Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0029152

Physical Location & Seq

Genomic Coordinates Forward (+)

15478844 .. 15485000

Gene Structure 6157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G179500.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTGCGTCCAAGAAAAAAAAAAAAAAAAACCGCAAGTTCACTGAGACCATCGAACTTCAGATTGGGCTGAAAAATTATGATCCCCAAAAAGACAAACGTTTCAGTGGTTCTGTTAGGTTGCCACACATCCCTCGTCCAAAGATGAAGGTTTGCATGCTTGGAGATGCTCAGCATGTTGAAGAGGCTGAGAAGATAGGGTTGGATTATATGGATGTTGAAGGGCTGAAGAAGCTAAACAAGAACAAGAAATTGGTTAAGAAACTGGCCAAGAAATACCATGCCTTTTTGGCATCAGAAGCTGTTATTAAGCAGATTCCCCGTTTTTTTGGGTGGTTTGTCTCAACTTTTCTAATTACATATATTAATGTCATAATATTATATTGTTTCCTATTTCCTCTAGTTTTGACAGGAATTACACCAAAAGAGGAGCCTTCAATCAATCTCAAGTTGCTCTTCAGGTTCATGTTCATCAATCATGGAGCAGACAAACGCTTTCACGAGCACTATGTAAGCAGATCAGGACCAGAAGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

180

Amino Acids

20.81

Weight (kDa)

9.9

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029152)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G179500_v2.0.a1 Prupe.1G179500_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	34
AclI	AACGTT	1 cut(s)	100
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	267
AcuI	CTGAAG	3 cut(s)	44, 248, 442
AgsI	TTSAA	3 cut(s)	182, 221, 438
AjuI	GAANNNNNNNTTGG	6 cut(s)	48, 80, 185, 217, 236, 268
AloI	GAACNNNNNNTCC	1 cut(s)	516
AluBI	AGCT	2 cut(s)	235, 302
AluI	AGCT	2 cut(s)	235, 302
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	2 cut(s)	41, 346
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	524
BalI	TGGCCA	1 cut(s)	269
BauI	CACGAG	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	507
BccI	CCATC	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	41, 346
BfaI	CTAG	1 cut(s)	401
BglI	GCCNNNNNGGC	1 cut(s)	290
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	432
BmsI	GCATC	2 cut(s)	157, 302
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	129, 220
BseMII	CTCAG	3 cut(s)	36, 180, 185
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	443
BshFI	GGCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	507
BsmAI	GTCTC	2 cut(s)	41, 346
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	2 cut(s)	82, 518
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	3 cut(s)	37, 181, 184
BspLI	GGNNCC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	270
BssMI	GATC	2 cut(s)	82, 518
BssSI	CACGAG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	500
Bst6I	CTCTTC	2 cut(s)	177, 461
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	3 cut(s)	45, 171, 189
BstF5I	GGATG	2 cut(s)	129, 220
BstKTI	GATC	2 cut(s)	85, 521
BstMAI	GTCTC	2 cut(s)	41, 346
BstMBI	GATC	2 cut(s)	82, 518
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 290, 299
BstNSI	RCATGY	2 cut(s)	160, 179
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	129, 220
BtsIMutI	CAGTG	2 cut(s)	42, 112
Cac8I	GCNNGC	1 cut(s)	158
CaiI	CAGNNNCTG	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	524
CviAII	CATG	5 cut(s)	157, 176, 281, 466, 479
CviJI	RGCY	8 cut(s)	5, 70, 188, 226, 235, 269, 302, 433
CviKI_1	RGCY	8 cut(s)	5, 70, 188, 226, 235, 269, 302, 433
DdeI	CTNAG	3 cut(s)	45, 171, 189
DpnI	GATC	2 cut(s)	84, 520
DpnII	GATC	2 cut(s)	82, 518
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	177, 461
EarI	CTCTTC	2 cut(s)	177, 461
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	524
Eco57I	CTGAAG	3 cut(s)	44, 248, 442
FaeI	CATG	5 cut(s)	160, 179, 284, 469, 482
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FatI	CATG	5 cut(s)	156, 175, 280, 465, 478
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	116, 227
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	269
Hin1II	CATG	5 cut(s)	160, 179, 284, 469, 482
HinfI	GANTC	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	2 cut(s)	63, 298
Hpy188III	TCNNGA	2 cut(s)	500, 522
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	3 cut(s)	142, 215, 444
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 290, 299
HpyF3I	CTNAG	3 cut(s)	45, 171, 189
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	5 cut(s)	160, 179, 284, 469, 482
Kzo9I	GATC	2 cut(s)	82, 518
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	2 cut(s)	430, 482
LpnPI	CCDG	4 cut(s)	251, 396, 445, 507
LweI	GCATC	2 cut(s)	157, 302
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	100
MalI	GATC	2 cut(s)	84, 520
MboI	GATC	2 cut(s)	82, 518
MboII	GAAGA	4 cut(s)	194, 205, 241, 448
MhlI	GDGCHC	1 cut(s)	507
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	4 cut(s)	76, 251, 354, 414
MluNI	TGGCCA	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	4 cut(s)	144, 178, 408, 421
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	3 cut(s)	258, 309, 366
Msp20I	TGGCCA	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	232, 290, 299
NdeII	GATC	2 cut(s)	82, 518
NlaIII	CATG	5 cut(s)	160, 179, 284, 469, 482
NlaIV	GGNNCC	1 cut(s)	432
NspI	RCATGY	2 cut(s)	160, 179
PaeI	GCATGC	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	7
PshBI	ATTAAT	1 cut(s)	366
Psp1406I	AACGTT	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	524
PstNI	CAGNNNCTG	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	3 cut(s)	258, 309, 366
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	82, 518
Sau96I	GGNCC	1 cut(s)	524
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	6 cut(s)	103, 122, 153, 237, 304, 464
SfaNI	GCATC	2 cut(s)	157, 302
SinI	GGWCC	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	4 cut(s)	76, 251, 354, 414
SsiI	CCGC	1 cut(s)	34
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	1 cut(s)	401
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	54
TasI	AATT	4 cut(s)	76, 251, 354, 414
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	3 cut(s)	258, 309, 366
Tru9I	TTAA	3 cut(s)	258, 309, 366
TscAI	CASTG	2 cut(s)	49, 112
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	161, 454, 460
TspRI	CASTG	2 cut(s)	49, 112
VpaK11BI	GGWCC	1 cut(s)	524
VspI	ATTAAT	1 cut(s)	366
XceI	RCATGY	2 cut(s)	160, 179
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.