
MslI CAYNNNNRTG 2 cut(s) 952, 1589
Msp20I TGGCCA 1 cut(s) 1667
MspI CCGG 6 cut(s) 26, 449, 1217, 1399, 1505, 1589
MspR9I CCNGG 6 cut(s) 26, 1218, 1400, 1449, 1720, 1821
MunI CAATTG 1 cut(s) 55
Mva1269I GAATGC 4 cut(s) 154, 780, 1500, 1745
MvaI CCWGG 3 cut(s) 1449, 1720, 1821
MvnI CGCG 1 cut(s) 740
MwoI GCNNNNNNNGC 2 cut(s) 1415, 1555
NciI CCSGG 3 cut(s) 26, 1218, 1400
NdeII GATC 8 cut(s) 429, 849, 1021, 1119, 1225, 1469, 1714, 1816
NlaIV GGNNCC 1 cut(s) 1818
NmuCI GTSAC 2 cut(s) 700, 1309
NsiI ATGCAT 1 cut(s) 1747
NspI RCATGY 5 cut(s) 237, 294, 830, 940, 1190
PacI TTAATTAA 1 cut(s) 720
PaeI GCATGC 1 cut(s) 237
PaeR7I CTCGAG 1 cut(s) 311
PciI ACATGT 1 cut(s) 290
PctI GAATGC 4 cut(s) 154, 780, 1500, 1745
PfeI GAWTC 4 cut(s) 73, 1391, 1454, 1561
PkrI GCNGC 3 cut(s) 1336, 1371, 1499
PleI GAGTC 1 cut(s) 1475
PpsI GAGTC 1 cut(s) 1475
PscI ACATGT 1 cut(s) 290
PshBI ATTAAT 3 cut(s) 264, 473, 720
PsiI TTATAA 1 cut(s) 1685
Psp6I CCWGG 3 cut(s) 1447, 1718, 1819
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 3 cut(s) 1447, 1718, 1819
PspN4I GGNNCC 1 cut(s) 1818
PspXI VCTCGAGB 1 cut(s) 311
PstI CTGCAG 1 cut(s) 1336
PstNI CAGNNNCTG 1 cut(s) 1307
PsuI RGATCY 2 cut(s) 1714, 1816
RsaI GTAC 3 cut(s) 37, 946, 1761
RsaNI GTAC 3 cut(s) 36, 945, 1760
RseI CAYNNNNRTG 2 cut(s) 952, 1589
SatI GCNGC 3 cut(s) 1335, 1370, 1498
Sau3AI GATC 8 cut(s) 429, 849, 1021, 1119, 1225, 1469, 1714, 1816
SchI GAGTC 1 cut(s) 1475
ScrFI CCNGG 6 cut(s) 26, 1218, 1400, 1449, 1720, 1821
SduI GDGCHC 2 cut(s) 514, 1261
SfaNI GCATC 6 cut(s) 574, 607, 1125, 1294, 1629, 1732
SfcI CTRYAG 2 cut(s) 706, 1332
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmiMI CAYNNNNRTG 2 cut(s) 952, 1589
SmlI CTYRAG 3 cut(s) 302, 311, 1772
SmoI CTYRAG 3 cut(s) 302, 311, 1772
SphI GCATGC 1 cut(s) 237
SsiI CCGC 4 cut(s) 376, 738, 1369, 1556
SspI AATATT 1 cut(s) 1574
SspMI CTAG 1 cut(s) 1464
StyD4I CCNGG 6 cut(s) 24, 1216, 1398, 1447, 1718, 1819
StyI CCWWGG 1 cut(s) 1056
TaaI ACNGT 1 cut(s) 820
TaqI TCGA 6 cut(s) 312, 421, 852, 1122, 1479, 1749
TaqII GACCGA 1 cut(s) 1751
TatI WGTACW 1 cut(s) 1759
TauI GCSGC 1 cut(s) 1372
TfiI GAWTC 4 cut(s) 73, 1391, 1454, 1561
TscAI CASTG 4 cut(s) 45, 244, 823, 1425
TseFI GTSAC 2 cut(s) 700, 1309
TseI GCWGC 2 cut(s) 1334, 1497
Tsp45I GTSAC 2 cut(s) 700, 1309
TspGWI ACGGA 3 cut(s) 665, 856, 862
TspRI CASTG 4 cut(s) 45, 244, 823, 1425
VspI ATTAAT 3 cut(s) 264, 473, 720
XapI RAATTY 3 cut(s) 455, 1644, 1767
XceI RCATGY 5 cut(s) 237, 294, 830, 940, 1190
XhoI CTCGAG 1 cut(s) 311
XmiI GTMKAC 2 cut(s) 1213, 1532
XspI CTAG 1 cut(s) 1464
Zsp2I ATGCAT 1 cut(s) 1747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.