Prupe.1G182500_v2.0.a1

protein import into mitochondrial matrix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
16040031 .. 16041115
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G182500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 345 bp
ATGGGAAGTGATTTCCCATCAAATCCATTTCGTGAACCAGATGGTGACATGGATGGTCCTAAATGGCTATTACATATTTATCTGCATTATTTTGTACATGCCTCAAAATCGGGTGTAGCGCAAGAAACATTACAGAATTCTGTTCATAGAAGTACCAAGGTCATCACAGAGCAAGAAGCTAGGCAGATTCTTAATGTCTCAGAGAGAACCACTTGGGAGGAAAGATACAACACTTCATTCGAAAATAATGCCGAGAACGGGACCTTTTACCTCGAGTCAAAAGTTCACAAGGCCAAGGAATGCTTAGACGCTGCATATCGAGACAAATGGCCTGAAAGATTGAAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001405 GO:0001503 GO:0001700 GO:0002164 GO:0002165 GO:0002168 GO:0003674 GO:0003779 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006605 GO:0006626 GO:0006725 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006892 GO:0006895 GO:0006996 GO:0007005 GO:0007010 GO:0007015 GO:0007275 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0008320 GO:0008565 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009792 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009968 GO:0009987 GO:0010605 GO:0010639 GO:0010646 GO:0010648 GO:0010821 GO:0010823 GO:0010941 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0016482 GO:0017038 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019866 GO:0019898 GO:0019904 GO:0022607 GO:0022804 GO:0022857 GO:0022884 GO:0023051 GO:0023057 GO:0030029 GO:0030036 GO:0030041 GO:0030150 GO:0031090 GO:0031224 GO:0031312 GO:0031314 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0032780 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042886 GO:0042887 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044431 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051258 GO:0051336 GO:0051346 GO:0051641 GO:0051649 GO:0055085 GO:0060255 GO:0060548 GO:0065002 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0071897 GO:0072594 GO:0072655 GO:0080090 GO:0090199 GO:0090201 GO:0090304 GO:0097435 GO:0098791 GO:0098796 GO:0098798 GO:0098800 GO:1900117 GO:1900118 GO:1901360 GO:1901362 GO:1901576 GO:1902510 GO:1902511 GO:1903624 GO:1903625 GO:1904680 GO:1990542 GO:2001233 GO:2001234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1899 Pam16 WD40 WD40_4

Protein Analysis

115

Amino Acids

13.45

Weight (kDa)

5.94

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 136
AfaI GTAC 2 cut(s) 96, 154
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 1 cut(s) 343
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 202, 315
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 2 cut(s) 291, 329
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 136
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 56, 261
AsuHPI GGTGA 1 cut(s) 56
AsuII TTCGAA 1 cut(s) 240
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 2 cut(s) 56, 261
BbvI GCAGC 1 cut(s) 298
BccI CCATC 3 cut(s) 25, 35, 47
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BcoDI GTCTC 2 cut(s) 202, 315
BfaI CTAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme18I GGWCC 2 cut(s) 56, 261
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 56, 261
BmiI GGNNCC 1 cut(s) 262
Bpu14I TTCGAA 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 156, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 156, 294
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 298
BshFI GGCC 2 cut(s) 293, 331
BsiHKCI CYCGRG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 202, 315
BsmFI GGGAC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 2 cut(s) 293, 331
BsoBI CYCGRG 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 240
Bsp1407I TGTACA 1 cut(s) 94
BspANI GGCC 2 cut(s) 293, 331
BspCNI CTCAG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 262
BspT104I TTCGAA 1 cut(s) 240
BsrGI TGTACA 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 156, 294
BssT1I CCWWGG 2 cut(s) 156, 294
BstAUI TGTACA 1 cut(s) 94
BstBI TTCGAA 1 cut(s) 240
BstDEI CTNAG 2 cut(s) 199, 304
BstF5I GGATG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 121
BstMAI GTCTC 2 cut(s) 202, 315
BstNSI RCATGY 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 293, 331
BtsCI GGATG 1 cut(s) 58
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 56, 261
CseI GACGC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 95, 153
CviAII CATG 2 cut(s) 49, 98
CviJI RGCY 4 cut(s) 67, 179, 293, 331
CviKI_1 RGCY 4 cut(s) 67, 179, 293, 331
CviQI GTAC 2 cut(s) 95, 153
DdeI CTNAG 2 cut(s) 199, 304
Eco130I CCWWGG 2 cut(s) 156, 294
Eco47I GGWCC 2 cut(s) 56, 261
Eco88I CYCGRG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 136
EcoT14I CCWWGG 2 cut(s) 156, 294
ErhI CCWWGG 2 cut(s) 156, 294
FaeI CATG 2 cut(s) 52, 101
FaiI YATR 5 cut(s) 50, 75, 99, 147, 316
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 1 cut(s) 274
FatI CATG 2 cut(s) 48, 97
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 312
HaeIII GGCC 2 cut(s) 293, 331
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 52, 101
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 2 cut(s) 187, 275
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 35, 286
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 32, 320
Hpy8I GTNNAC 2 cut(s) 35, 286
HpyCH4V TGCA 2 cut(s) 85, 314
HpyF3I CTNAG 2 cut(s) 199, 304
Hsp92II CATG 2 cut(s) 52, 101
HspAI GCGC 1 cut(s) 119
LpnPI CCDG 1 cut(s) 51
Lsp1109I GCAGC 1 cut(s) 298
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 44
MluCI AATT 1 cut(s) 136
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 3 cut(s) 112, 211, 281
MseI TTAA 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 305
NlaIII CATG 2 cut(s) 52, 101
NlaIV GGNNCC 1 cut(s) 262
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 1 cut(s) 101
NspV TTCGAA 1 cut(s) 240
PaeR7I CTCGAG 1 cut(s) 272
PctI GAATGC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 2 cut(s) 56, 261
PspPPI RGGWCCY 1 cut(s) 261
PspXI VCTCGAGB 1 cut(s) 272
RsaI GTAC 2 cut(s) 96, 154
RsaNI GTAC 2 cut(s) 95, 153
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 312
Sau96I GGNCC 2 cut(s) 56, 261
SchI GAGTC 1 cut(s) 284
SetI ASST 4 cut(s) 162, 181, 266, 273
Sfr274I CTCGAG 1 cut(s) 272
SfuI TTCGAA 1 cut(s) 240
SinI GGWCC 2 cut(s) 56, 261
SlaI CTCGAG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 180
StyI CCWWGG 2 cut(s) 156, 294
TaqI TCGA 3 cut(s) 240, 273, 319
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 94
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 134, 225
VpaK11BI GGWCC 2 cut(s) 56, 261
XapI RAATTY 1 cut(s) 136
XceI RCATGY 1 cut(s) 101
XhoI CTCGAG 1 cut(s) 272
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.