Prupe.1G192100_v2.0.a1

Programmed cell death protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
17805503 .. 17806712
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G192100.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 282 bp
ATGTGTATGTCAATGCTGTGTCTTCGTCGAGATCAACATGAACAATGGAAATGCCATCAGGACAAGCCTTCTAGAAGTGTGAAGGTTTGCCGCTGCCAATTACCCTGTGATAATCCTTTCTACTCAAGTGAGCCACCAAAGAAGGATAGTACAGACACGCCTCTAGCATCTTATGTTGGATCTGGAAATGCTGTGGCTTTTGCAACTGGGAAAGTAAAGATTCTTAGATACTCTGTGAGCGCTCAATTCTTTGGTGTCATTCTAGCGCCTAGCCTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.34

Weight (kDa)

9.02

Isoelectric Point (pI)

61.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 187
AfaI GTAC 1 cut(s) 151
AfeI AGCGCT 1 cut(s) 241
AlwI GGATC 1 cut(s) 187
Aor51HI AGCGCT 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 93
AspLEI GCGC 2 cut(s) 242, 268
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 63
BfaI CTAG 4 cut(s) 72, 164, 263, 270
BfoI RGCGCY 2 cut(s) 243, 269
BisI GCNGC 2 cut(s) 91, 94
BlsI GCNGC 2 cut(s) 92, 95
BmrI ACTGGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 80
Bsp143I GATC 2 cut(s) 31, 179
BspACI CCGC 1 cut(s) 91
BspPI GGATC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 211
BssMI GATC 2 cut(s) 31, 179
BstDEI CTNAG 1 cut(s) 224
BstH2I RGCGCY 2 cut(s) 243, 269
BstHHI GCGC 2 cut(s) 242, 268
BstKTI GATC 2 cut(s) 34, 182
BstMBI GATC 2 cut(s) 31, 179
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
CfoI GCGC 2 cut(s) 242, 268
Csp6I GTAC 1 cut(s) 150
CviAII CATG 1 cut(s) 38
CviJI RGCY 4 cut(s) 67, 133, 197, 273
CviKI_1 RGCY 4 cut(s) 67, 133, 197, 273
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 1 cut(s) 224
DpnI GATC 2 cut(s) 33, 181
DpnII GATC 2 cut(s) 31, 179
Eco47III AGCGCT 1 cut(s) 241
FaeI CATG 1 cut(s) 41
FaiI YATR 3 cut(s) 8, 39, 174
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 91, 94
Fsp4HI GCNGC 2 cut(s) 91, 94
FspBI CTAG 4 cut(s) 72, 164, 263, 270
GlaI GCGC 2 cut(s) 241, 267
GluI GCNGC 2 cut(s) 91, 94
HaeII RGCGCY 2 cut(s) 243, 269
HhaI GCGC 2 cut(s) 242, 268
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 2 cut(s) 240, 266
HinP1I GCGC 2 cut(s) 240, 266
HinfI GANTC 1 cut(s) 220
Hpy188III TCNNGA 5 cut(s) 29, 59, 72, 183, 279
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 3 cut(s) 76, 78, 136
HpyCH4V TGCA 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 2 cut(s) 240, 266
Kzo9I GATC 2 cut(s) 31, 179
LpnPI CCDG 4 cut(s) 44, 118, 168, 192
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 1 cut(s) 176
MaeI CTAG 4 cut(s) 72, 164, 263, 270
MalI GATC 2 cut(s) 33, 181
MboI GATC 2 cut(s) 31, 179
MboII GAAGA 1 cut(s) 14
MflI RGATCY 1 cut(s) 179
MluCI AATT 2 cut(s) 98, 245
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 93
NdeII GATC 2 cut(s) 31, 179
NlaIII CATG 1 cut(s) 41
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 92, 95
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SatI GCNGC 2 cut(s) 91, 94
Sau3AI GATC 2 cut(s) 31, 179
SetI ASST 1 cut(s) 87
SfaNI GCATC 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 2 cut(s) 98, 245
SsiI CCGC 1 cut(s) 91
SspMI CTAG 4 cut(s) 72, 164, 263, 270
TaqI TCGA 1 cut(s) 28
TasI AATT 2 cut(s) 98, 245
TatI WGTACW 1 cut(s) 149
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 220
TseI GCWGC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 54
XbaI TCTAGA 1 cut(s) 71
XspI CTAG 4 cut(s) 72, 164, 263, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.