Prupe.1G195800_v2.0.a1

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0029163
Physical Location & Seq
Reverse (-)
18654026 .. 18657517
3492 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G195800.2_v2.0.a1.CDS.1

Sequence Viewer

Length: 738 bp
ATGATGGCAAGCACCTCAGGACAAGGATTTAGCCCTGAGAGAAACTACAGGTGTTGGCTAGATGAAACTTTTTCCAGTCATGAAACAGCTGATGACGAGCTATCATATACTCCTGATGTAGATAATAATTTGATTGAAACATCTAGCCAAGATTTTTCTTTAACTTTGGAACCGGTTATTGGGATGGAATTTGAATCAGCAGAAGACGCTAGAGATTTTTATGAGATGTATGGTAGGCATATGGGATTTACAATACGGAACAATCGTACCCGTCGTTCACTAAAAGATAACGCAATAATTGGCCGGGAGTTTGTTTGCTCAAAAGAAGGTTTCCGAGCAGAAAAATATGCAACGAGTCAAAACAGAGTTCTTCCATCACGGCCAGCCACCAGAAAGGGATGCAATGCAATGTTGAGGATAACGGCAAAGGATGGAGGCAAGTGGGTTATATATGGTTTTGTAAAAGAACATAATCATGAGTTGAATCCTAACAAAATACCACCTCGACGATCACATAGGATTGCATTCTGCGAGGATGAGAAGGACTTGAAAATCCGGGAACTGTCCACGGAGCTACATCGAGAGAAAAAGAAGTCTGCAGCTTATCAAGAGAAGCTACAGATTGTATTGAAATATATCGAGGAACATACTCAGAGGTTATCATTGAAAGTTGAACTGGCAACTAACAATATGAGAGAACTTGAATCTGAAGAGCAAGACAGTTCATACTCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

246

Amino Acids

28.48

Weight (kDa)

5.89

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029163)

Species Orthologous Gene IDs
prunus_persica Prupe.1G195800_v2.0.a1 Prupe.1G195800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 301, 380
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 179
AgeI ACCGGT 1 cut(s) 172
AgsI TTSAA 8 cut(s) 137, 194, 484, 550, 631, 667, 674, 704
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 5 cut(s) 89, 100, 574, 602, 616
AluI AGCT 5 cut(s) 89, 100, 574, 602, 616
AoxI GGCC 2 cut(s) 301, 380
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 1 cut(s) 188
AsiGI ACCGGT 1 cut(s) 172
AsuC2I CCSGG 2 cut(s) 305, 557
AxyI CCTNAGG 1 cut(s) 16
BaeI ACNNNNGTAYC 2 cut(s) 250, 283
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 611
BccI CCATC 3 cut(s) 178, 382, 425
BceAI ACGGC 2 cut(s) 395, 438
BcnI CCSGG 2 cut(s) 305, 557
BfaI CTAG 4 cut(s) 59, 144, 210, 736
BfmI CTRYAG 3 cut(s) 46, 597, 617
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
Bme1390I CCNGG 2 cut(s) 305, 557
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 2 cut(s) 305, 557
BmsI GCATC 1 cut(s) 389
BpiI GAAGAC 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 305, 557
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 2 cut(s) 75, 681
Bse21I CCTNAGG 1 cut(s) 16
Bse3DI GCAATG 2 cut(s) 409, 414
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 4 cut(s) 189, 404, 436, 541
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 2 cut(s) 409, 414
BseMII CTCAG 3 cut(s) 27, 30, 665
BseNI ACTGG 2 cut(s) 75, 681
BseXI GCAGC 1 cut(s) 611
BshFI GGCC 2 cut(s) 303, 382
BshTI ACCGGT 1 cut(s) 172
BsiSI CCGG 3 cut(s) 173, 304, 556
BslI CCNNNNNNNGG 1 cut(s) 179
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 2 cut(s) 303, 382
Bsp143I GATC 1 cut(s) 509
BspANI GGCC 2 cut(s) 303, 382
BspCNI CTCAG 3 cut(s) 28, 29, 664
BspHI TCATGA 2 cut(s) 79, 475
BspLI GGNNCC 1 cut(s) 171
BspMAI CTGCAG 1 cut(s) 601
BspQI GCTCTTC 1 cut(s) 705
BsrDI GCAATG 2 cut(s) 409, 414
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 2 cut(s) 75, 681
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 564, 722
Bst6I CTCTTC 1 cut(s) 705
BstC8I GCNNGC 2 cut(s) 10, 384
BstDEI CTNAG 4 cut(s) 16, 36, 651, 730
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 4 cut(s) 189, 404, 436, 541
BstKTI GATC 1 cut(s) 512
BstMBI GATC 1 cut(s) 509
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 303, 555
BstSFI CTRYAG 3 cut(s) 46, 597, 617
BstV1I GCAGC 1 cut(s) 611
BstV2I GAAGAC 1 cut(s) 210
Bsu36I CCTNAGG 1 cut(s) 16
BsuRI GGCC 2 cut(s) 303, 382
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 4 cut(s) 189, 404, 436, 541
Cac8I GCNNGC 2 cut(s) 10, 384
CciI TCATGA 2 cut(s) 79, 475
Cfr10I RCCGGY 1 cut(s) 172
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 267
CspAI ACCGGT 1 cut(s) 172
CviAII CATG 2 cut(s) 80, 476
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 4 cut(s) 16, 36, 651, 730
DpnI GATC 1 cut(s) 511
DpnII GATC 1 cut(s) 509
EaeI YGGCCR 2 cut(s) 301, 380
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
Eco57I CTGAAG 1 cut(s) 729
Eco81I CCTNAGG 1 cut(s) 16
FaeI CATG 2 cut(s) 83, 479
FatI CATG 2 cut(s) 79, 475
FauNDI CATATG 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 600
FokI GGATG 4 cut(s) 196, 411, 443, 548
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 4 cut(s) 59, 144, 210, 736
GluI GCNGC 1 cut(s) 600
HaeIII GGCC 2 cut(s) 303, 382
HapII CCGG 3 cut(s) 173, 304, 556
HgaI GACGC 1 cut(s) 215
Hin1II CATG 2 cut(s) 83, 479
HinfI GANTC 4 cut(s) 194, 355, 484, 704
HpaII CCGG 3 cut(s) 173, 304, 556
Hpy166II GTNNAC 2 cut(s) 278, 567
Hpy188I TCNGA 4 cut(s) 335, 654, 709, 733
Hpy188III TCNNGA 6 cut(s) 18, 80, 113, 476, 581, 608
Hpy8I GTNNAC 2 cut(s) 278, 567
Hpy99I CGWCG 2 cut(s) 276, 510
HpyAV CCTTC 2 cut(s) 320, 535
HpyCH4III ACNGT 2 cut(s) 564, 722
HpyCH4V TGCA 5 cut(s) 350, 402, 407, 524, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 4 cut(s) 16, 36, 651, 730
Hsp92II CATG 2 cut(s) 83, 479
Kzo9I GATC 1 cut(s) 509
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 1 cut(s) 571
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 1 cut(s) 389
MaeI CTAG 4 cut(s) 59, 144, 210, 736
MalI GATC 1 cut(s) 511
MboI GATC 1 cut(s) 509
MboII GAAGA 3 cut(s) 215, 362, 722
MluCI AATT 3 cut(s) 127, 188, 297
MlyI GAGTC 1 cut(s) 364
MnlI CCTC 7 cut(s) 25, 408, 428, 513, 526, 634, 648
MseI TTAA 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 3 cut(s) 173, 304, 556
MspR9I CCNGG 2 cut(s) 305, 557
Mva1269I GAATGC 1 cut(s) 524
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 2 cut(s) 305, 557
NdeI CATATG 1 cut(s) 240
NdeII GATC 1 cut(s) 509
NlaIII CATG 2 cut(s) 83, 479
NlaIV GGNNCC 1 cut(s) 171
PagI TCATGA 2 cut(s) 79, 475
PciSI GCTCTTC 1 cut(s) 705
PcsI WCGNNNNNNNCGW 2 cut(s) 262, 271
PctI GAATGC 1 cut(s) 524
PfeI GAWTC 3 cut(s) 194, 484, 704
PfoI TCCNGGA 1 cut(s) 555
PinAI ACCGGT 1 cut(s) 172
PkrI GCNGC 1 cut(s) 601
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 171
PsrI GAACNNNNNNTAC 2 cut(s) 259, 291
PstI CTGCAG 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 474
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 1 cut(s) 509
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 2 cut(s) 305, 557
SfaNI GCATC 1 cut(s) 389
SfcI CTRYAG 3 cut(s) 46, 597, 617
SmiMI CAYNNNNRTG 1 cut(s) 474
Sse9I AATT 3 cut(s) 127, 188, 297
SspMI CTAG 4 cut(s) 59, 144, 210, 736
StyD4I CCNGG 2 cut(s) 303, 555
TaaI ACNGT 2 cut(s) 564, 722
TaqI TCGA 3 cut(s) 505, 580, 639
TasI AATT 3 cut(s) 127, 188, 297
TfiI GAWTC 3 cut(s) 194, 484, 704
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TseI GCWGC 1 cut(s) 599
TspDTI ATGAA 3 cut(s) 78, 96, 714
TspGWI ACGGA 2 cut(s) 271, 584
XapI RAATTY 1 cut(s) 188
XspI CTAG 4 cut(s) 59, 144, 210, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.