Prupe.1G188500_v2.0.a1

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
17305899 .. 17308330
2432 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G188500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 195 bp
ATGGCTGCCCTGCTTGCTATTGATCTTGAGAAGATATTTAAGAGGGTGAAAAAAGCTTGGAAGCATGGTAAGGATCAGCTTGGTAGATTATGTGATGAAGAGTTTGTTGATATTGGTACAAGTGAAAGAACTATAAAGGAGAAGCTTAAGTGTACCTTATTTAGTGATTATGAAGGTATACATTTATATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

65

Amino Acids

7.47

Weight (kDa)

7.78

Isoelectric Point (pI)

24.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 178
AclWI GGATC 1 cut(s) 81
AfaI GTAC 2 cut(s) 118, 154
AflII CTTAAG 1 cut(s) 146
AluBI AGCT 3 cut(s) 56, 79, 145
AluI AGCT 3 cut(s) 56, 79, 145
AlwI GGATC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 5
AsuHPI GGTGA 1 cut(s) 58
BfrI CTTAAG 1 cut(s) 146
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 47
Bsp143I GATC 2 cut(s) 22, 73
BspPI GGATC 1 cut(s) 81
BspTI CTTAAG 1 cut(s) 146
BssMI GATC 2 cut(s) 22, 73
BssNAI GTATAC 1 cut(s) 179
Bst1107I GTATAC 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 15
BstKTI GATC 2 cut(s) 25, 76
BstMBI GATC 2 cut(s) 22, 73
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstZ17I GTATAC 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 117, 153
CviAII CATG 1 cut(s) 65
CviJI RGCY 4 cut(s) 5, 56, 79, 145
CviKI_1 RGCY 4 cut(s) 5, 56, 79, 145
CviQI GTAC 2 cut(s) 117, 153
DpnI GATC 2 cut(s) 24, 75
DpnII GATC 2 cut(s) 22, 73
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
FaeI CATG 1 cut(s) 68
FaiI YATR 8 cut(s) 66, 91, 134, 171, 179, 187, 189, 191
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 1 cut(s) 64
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 68
HindIII AAGCTT 2 cut(s) 54, 143
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 153, 179
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 153, 179
HpyAV CCTTC 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 2 cut(s) 22, 73
LpnPI CCDG 1 cut(s) 23
MalI GATC 2 cut(s) 24, 75
MboI GATC 2 cut(s) 22, 73
MboII GAAGA 2 cut(s) 43, 110
MnlI CCTC 1 cut(s) 36
MseI TTAA 2 cut(s) 39, 147
MspCI CTTAAG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 2 cut(s) 22, 73
NlaIII CATG 1 cut(s) 68
PkrI GCNGC 1 cut(s) 7
RsaI GTAC 2 cut(s) 118, 154
RsaNI GTAC 2 cut(s) 117, 153
SaqAI TTAA 2 cut(s) 39, 147
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 22, 73
SetI ASST 5 cut(s) 58, 81, 147, 158, 178
SgeI CNNG 7 cut(s) 22, 26, 38, 69, 77, 92, 132
SmlI CTYRAG 2 cut(s) 26, 146
SmoI CTYRAG 2 cut(s) 26, 146
Tru1I TTAA 2 cut(s) 39, 147
Tru9I TTAA 2 cut(s) 39, 147
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 111, 186
Vha464I CTTAAG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.