Prupe.1G185300_v2.0.a1

Belongs to the Casparian strip membrane proteins (CASP) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
16818706 .. 16819063
358 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G185300.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 261 bp
ATGCATATTCCAAAGAAGGTCCTCCACAACCCTGCATTGGTTAGCCTCTTTATAGTTGGAGACTGGCTTACAGCAACATTGTCTCTTGCAGCAGCTTTTGCATCATTTGGCATAATTGTGTTGTACTTTAGTGGCTTGAGCCACTGCAATTTTGGAGAGGAATGCCAAAAATACCAAATGGCAGTTGCATTGGCGTACCTGAGTTGGGTAACAATTGCAATTTCTTCTCTAATTATGCTATGGCTATTGGCAGCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.41

Weight (kDa)

6.8

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 125, 197
AfiI CCNNNNNNNGG 2 cut(s) 37, 205
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 54, 87
ApeKI GCWGC 3 cut(s) 89, 92, 251
AspS9I GGNCC 1 cut(s) 19
AvaII GGWCC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 101, 104
BcoDI GTCTC 2 cut(s) 54, 87
BisI GCNGC 3 cut(s) 90, 93, 252
BlsI GCNGC 3 cut(s) 91, 94, 253
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 205
Bse1I ACTGG 1 cut(s) 68
BseLI CCNNNNNNNGG 2 cut(s) 37, 205
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 101, 104
BslI CCNNNNNNNGG 2 cut(s) 37, 205
BsmAI GTCTC 2 cut(s) 54, 87
BsmI GAATGC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 200
BstMAI GTCTC 2 cut(s) 54, 87
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 258
BstV1I GCAGC 2 cut(s) 101, 104
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 2 cut(s) 124, 196
CviAII CATG 1 cut(s) 255
CviJI RGCY 6 cut(s) 45, 67, 95, 135, 141, 244
CviKI_1 RGCY 6 cut(s) 45, 67, 95, 135, 141, 244
CviQI GTAC 2 cut(s) 124, 196
DdeI CTNAG 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 258
FaiI YATR 6 cut(s) 6, 53, 113, 236, 241, 256
FatI CATG 1 cut(s) 254
Fnu4HI GCNGC 3 cut(s) 90, 93, 252
Fsp4HI GCNGC 3 cut(s) 90, 93, 252
GluI GCNGC 3 cut(s) 90, 93, 252
Hin1II CATG 1 cut(s) 258
HpyAV CCTTC 1 cut(s) 10
HpyCH4V TGCA 7 cut(s) 4, 35, 89, 101, 147, 188, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 1 cut(s) 258
LpnPI CCDG 3 cut(s) 45, 49, 212
Lsp1109I GCAGC 2 cut(s) 101, 104
LweI GCATC 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 208
MboII GAAGA 1 cut(s) 216
MfeI CAATTG 1 cut(s) 213
MluCI AATT 5 cut(s) 114, 148, 213, 219, 231
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 3 cut(s) 32, 56, 151
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 116
MunI CAATTG 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 258
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 258
PctI GAATGC 1 cut(s) 167
PkrI GCNGC 3 cut(s) 91, 94, 253
PpuMI RGGWCCY 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 19
PspPI GGNCC 1 cut(s) 19
PspPPI RGGWCCY 1 cut(s) 19
RsaI GTAC 2 cut(s) 125, 197
RsaNI GTAC 2 cut(s) 124, 196
RseI CAYNNNNRTG 1 cut(s) 116
SatI GCNGC 3 cut(s) 90, 93, 252
Sau96I GGNCC 1 cut(s) 19
SetI ASST 3 cut(s) 21, 97, 201
SfaNI GCATC 1 cut(s) 110
SgeI CNNG 5 cut(s) 44, 76, 98, 148, 211
SinI GGWCC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 5 cut(s) 114, 148, 213, 219, 231
TasI AATT 5 cut(s) 114, 148, 213, 219, 231
TatI WGTACW 1 cut(s) 123
TscAI CASTG 1 cut(s) 149
TseI GCWGC 3 cut(s) 89, 92, 251
TspRI CASTG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 19
XceI RCATGY 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.