Prupe.1G171800_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
14302152 .. 14303077
926 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G171800.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 483 bp
ATGTTAACCGTGTACGAGAGAGTCAAGAAGAGGCGCATCACACGGAGACCTTTGCTAGTAAATTACTATGGTACTAAAAGAACAGCTGAAGCACTTATTCCACTCCTCCAGTTATCCGATTCACCAAGAATTGTTAACGTTTCTTCCTCCGCGGGGAAGTTAGTGAACATACCAAAAGAGAGAGTAGATGAGGTATTGACACAGCTACTAAAAGACTTCAAGGAGGGTTTTATTGAAAGCAAGGGCTGGCCTGTTTTTCCTGCATATACAAGGATTCTAGCCAAGAAATACCCCAACTTCCGCATCAATTCTGTCAGCCCCGACTATGTCAAGACAGATATAAACTTCAATACCGGCATCTTGTCCGTTGTAGAAAGTGCTGCAAGTGTTCTGAAGTTAGCATTGCTGCCCTTCTGGCCTCTTCTTTGTTGGGTCTCAAGTATCATGTGCATGATTGAAGATGATCAATTTGTTTCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

161

Amino Acids

18.27

Weight (kDa)

9.51

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 152
AciI CCGC 3 cut(s) 150, 152, 301
AclI AACGTT 1 cut(s) 138
AcuI CTGAAG 2 cut(s) 108, 413
AfaI GTAC 2 cut(s) 14, 73
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 5 cut(s) 220, 236, 349, 458, 477
AluBI AGCT 2 cut(s) 86, 205
AluI AGCT 2 cut(s) 86, 205
Alw26I GTCTC 2 cut(s) 40, 439
AoxI GGCC 2 cut(s) 248, 416
ApeKI GCWGC 2 cut(s) 380, 406
AspLEI GCGC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 114
BbvI GCAGC 2 cut(s) 367, 393
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 2 cut(s) 40, 439
BfaI CTAG 2 cut(s) 56, 278
BglI GCCNNNNNGGC 1 cut(s) 415
BisI GCNGC 2 cut(s) 381, 407
BlsI GCNGC 2 cut(s) 382, 408
BmsI GCATC 3 cut(s) 45, 312, 366
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 421
BsaI GGTCTC 2 cut(s) 40, 439
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 401
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 367, 393
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 2 cut(s) 250, 418
BsiSI CCGG 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 2 cut(s) 40, 439
BsnI GGCC 2 cut(s) 250, 418
Bso31I GGTCTC 2 cut(s) 40, 439
Bsp143I GATC 1 cut(s) 463
BspACI CCGC 3 cut(s) 150, 152, 301
BspANI GGCC 2 cut(s) 250, 418
BspFNI CGCG 1 cut(s) 152
BspTNI GGTCTC 2 cut(s) 40, 439
BsrDI GCAATG 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 463
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 23, 426
BstC8I GCNNGC 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 466
BstMAI GTCTC 2 cut(s) 40, 439
BstMBI GATC 1 cut(s) 463
BstMWI GCNNNNNNNGC 1 cut(s) 415
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 367, 393
BsuRI GGCC 2 cut(s) 250, 418
BtgI CCRYGG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 248
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 353
Cfr42I CCGCGG 1 cut(s) 153
Csp6I GTAC 2 cut(s) 13, 72
CviAII CATG 2 cut(s) 445, 451
CviJI RGCY 7 cut(s) 86, 205, 246, 250, 281, 318, 418
CviKI_1 RGCY 7 cut(s) 86, 205, 246, 250, 281, 318, 418
CviQI GTAC 2 cut(s) 13, 72
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
Eam1104I CTCTTC 2 cut(s) 23, 426
EarI CTCTTC 2 cut(s) 23, 426
Eco31I GGTCTC 2 cut(s) 40, 439
Eco57I CTGAAG 2 cut(s) 108, 413
FaeI CATG 2 cut(s) 448, 454
FaiI YATR 8 cut(s) 69, 170, 265, 267, 327, 341, 446, 452
FatI CATG 2 cut(s) 444, 450
FauI CCCGC 1 cut(s) 145
FbaI TGATCA 1 cut(s) 463
Fnu4HI GCNGC 2 cut(s) 381, 407
Fsp4HI GCNGC 2 cut(s) 381, 407
FspBI CTAG 2 cut(s) 56, 278
GlaI GCGC 1 cut(s) 35
GluI GCNGC 2 cut(s) 381, 407
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 2 cut(s) 250, 418
HapII CCGG 1 cut(s) 354
HhaI GCGC 1 cut(s) 36
Hin1II CATG 2 cut(s) 448, 454
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HincII GTYRAC 2 cut(s) 6, 136
HindII GTYRAC 2 cut(s) 6, 136
HinfI GANTC 3 cut(s) 21, 119, 274
HpaI GTTAAC 2 cut(s) 6, 136
HpaII CCGG 1 cut(s) 354
HphI GGTGA 1 cut(s) 114
Hpy166II GTNNAC 4 cut(s) 6, 13, 136, 166
Hpy188I TCNGA 2 cut(s) 118, 393
Hpy188III TCNNGA 2 cut(s) 25, 331
Hpy8I GTNNAC 4 cut(s) 6, 13, 136, 166
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 3 cut(s) 263, 383, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 415
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 2 cut(s) 448, 454
HspAI GCGC 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 463
KspAI GTTAAC 2 cut(s) 6, 136
KspI CCGCGG 1 cut(s) 153
Kzo9I GATC 1 cut(s) 463
LpnPI CCDG 6 cut(s) 122, 232, 264, 273, 367, 400
Lsp1109I GCAGC 2 cut(s) 367, 393
LweI GCATC 3 cut(s) 45, 312, 366
MaeI CTAG 2 cut(s) 56, 278
MaeII ACGT 1 cut(s) 138
MalI GATC 1 cut(s) 465
MboI GATC 1 cut(s) 463
MboII GAAGA 4 cut(s) 40, 135, 413, 470
MluCI AATT 4 cut(s) 61, 129, 307, 467
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 6 cut(s) 24, 116, 157, 184, 217, 429
MseI TTAA 2 cut(s) 5, 135
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 2 cut(s) 86, 152
MspI CCGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 415
NdeII GATC 1 cut(s) 463
NlaIII CATG 2 cut(s) 448, 454
PfeI GAWTC 2 cut(s) 119, 274
PflFI GACNNNGTC 1 cut(s) 326
PkrI GCNGC 2 cut(s) 382, 408
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp1406I AACGTT 1 cut(s) 138
PsyI GACNNNGTC 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 2 cut(s) 14, 73
RsaNI GTAC 2 cut(s) 13, 72
RseI CAYNNNNRTG 1 cut(s) 449
SacII CCGCGG 1 cut(s) 153
SaqAI TTAA 2 cut(s) 5, 135
SatI GCNGC 2 cut(s) 381, 407
Sau3AI GATC 1 cut(s) 463
SchI GAGTC 1 cut(s) 30
SetI ASST 5 cut(s) 52, 88, 141, 195, 207
SfaNI GCATC 3 cut(s) 45, 312, 366
Sfr303I CCGCGG 1 cut(s) 153
SgrBI CCGCGG 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 4 cut(s) 61, 129, 307, 467
SsiI CCGC 3 cut(s) 150, 152, 301
SspMI CTAG 2 cut(s) 56, 278
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 141
TasI AATT 4 cut(s) 61, 129, 307, 467
TfiI GAWTC 2 cut(s) 119, 274
Tru1I TTAA 2 cut(s) 5, 135
Tru9I TTAA 2 cut(s) 5, 135
TseI GCWGC 2 cut(s) 380, 406
TspGWI ACGGA 2 cut(s) 58, 355
Tth111I GACNNNGTC 1 cut(s) 326
XspI CTAG 2 cut(s) 56, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.