Prupe.1G195600_v2.0.a1

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018527
Physical Location & Seq
Reverse (-)
18520086 .. 18524069
3984 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G195600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 708 bp
ATGGAGGGTGGTGATGGTGGACGTCAATTTCTAGACAGTGATGGGGGTTCTGATGATGAAACTTTTGAAAGCTTTCATGAACATAATTACTCTGTGGAAGATGACATGCCACTGCAGCATTGCAATTTTGTAAATGATGGTCTGATTTCAATGGAACCATCCACTGGGATGAGTTTTCAGTCATTGGATGATGCAAGAGATTTCTATTATGAATATGCAAAGCGTACAGGTTTCACCATTCGAACAAATCGAATCCGACACTCGTTAAAGAACATGGCTATAATAGGCCGGGACTTTGTTTGTTCAAGAGAAGGTTTTCGTGCCGCAAAGCATACACTTCGAAAAGACAGGGTTCTTCCTCCACGCCCAATCACAAGAGAAGGGTGCAAAGCCATGATAAGGTTGGCAGCAAGGGATGAAGGAAGATGGATAGTTACCAAGTTCATAAGAGAGCACAACCACAAACTAATGGCTCATTGTAAATTTCCTGGGGAGCTGCCAATCATCAATATACTCAGCGAGGTAGAGAAGGATAAAAAAATCCAGGATCTATACGATGAGCTCCAGCGTGAAAGAGAGCGATCTGCAGCATTCCAACAACAGTTATGCATGATTCTCAAGGACCTTGAGGAACATGCTGAATATATCTCTGTAAGAGTTGAAGACATTGTTAAGAGCATGAAAGAAATTGAACTTCGTGACCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

236

Amino Acids

27.42

Weight (kDa)

5.76

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 25
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 1 cut(s) 324
AclWI GGATC 1 cut(s) 555
AcsI RAATTY 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 2 cut(s) 164, 399
AgsI TTSAA 5 cut(s) 68, 150, 306, 662, 692
AjnI CCWGG 2 cut(s) 487, 543
AluBI AGCT 3 cut(s) 72, 496, 562
AluI AGCT 3 cut(s) 72, 496, 562
Alw21I GWGCWC 2 cut(s) 456, 564
AlwI GGATC 1 cut(s) 555
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 4 cut(s) 115, 407, 496, 587
ApoI RAATTY 1 cut(s) 482
Asp700I GAANNNNTTC 2 cut(s) 72, 315
AspS9I GGNCC 1 cut(s) 622
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 23, 226
AsuII TTCGAA 2 cut(s) 241, 340
AvaII GGWCC 1 cut(s) 622
BanII GRGCYC 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 2 cut(s) 456, 564
BbvI GCAGC 4 cut(s) 127, 419, 483, 599
BccI CCATC 5 cut(s) 8, 35, 131, 166, 420
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 2 cut(s) 489, 545
BcnI CCSGG 1 cut(s) 290
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 3 cut(s) 113, 585, 704
BisI GCNGC 5 cut(s) 116, 324, 408, 497, 588
BlsI GCNGC 5 cut(s) 117, 325, 409, 498, 589
Bme1390I CCNGG 3 cut(s) 290, 489, 545
Bme18I GGWCC 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 622
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 3 cut(s) 290, 489, 545
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 1 cut(s) 548
Bpu14I TTCGAA 2 cut(s) 241, 340
BpuEI CTTGAG 2 cut(s) 602, 647
BpuMI CCSGG 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 488
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 399
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 2 cut(s) 489, 545
BseDI CCNNGG 1 cut(s) 488
BseGI GGATG 4 cut(s) 158, 174, 193, 421
BseLI CCNNNNNNNGG 2 cut(s) 164, 399
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 529
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 4 cut(s) 127, 419, 483, 599
BshFI GGCC 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 456, 564
BsiSI CCGG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 164, 399
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 1 cut(s) 288
Bsp119I TTCGAA 2 cut(s) 241, 340
Bsp1286I GDGCHC 2 cut(s) 456, 564
Bsp143I GATC 2 cut(s) 547, 581
BspACI CCGC 1 cut(s) 324
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 528
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 156
BspMAI CTGCAG 2 cut(s) 117, 589
BspPI GGATC 1 cut(s) 555
BspT104I TTCGAA 2 cut(s) 241, 340
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 2 cut(s) 547, 581
BssNI GRCGYC 1 cut(s) 22
Bst2UI CCWGG 2 cut(s) 489, 545
Bst4CI ACNGT 2 cut(s) 38, 603
BstACI GRCGYC 1 cut(s) 22
BstBI TTCGAA 2 cut(s) 241, 340
BstDEI CTNAG 1 cut(s) 515
BstF5I GGATG 4 cut(s) 158, 174, 193, 421
BstKTI GATC 2 cut(s) 550, 584
BstMBI GATC 2 cut(s) 547, 581
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 2 cut(s) 489, 545
BstNSI RCATGY 2 cut(s) 109, 638
BstSCI CCNGG 3 cut(s) 288, 487, 543
BstSFI CTRYAG 3 cut(s) 113, 585, 704
BstV1I GCAGC 4 cut(s) 127, 419, 483, 599
BstV2I GAAGAC 1 cut(s) 669
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 1 cut(s) 288
BtsCI GGATG 4 cut(s) 158, 174, 193, 421
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 3 cut(s) 43, 110, 162
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 622
Csp6I GTAC 1 cut(s) 225
CviAII CATG 7 cut(s) 77, 106, 274, 394, 610, 635, 679
CviJI RGCY 7 cut(s) 72, 278, 288, 392, 473, 496, 562
CviKI_1 RGCY 7 cut(s) 72, 278, 288, 392, 473, 496, 562
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 515
DpnI GATC 2 cut(s) 549, 583
DpnII GATC 2 cut(s) 547, 581
Ecl136II GAGCTC 1 cut(s) 562
Eco24I GRGCYC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 622
Eco53kI GAGCTC 1 cut(s) 562
EcoICRI GAGCTC 1 cut(s) 562
EcoO109I RGGNCCY 1 cut(s) 622
EcoRII CCWGG 2 cut(s) 487, 543
EcoT22I ATGCAT 1 cut(s) 611
EcoT38I GRGCYC 1 cut(s) 564
FaeI CATG 7 cut(s) 80, 109, 277, 397, 613, 638, 682
FaqI GGGAC 1 cut(s) 305
FatI CATG 7 cut(s) 76, 105, 273, 393, 609, 634, 678
Fnu4HI GCNGC 5 cut(s) 116, 324, 408, 497, 588
FokI GGATG 4 cut(s) 145, 181, 200, 428
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 5 cut(s) 116, 324, 408, 497, 588
FspBI CTAG 1 cut(s) 32
GluI GCNGC 5 cut(s) 116, 324, 408, 497, 588
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 1 cut(s) 288
HapII CCGG 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 7 cut(s) 80, 109, 277, 397, 613, 638, 682
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 2 cut(s) 252, 613
HpaII CCGG 1 cut(s) 289
HphI GGTGA 2 cut(s) 23, 226
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 3 cut(s) 52, 144, 257
Hpy188III TCNNGA 4 cut(s) 32, 77, 306, 698
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 4 cut(s) 305, 374, 413, 523
HpyCH4III ACNGT 2 cut(s) 38, 603
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 7 cut(s) 115, 123, 194, 218, 387, 587, 609
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 515
HpySE526I ACGT 1 cut(s) 22
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 7 cut(s) 80, 109, 277, 397, 613, 638, 682
Kzo9I GATC 2 cut(s) 547, 581
LmnI GCTCC 2 cut(s) 493, 567
LpnPI CCDG 9 cut(s) 150, 213, 302, 334, 474, 501, 530, 557, 578
Lsp1109I GCAGC 4 cut(s) 127, 419, 483, 599
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 32
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 2 cut(s) 433, 698
MalI GATC 2 cut(s) 549, 583
MboI GATC 2 cut(s) 547, 581
MboII GAAGA 4 cut(s) 110, 347, 435, 674
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 2 cut(s) 456, 564
MluCI AATT 5 cut(s) 26, 85, 124, 482, 687
MmeI TCCRAC 2 cut(s) 280, 619
MnlI CCTC 3 cut(s) 369, 514, 622
Mph1103I ATGCAT 1 cut(s) 611
MroXI GAANNNNTTC 2 cut(s) 72, 315
MseI TTAA 2 cut(s) 266, 672
MslI CAYNNNNRTG 1 cut(s) 167
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 3 cut(s) 290, 489, 545
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 2 cut(s) 489, 545
MwoI GCNNNNNNNGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 290
NdeII GATC 2 cut(s) 547, 581
NlaIII CATG 7 cut(s) 80, 109, 277, 397, 613, 638, 682
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 698
NsiI ATGCAT 1 cut(s) 611
NspI RCATGY 2 cut(s) 109, 638
NspV TTCGAA 2 cut(s) 241, 340
PagI TCATGA 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PctI GAATGC 1 cut(s) 590
PdmI GAANNNNTTC 2 cut(s) 72, 315
PfeI GAWTC 2 cut(s) 252, 613
PflMI CCANNNNNTGG 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 543
PkrI GCNGC 5 cut(s) 117, 325, 409, 498, 589
PpuMI RGGWCCY 1 cut(s) 622
Psp124BI GAGCTC 1 cut(s) 564
Psp5II RGGWCCY 1 cut(s) 622
Psp6I CCWGG 2 cut(s) 487, 543
PspGI CCWGG 2 cut(s) 487, 543
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 622
PspPPI RGGWCCY 1 cut(s) 622
PstI CTGCAG 2 cut(s) 117, 589
PsuI RGATCY 1 cut(s) 547
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 564
SaqAI TTAA 2 cut(s) 266, 672
SatI GCNGC 5 cut(s) 116, 324, 408, 497, 588
Sau3AI GATC 2 cut(s) 547, 581
Sau96I GGNCC 1 cut(s) 622
ScrFI CCNGG 3 cut(s) 290, 489, 545
SduI GDGCHC 2 cut(s) 456, 564
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 3 cut(s) 113, 585, 704
SfuI TTCGAA 2 cut(s) 241, 340
SinI GGWCC 1 cut(s) 622
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 617, 626
SmoI CTYRAG 2 cut(s) 617, 626
Sse9I AATT 5 cut(s) 26, 85, 124, 482, 687
SsiI CCGC 1 cut(s) 324
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 3 cut(s) 288, 487, 543
TaaI ACNGT 2 cut(s) 38, 603
TaiI ACGT 1 cut(s) 25
TaqI TCGA 3 cut(s) 241, 250, 340
TasI AATT 5 cut(s) 26, 85, 124, 482, 687
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 2 cut(s) 252, 613
Tru1I TTAA 2 cut(s) 266, 672
Tru9I TTAA 2 cut(s) 266, 672
TscAI CASTG 3 cut(s) 43, 117, 169
TseFI GTSAC 1 cut(s) 698
TseI GCWGC 4 cut(s) 115, 407, 496, 587
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 7 cut(s) 65, 72, 93, 225, 432, 433, 695
TspRI CASTG 3 cut(s) 43, 117, 169
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 622
XapI RAATTY 1 cut(s) 482
XbaI TCTAGA 1 cut(s) 31
XceI RCATGY 2 cut(s) 109, 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmnI GAANNNNTTC 2 cut(s) 72, 315
XspI CTAG 1 cut(s) 32
ZraI GACGTC 1 cut(s) 23
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.