Prupe.1G194400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
18368413 .. 18369237
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G194400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 825 bp
ATGGAGTTTCCTAAGACCTACTTGTTTGTGCTGTTCACCACTCTTCTCTTGCTGTCCTCTTCTTGTTTCTGTGATCAAGGGTCTGCAAACATTGATCTGAAGAGGCCAATCAAACGTGCTGATCAACATCCTCTCCTCAAGGATTGGATCAAGAGGCAGGTCCTTTCTGGCCCAAACCATTTACACGACATATTACCACCAAAGGTTGATGATGCAAAAAATTATCGTACCTTGAATGAGGTGCCTTCCGGTCCAAATCCTTTGCATAACATATTGCCACCACAGTTGGATGATCCTACAAATCATCAAATCTTGAGGGAAGTGCCTTCTGGTCCAAATCCTTTACATCACATCCTCCCCCCGCAGCAGAAGTTGGATGATCCTGCAAATCATCAAATCTTGAGGGAGGTTCCTTCCGGTCCAAATCCTTTGCATCACAACGTTCCCCCGCAGCAAAAGTTGGATGATCCAGAAAACTATCATCTCACGAGGCTTGTGCCCACTGGCCCGAATCAGGAAGAGTCTCCTGAGGAACCACCAGAGTTCGATGATAGTCCTGCACACTATCATCAAATGAGGGTTGTACCTACTGGCCCAAATCAAGAAGAGTCCCCTGAGGAACCACCAGAGTTGGATGATAATCCTGCAAATTATCATCTCAATAGGCTTGTGCCTACCGGCCCAAATCGGGCAGAGTCTCCCGAGGAACTGCCTTCAAGAGTACTGTCTGGTCCGCCTCCACAACCTTCGCCTGTGAAAGCCAATCTTCTGAAACTCCGTTCAAGACGCTTATTGGGTATTCCTATAGCAAAGAGTTTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.8

Weight (kDa)

5.76

Isoelectric Point (pI)

79.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 241
AciI CCGC 3 cut(s) 362, 449, 734
AclI AACGTT 1 cut(s) 441
AclWI GGATC 4 cut(s) 155, 287, 374, 461
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 3 cut(s) 229, 585, 723
AfiI CCNNNNNNNGG 2 cut(s) 514, 688
AgsI TTSAA 3 cut(s) 235, 717, 783
Alw26I GTCTC 2 cut(s) 528, 702
AlwI GGATC 4 cut(s) 155, 287, 374, 461
Ama87I CYCGRG 1 cut(s) 701
AoxI GGCC 5 cut(s) 104, 169, 505, 592, 679
ApeKI GCWGC 2 cut(s) 364, 451
AspS9I GGNCC 9 cut(s) 160, 170, 251, 332, 419, 506, 593, 680, 731
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 701
AvaII GGWCC 5 cut(s) 160, 251, 332, 419, 731
AxyI CCTNAGG 2 cut(s) 528, 615
BaeGI GKGCMC 1 cut(s) 501
BanI GGYRCC 1 cut(s) 241
BauI CACGAG 1 cut(s) 487
BbvI GCAGC 2 cut(s) 376, 463
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BclI TGATCA 2 cut(s) 73, 121
BcoDI GTCTC 2 cut(s) 528, 702
BfmI CTRYAG 1 cut(s) 804
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 2 cut(s) 365, 452
BlsI GCNGC 2 cut(s) 366, 453
BmcAI AGTACT 1 cut(s) 723
Bme18I GGWCC 5 cut(s) 160, 251, 332, 419, 731
BmeT110I CYCGRG 1 cut(s) 701
BmgT120I GGNCC 9 cut(s) 160, 170, 251, 332, 419, 506, 593, 680, 731
BmiI GGNNCC 4 cut(s) 243, 411, 534, 621
BmsI GCATC 2 cut(s) 202, 442
BpuEI CTTGAG 3 cut(s) 122, 334, 421
BsaBI GATNNNNATC 2 cut(s) 126, 639
BsaJI CCNNGG 1 cut(s) 702
BsaWI WCCGGW 2 cut(s) 248, 416
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 514, 688
Bse118I RCCGGY 1 cut(s) 677
Bse1I ACTGG 2 cut(s) 508, 595
Bse21I CCTNAGG 2 cut(s) 528, 615
Bse8I GATNNNNATC 2 cut(s) 126, 639
BseDI CCNNGG 1 cut(s) 702
BseGI GGATG 6 cut(s) 127, 295, 351, 382, 469, 640
BseJI GATNNNNATC 2 cut(s) 126, 639
BseLI CCNNNNNNNGG 2 cut(s) 514, 688
BseMII CTCAG 2 cut(s) 519, 606
BseNI ACTGG 2 cut(s) 508, 595
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 501
BseXI GCAGC 2 cut(s) 376, 463
BsgI GTGCAG 1 cut(s) 543
BshFI GGCC 5 cut(s) 106, 171, 507, 594, 681
BshNI GGYRCC 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 701
BsiSI CCGG 3 cut(s) 249, 417, 678
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 2 cut(s) 514, 688
BsmAI GTCTC 2 cut(s) 528, 702
BsmFI GGGAC 1 cut(s) 595
BsnI GGCC 5 cut(s) 106, 171, 507, 594, 681
BsoBI CYCGRG 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 7 cut(s) 73, 94, 121, 147, 292, 379, 466
BspACI CCGC 3 cut(s) 362, 449, 734
BspANI GGCC 5 cut(s) 106, 171, 507, 594, 681
BspCNI CTCAG 2 cut(s) 520, 607
BspLI GGNNCC 4 cut(s) 243, 411, 534, 621
BspMI ACCTGC 1 cut(s) 148
BspPI GGATC 4 cut(s) 155, 287, 374, 461
BspT107I GGYRCC 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 677
BsrI ACTGG 2 cut(s) 508, 595
BssAI RCCGGY 1 cut(s) 677
BssECI CCNNGG 1 cut(s) 702
BssMI GATC 7 cut(s) 73, 94, 121, 147, 292, 379, 466
BssSI CACGAG 1 cut(s) 487
Bst2BI CACGAG 1 cut(s) 487
Bst4CI ACNGT 2 cut(s) 285, 726
Bst6I CTCTTC 5 cut(s) 48, 64, 95, 513, 600
BstDEI CTNAG 3 cut(s) 12, 528, 615
BstF5I GGATG 6 cut(s) 127, 295, 351, 382, 469, 640
BstKTI GATC 7 cut(s) 76, 97, 124, 150, 295, 382, 469
BstMAI GTCTC 2 cut(s) 528, 702
BstMBI GATC 7 cut(s) 73, 94, 121, 147, 292, 379, 466
BstSFI CTRYAG 1 cut(s) 804
BstSLI GKGCMC 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 376, 463
Bsu36I CCTNAGG 2 cut(s) 528, 615
BsuRI GGCC 5 cut(s) 106, 171, 507, 594, 681
BtsCI GGATG 6 cut(s) 127, 295, 351, 382, 469, 640
BtsIMutI CAGTG 1 cut(s) 501
BveI ACCTGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 677
Cfr13I GGNCC 9 cut(s) 160, 170, 251, 332, 419, 506, 593, 680, 731
CseI GACGC 1 cut(s) 795
Csp6I GTAC 3 cut(s) 228, 584, 722
CspCI CAANNNNNGTGG 4 cut(s) 267, 302, 612, 647
CviJI RGCY 8 cut(s) 106, 171, 493, 507, 594, 667, 681, 761
CviKI_1 RGCY 8 cut(s) 106, 171, 493, 507, 594, 667, 681, 761
CviQI GTAC 3 cut(s) 228, 584, 722
DdeI CTNAG 3 cut(s) 12, 528, 615
DpnI GATC 7 cut(s) 75, 96, 123, 149, 294, 381, 468
DpnII GATC 7 cut(s) 73, 94, 121, 147, 292, 379, 466
Eam1104I CTCTTC 5 cut(s) 48, 64, 95, 513, 600
EarI CTCTTC 5 cut(s) 48, 64, 95, 513, 600
EciI GGCGGA 1 cut(s) 723
Eco47I GGWCC 5 cut(s) 160, 251, 332, 419, 731
Eco57I CTGAAG 1 cut(s) 119
Eco81I CCTNAGG 2 cut(s) 528, 615
Eco88I CYCGRG 1 cut(s) 701
EcoO109I RGGNCCY 1 cut(s) 160
FaiI YATR 4 cut(s) 191, 267, 272, 806
FalI AAGNNNNNCTT 3 cut(s) 37, 750, 782
FaqI GGGAC 1 cut(s) 595
FauI CCCGC 2 cut(s) 369, 456
FbaI TGATCA 2 cut(s) 73, 121
Fnu4HI GCNGC 2 cut(s) 365, 452
FokI GGATG 6 cut(s) 114, 302, 338, 389, 476, 647
Fsp4HI GCNGC 2 cut(s) 365, 452
GluI GCNGC 2 cut(s) 365, 452
HaeIII GGCC 5 cut(s) 106, 171, 507, 594, 681
HapII CCGG 3 cut(s) 249, 417, 678
HgaI GACGC 1 cut(s) 795
HinfI GANTC 4 cut(s) 511, 521, 608, 695
HpaII CCGG 3 cut(s) 249, 417, 678
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 2 cut(s) 99, 771
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 5 cut(s) 255, 336, 423, 723, 756
HpyCH4III ACNGT 2 cut(s) 285, 726
HpyCH4IV ACGT 2 cut(s) 115, 441
HpyCH4V TGCA 7 cut(s) 86, 215, 265, 386, 433, 560, 647
HpyF3I CTNAG 3 cut(s) 12, 528, 615
HpySE526I ACGT 2 cut(s) 115, 441
Ksp22I TGATCA 2 cut(s) 73, 121
Kzo9I GATC 7 cut(s) 73, 94, 121, 147, 292, 379, 466
Lsp1109I GCAGC 2 cut(s) 376, 463
LweI GCATC 2 cut(s) 202, 442
MaeII ACGT 2 cut(s) 115, 441
MalI GATC 7 cut(s) 75, 96, 123, 149, 294, 381, 468
MboI GATC 7 cut(s) 73, 94, 121, 147, 292, 379, 466
MboII GAAGA 6 cut(s) 35, 51, 112, 530, 617, 758
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 2 cut(s) 220, 649
MlyI GAGTC 3 cut(s) 530, 617, 704
MmeI TCCRAC 4 cut(s) 267, 354, 441, 612
MspI CCGG 3 cut(s) 249, 417, 678
NdeII GATC 7 cut(s) 73, 94, 121, 147, 292, 379, 466
NlaIV GGNNCC 4 cut(s) 243, 411, 534, 621
PfeI GAWTC 1 cut(s) 511
PkrI GCNGC 2 cut(s) 366, 453
PleI GAGTC 3 cut(s) 529, 616, 703
PpsI GAGTC 3 cut(s) 529, 616, 703
PpuMI RGGWCCY 1 cut(s) 160
Psp1406I AACGTT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 4 cut(s) 243, 411, 534, 621
PspPI GGNCC 9 cut(s) 160, 170, 251, 332, 419, 506, 593, 680, 731
PspPPI RGGWCCY 1 cut(s) 160
RsaI GTAC 3 cut(s) 229, 585, 723
RsaNI GTAC 3 cut(s) 228, 584, 722
SatI GCNGC 2 cut(s) 365, 452
Sau3AI GATC 7 cut(s) 73, 94, 121, 147, 292, 379, 466
Sau96I GGNCC 9 cut(s) 160, 170, 251, 332, 419, 506, 593, 680, 731
ScaI AGTACT 1 cut(s) 723
SchI GAGTC 3 cut(s) 530, 617, 704
SduI GDGCHC 1 cut(s) 501
SfaNI GCATC 2 cut(s) 202, 442
SfcI CTRYAG 1 cut(s) 804
SinI GGWCC 5 cut(s) 160, 251, 332, 419, 731
SmlI CTYRAG 3 cut(s) 137, 313, 400
SmoI CTYRAG 3 cut(s) 137, 313, 400
Sse9I AATT 2 cut(s) 220, 649
SsiI CCGC 3 cut(s) 362, 449, 734
TaaI ACNGT 2 cut(s) 285, 726
TaiI ACGT 2 cut(s) 118, 444
TaqI TCGA 1 cut(s) 546
TasI AATT 2 cut(s) 220, 649
TatI WGTACW 1 cut(s) 721
TfiI GAWTC 1 cut(s) 511
TscAI CASTG 1 cut(s) 508
TseI GCWGC 2 cut(s) 364, 451
TspGWI ACGGA 1 cut(s) 767
TspRI CASTG 1 cut(s) 508
VpaK11BI GGWCC 5 cut(s) 160, 251, 332, 419, 731
ZrmI AGTACT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.