Prupe.1G193800_v2.0.a1

Ribosomal L18p L5e family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
18226227 .. 18227051
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G193800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 288 bp
ATGGCCACCTCCTCCGAGCAAGAGTTCGTCGCCCAATACCGGGCAAAGTTCAACCGCTTCCGTCGCTCCCAGACCTTCTGGGACGCTAAGGTCGCCTCTCGTGTCGGCGAGAAGCTTGGCCTCTGTCTCCAGGAGATCGGCGGCATCGGCGTAGAGATCAACGTCGATGAAGAGCTCTCGAGGCCCGTCCACCACCGCATTAGGGTCTTGCCGCTCTTCGATTCCATTAAACTAGCCGGCGTCGTTGTCAATGGCGCCGACGAGCTTGGGATCGGTCCGCCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.51

Weight (kDa)

6.73

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 254
AccBSI CCGCTC 1 cut(s) 214
AciI CCGC 5 cut(s) 55, 141, 196, 212, 278
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 240, 255
AfiI CCNNNNNNNGG 3 cut(s) 39, 40, 202
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 4 cut(s) 115, 175, 265, 285
AluI AGCT 4 cut(s) 115, 175, 265, 285
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 3 cut(s) 3, 118, 182
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 183, 275
AsuC2I CCSGG 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 178
AvaII GGWCC 1 cut(s) 275
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 177
BauI CACGAG 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 131
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 3 cut(s) 233, 282, 286
BfoI RGCGCY 1 cut(s) 258
BisI GCNGC 2 cut(s) 142, 212
BlsI GCNGC 2 cut(s) 143, 213
Bme1390I CCNGG 2 cut(s) 41, 131
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 183, 275
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 2 cut(s) 41, 131
BmsI GCATC 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 41
BsaHI GRCGYC 2 cut(s) 240, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 40, 202
Bse118I RCCGGY 1 cut(s) 236
BseBI CCWGG 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 39, 40, 202
BshFI GGCC 3 cut(s) 5, 120, 184
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 2 cut(s) 40, 237
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 3 cut(s) 39, 40, 202
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 3 cut(s) 5, 120, 184
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 3 cut(s) 135, 156, 270
BspACI CCGC 5 cut(s) 55, 141, 196, 212, 278
BspANI GGCC 3 cut(s) 5, 120, 184
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 1 cut(s) 278
BspQI GCTCTTC 2 cut(s) 165, 221
BspT107I GGYRCC 1 cut(s) 254
BsrBI CCGCTC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssMI GATC 3 cut(s) 135, 156, 270
BssNI GRCGYC 2 cut(s) 240, 255
BssSI CACGAG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 131
Bst6I CTCTTC 2 cut(s) 165, 221
BstACI GRCGYC 2 cut(s) 240, 255
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 3 cut(s) 138, 159, 273
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 3 cut(s) 135, 156, 270
BstMWI GCNNNNNNNGC 4 cut(s) 63, 92, 147, 181
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 39, 129
BsuRI GGCC 3 cut(s) 5, 120, 184
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 183, 275
CpoI CGGWCCG 1 cut(s) 275
CseI GACGC 2 cut(s) 92, 229
CspI CGGWCCG 1 cut(s) 275
CviJI RGCY 8 cut(s) 5, 115, 120, 175, 184, 236, 265, 285
CviKI_1 RGCY 8 cut(s) 5, 115, 120, 175, 184, 236, 265, 285
DdeI CTNAG 1 cut(s) 87
DinI GGCGCC 1 cut(s) 256
DpnI GATC 3 cut(s) 137, 158, 272
DpnII GATC 3 cut(s) 135, 156, 270
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 165, 221
EarI CTCTTC 2 cut(s) 165, 221
EciI GGCGGA 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 177
EgeI GGCGCC 1 cut(s) 256
EheI GGCGCC 1 cut(s) 256
FaqI GGGAC 1 cut(s) 95
Fnu4HI GCNGC 2 cut(s) 142, 212
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 2 cut(s) 142, 212
FspBI CTAG 3 cut(s) 233, 282, 286
GlaI GCGC 1 cut(s) 256
GluI GCNGC 2 cut(s) 142, 212
GsuI CTGGAG 1 cut(s) 113
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 3 cut(s) 5, 120, 184
HapII CCGG 2 cut(s) 40, 237
HgaI GACGC 2 cut(s) 92, 229
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 2 cut(s) 240, 255
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 1 cut(s) 221
HpaII CCGG 2 cut(s) 40, 237
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 5 cut(s) 32, 66, 167, 245, 263
HpyAV CCTTC 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 92, 147, 181
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 2 cut(s) 240, 255
HspAI GCGC 1 cut(s) 255
KasI GGCGCC 1 cut(s) 254
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
Kzo9I GATC 3 cut(s) 135, 156, 270
LguI GCTCTTC 2 cut(s) 165, 221
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 6 cut(s) 53, 64, 83, 116, 143, 250
LweI GCATC 1 cut(s) 153
MaeI CTAG 3 cut(s) 233, 282, 286
MaeII ACGT 1 cut(s) 162
MalI GATC 3 cut(s) 137, 158, 272
MbiI CCGCTC 1 cut(s) 214
MboI GATC 3 cut(s) 135, 156, 270
MboII GAAGA 2 cut(s) 182, 208
MhlI GDGCHC 1 cut(s) 177
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 255
MnlI CCTC 5 cut(s) 19, 22, 106, 131, 174
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 236
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 40, 237
MspR9I CCNGG 2 cut(s) 41, 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 63, 92, 147, 181
NaeI GCCGGC 1 cut(s) 238
NarI GGCGCC 1 cut(s) 255
NciI CCSGG 1 cut(s) 41
NdeII GATC 3 cut(s) 135, 156, 270
NgoMIV GCCGGC 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 256
PaeR7I CTCGAG 1 cut(s) 178
PciSI GCTCTTC 2 cut(s) 165, 221
PdiI GCCGGC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 2 cut(s) 143, 213
PluTI GGCGCC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 183, 275
Rsr2I CGGWCCG 1 cut(s) 275
RsrII CGGWCCG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 2 cut(s) 165, 221
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 2 cut(s) 142, 212
Sau3AI GATC 3 cut(s) 135, 156, 270
Sau96I GGNCC 2 cut(s) 183, 275
ScrFI CCNGG 2 cut(s) 41, 131
SduI GDGCHC 1 cut(s) 177
SetI ASST 8 cut(s) 11, 77, 93, 117, 165, 177, 267, 287
SfaNI GCATC 1 cut(s) 153
SfoI GGCGCC 1 cut(s) 256
Sfr274I CTCGAG 1 cut(s) 178
SinI GGWCC 1 cut(s) 275
SlaI CTCGAG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SsiI CCGC 5 cut(s) 55, 141, 196, 212, 278
SspDI GGCGCC 1 cut(s) 254
SspMI CTAG 3 cut(s) 233, 282, 286
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 39, 129
TaiI ACGT 1 cut(s) 165
TaqI TCGA 3 cut(s) 165, 179, 219
TaqII GACCGA 1 cut(s) 263
TauI GCSGC 2 cut(s) 144, 214
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 178
XspI CTAG 3 cut(s) 233, 282, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.