Prupe.1G170900_v2.0.a1

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
14165888 .. 14167282
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G170900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 672 bp
ATGAGGCTTGAAGATTTGAAGCTTAATCTGAATTCTTTGAACAATCGCAACCACAATGTCTCTGCAAAACCCAATCCCCGTTCTTTCAAGCGTCCAAGTTCCTCCGATTATGATTACGATTCCAATTCCCATCCCCATCCAGTTAGGGTTTTGAGTCAGCAAACGAAGAGGAGGGTGAAGAGGCTGAGGCAGATGCCTAAGGCTAAAGATATTGATGAAGAAGATAATGGCGGGTTGGCGCCCTTGAAGGCAGTTTTTAATCATGGAGTTTCTGAGGTTTCTTCTAGTAATTTCAGTAGCTGCAAATCGCCAGTGACAGTACTCCATCATGCCTCTCCTGTCAACGCCACAACATCCGATGAGATTAATCTGTCGCCACGAAGGGCTGCTCGGGTTGCAATGCTGAAGGCACGGTTTGCAGGTACCATCTTCAAAGCCAAACAAGAGGTTCTTTACAGTGGCTCTAATGGTCTTGAAAACACCGAAGATGAGATCAGGAAGTTTAGGGCTGCCGAGATGATGAAAGCCAATGAGTACATCAAGGAGCAACGGCAACGAGATAGAGAAGCGGCTCGGCTTGCCCTCGAAGAGATGGAGAGAAATGTTGTCATTGATGATAACTTCAAAACGATGAGAGACTTTGAGATGTTAATTTCTGGCGCCAATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

224

Amino Acids

25.33

Weight (kDa)

9.46

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 410
Acc65I GGTACC 1 cut(s) 422
AccB1I GGYRCC 3 cut(s) 238, 422, 659
AciI CCGC 2 cut(s) 231, 569
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 425
AcyI GRCGYC 2 cut(s) 239, 660
AfaI GTAC 3 cut(s) 321, 424, 536
AgsI TTSAA 8 cut(s) 11, 19, 40, 88, 247, 433, 476, 625
AluBI AGCT 2 cut(s) 22, 300
AluI AGCT 2 cut(s) 22, 300
Alw26I GTCTC 2 cut(s) 64, 630
AlwNI CAGNNNCTG 1 cut(s) 300
Ama87I CYCGRG 1 cut(s) 390
ApeKI GCWGC 3 cut(s) 300, 386, 509
ApoI RAATTY 1 cut(s) 31
AseI ATTAAT 1 cut(s) 366
Asp718I GGTACC 1 cut(s) 422
AspLEI GCGC 2 cut(s) 241, 662
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 390
AxyI CCTNAGG 1 cut(s) 198
BanI GGYRCC 3 cut(s) 238, 422, 659
BbvCI CCTCAGC 1 cut(s) 185
BbvI GCAGC 3 cut(s) 287, 373, 496
BccI CCATC 5 cut(s) 138, 144, 333, 434, 586
BceAI ACGGC 1 cut(s) 566
BcoDI GTCTC 2 cut(s) 64, 630
BfaI CTAG 2 cut(s) 285, 670
BfoI RGCGCY 2 cut(s) 242, 663
BfuAI ACCTGC 1 cut(s) 410
BisI GCNGC 4 cut(s) 301, 387, 510, 570
BlsI GCNGC 4 cut(s) 302, 388, 511, 571
BmcAI AGTACT 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 390
BmiI GGNNCC 3 cut(s) 240, 424, 661
BmsI GCATC 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 185
BsaHI GRCGYC 2 cut(s) 239, 660
Bse1I ACTGG 2 cut(s) 140, 311
Bse21I CCTNAGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 405
BseGI GGATG 3 cut(s) 130, 136, 353
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 176, 264
BseNI ACTGG 2 cut(s) 140, 311
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 3 cut(s) 287, 373, 496
BshNI GGYRCC 3 cut(s) 238, 422, 659
BsiHKCI CYCGRG 1 cut(s) 390
BsmAI GTCTC 2 cut(s) 64, 630
BsoBI CYCGRG 1 cut(s) 390
Bsp143I GATC 1 cut(s) 492
BspACI CCGC 2 cut(s) 231, 569
BspCNI CTCAG 2 cut(s) 177, 265
BspLI GGNNCC 3 cut(s) 240, 424, 661
BspMI ACCTGC 1 cut(s) 410
BspT107I GGYRCC 3 cut(s) 238, 422, 659
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 2 cut(s) 140, 311
BssMI GATC 1 cut(s) 492
BssNI GRCGYC 2 cut(s) 239, 660
Bst4CI ACNGT 3 cut(s) 319, 414, 458
Bst6I CTCTTC 3 cut(s) 161, 173, 582
BstACI GRCGYC 2 cut(s) 239, 660
BstAPI GCANNNNNTGC 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 3 cut(s) 185, 198, 273
BstF5I GGATG 3 cut(s) 130, 136, 353
BstH2I RGCGCY 2 cut(s) 242, 663
BstHHI GCGC 2 cut(s) 241, 662
BstKTI GATC 1 cut(s) 495
BstMAI GTCTC 2 cut(s) 64, 630
BstMBI GATC 1 cut(s) 492
BstMWI GCNNNNNNNGC 4 cut(s) 395, 416, 578, 666
BstV1I GCAGC 3 cut(s) 287, 373, 496
Bsu36I CCTNAGG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 130, 136, 353
BtsIMutI CAGTG 2 cut(s) 318, 463
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 579
CaiI CAGNNNCTG 1 cut(s) 300
CfoI GCGC 2 cut(s) 241, 662
CseI GACGC 1 cut(s) 80
Csp6I GTAC 3 cut(s) 320, 423, 535
CviAII CATG 2 cut(s) 263, 329
CviQI GTAC 3 cut(s) 320, 423, 535
DdeI CTNAG 3 cut(s) 185, 198, 273
DinI GGCGCC 2 cut(s) 240, 661
DpnI GATC 1 cut(s) 494
DpnII GATC 1 cut(s) 492
Eam1104I CTCTTC 3 cut(s) 161, 173, 582
EarI CTCTTC 3 cut(s) 161, 173, 582
Eco57I CTGAAG 1 cut(s) 425
Eco81I CCTNAGG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 31
EgeI GGCGCC 2 cut(s) 240, 661
EheI GGCGCC 2 cut(s) 240, 661
FaeI CATG 2 cut(s) 266, 332
FaiI YATR 3 cut(s) 111, 264, 330
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FatI CATG 2 cut(s) 262, 328
FauI CCCGC 1 cut(s) 224
Fnu4HI GCNGC 4 cut(s) 301, 387, 510, 570
FokI GGATG 3 cut(s) 117, 123, 340
Fsp4HI GCNGC 4 cut(s) 301, 387, 510, 570
FspBI CTAG 2 cut(s) 285, 670
GlaI GCGC 2 cut(s) 240, 661
GluI GCNGC 4 cut(s) 301, 387, 510, 570
HaeII RGCGCY 2 cut(s) 242, 663
HgaI GACGC 1 cut(s) 80
HhaI GCGC 2 cut(s) 241, 662
Hin1I GRCGYC 2 cut(s) 239, 660
Hin1II CATG 2 cut(s) 266, 332
Hin6I GCGC 2 cut(s) 239, 660
HinP1I GCGC 2 cut(s) 239, 660
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 2 cut(s) 119, 154
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 4 cut(s) 30, 106, 274, 358
Hpy188III TCNNGA 2 cut(s) 473, 496
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 3 cut(s) 241, 375, 400
HpyCH4III ACNGT 3 cut(s) 319, 414, 458
HpyCH4V TGCA 4 cut(s) 65, 303, 398, 419
HpyF10VI GCNNNNNNNGC 4 cut(s) 395, 416, 578, 666
HpyF3I CTNAG 3 cut(s) 185, 198, 273
Hsp92I GRCGYC 2 cut(s) 239, 660
Hsp92II CATG 2 cut(s) 266, 332
HspAI GCGC 2 cut(s) 239, 660
KasI GGCGCC 2 cut(s) 238, 659
KpnI GGTACC 1 cut(s) 426
Kzo9I GATC 1 cut(s) 492
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 6 cut(s) 153, 324, 351, 405, 481, 642
Lsp1109I GCAGC 3 cut(s) 287, 373, 496
LweI GCATC 1 cut(s) 183
MaeI CTAG 2 cut(s) 285, 670
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 494
MboI GATC 1 cut(s) 492
MboII GAAGA 9 cut(s) 23, 178, 190, 230, 233, 273, 421, 497, 599
MfeI CAATTG 1 cut(s) 664
MluCI AATT 5 cut(s) 31, 124, 289, 651, 664
Mly113I GGCGCC 2 cut(s) 239, 660
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 9 cut(s) 112, 162, 165, 174, 180, 268, 343, 439, 593
MseI TTAA 4 cut(s) 24, 258, 366, 650
MunI CAATTG 1 cut(s) 664
MwoI GCNNNNNNNGC 4 cut(s) 395, 416, 578, 666
NarI GGCGCC 2 cut(s) 239, 660
NdeII GATC 1 cut(s) 492
NlaIII CATG 2 cut(s) 266, 332
NlaIV GGNNCC 3 cut(s) 240, 424, 661
NmeAIII GCCGAG 2 cut(s) 538, 553
NmuCI GTSAC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 4 cut(s) 302, 388, 511, 571
PleI GAGTC 1 cut(s) 162
PluTI GGCGCC 2 cut(s) 242, 663
PpsI GAGTC 1 cut(s) 162
PshBI ATTAAT 1 cut(s) 366
PspN4I GGNNCC 3 cut(s) 240, 424, 661
PstNI CAGNNNCTG 1 cut(s) 300
RsaI GTAC 3 cut(s) 321, 424, 536
RsaNI GTAC 3 cut(s) 320, 423, 535
SaqAI TTAA 4 cut(s) 24, 258, 366, 650
SatI GCNGC 4 cut(s) 301, 387, 510, 570
Sau3AI GATC 1 cut(s) 492
ScaI AGTACT 1 cut(s) 321
SchI GAGTC 1 cut(s) 163
SetI ASST 5 cut(s) 24, 279, 302, 424, 450
SfaNI GCATC 1 cut(s) 183
SfoI GGCGCC 2 cut(s) 240, 661
Sse9I AATT 5 cut(s) 31, 124, 289, 651, 664
SsiI CCGC 2 cut(s) 231, 569
SspDI GGCGCC 2 cut(s) 238, 659
SspMI CTAG 2 cut(s) 285, 670
TaaI ACNGT 3 cut(s) 319, 414, 458
TaqI TCGA 1 cut(s) 585
TasI AATT 5 cut(s) 31, 124, 289, 651, 664
TatI WGTACW 2 cut(s) 319, 534
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 4 cut(s) 24, 258, 366, 650
Tru9I TTAA 4 cut(s) 24, 258, 366, 650
TscAI CASTG 2 cut(s) 318, 463
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 3 cut(s) 300, 386, 509
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 231, 536
TspRI CASTG 2 cut(s) 318, 463
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 1 cut(s) 31
XspI CTAG 2 cut(s) 285, 670
ZrmI AGTACT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.