Prupe.1G196200_v2.0.a1

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
18727686 .. 18730075
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G196200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1347 bp
ATGAGTACCTTGAGGTCGCAGTCTAGGTGGTGCCCTCTTGAACAACAGCTTCTTCAGAAAAGGAATTCCCGAGAAAATTGGGACCGGTTCATACCAAACCGGTCCGCCATGGACTTTGATTATGCATTTTACATGCTTACTCATCAGGGTAGTAGTACTAGGAAAGGTAAGGAAAACCCACCTAGATATGGAGTAGGCTATCGGAAGCAGTTGGCTGAGGCCATGAACATGAACCGCAGTAGAATTCTTGCTTTCAAGAACAAGACTCCTCCCCCTGTAGAGCTCTTCCCAAGCAACTTCTCTTCAGATAAACCTACTGAATCAAACCCCCCAAAGGCACGAAGAAGATATATTTCTCAAAGTGCAGACAGAACACTTGATGCTCCCGACCTTATAGATGATTACTACCTTAATTTGTTGGATTGGGGAAGCTCCAATGTTCTTGCAATAGCTCTTGCAAACAAAGTTTATTTGTGGGATGCTACAGATGATTCTACTTGGGAACTGGCCACATTTGAGGATGAAAGGGGACCTGTTACCAGCGTCAACTGGGCTATTGATGGACGCCAGATTGCCATTGGACTGAACAATTCCGAAGTAGAGCTATGGGATACAGCTGCCAGTTCTCATGTGATAACCTTGAGAGGTTGCCACCTATCGGGAGTAGGCTCACTGGCATGGAACAATCACATTCTTACAACTGGAGGAATGGATGGCCGCATCGTTAACAATGATGTAAGAATTGGATCCCACATTGTTGTTGAGACATACAGAGGACATGAGCAAGAAGTTTGTGGGCTTAAATGGTCGGCTTCGGGCCAGCAATTAGCAAGTGGAGGAAATGATAACCTGCTCCATATATGGGACAACAGATCATATTCACGAACACGGTGGCTTCACAGGCTTCAAGACCATACAGCTGCTGTAAAAGCCCTTGCTTGGTGTCCTTTCCAGAGAAATTTGCTAGCTTCTGGTGGAGGTGGGAATGATGATGGGTGCATAAAGTTCTGGAACACTCACACAGGTGCATGCCTGAACTCTGTTGACACTGGCTCTGAGGTTTGTGCTTTGCTGTGGAATATGAATGAACGAGAGCTGCTTAGCGCACATGGGTTTTCTCAGAATCAGCTTACTCTTTGGAAATACCCATCAATGTTTAGAATTGCAGAACTCACTGGTCATACTTCTACAGTCCTTTATATGGCTCAGAGCCCAAATGGTTGCACAGTAGCATCAGCAGCTCATGAAACACTGAAGTTATGGAATGCTTTTGGAGACCCTAAGGAGGTTAAACCAGCTCCCAAAGCTGATCCTGAGCCTTTTGCCCATTTGAATCGTATCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

449

Amino Acids

50.31

Weight (kDa)

6.95

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 858
AccB1I GGYRCC 1 cut(s) 30
AciI CCGC 3 cut(s) 105, 235, 718
AclWI GGATC 3 cut(s) 741, 754, 1304
AcoI YGGCCR 2 cut(s) 507, 715
AcsI RAATTY 3 cut(s) 64, 243, 958
AcuI CTGAAG 3 cut(s) 38, 288, 1274
AcyI GRCGYC 1 cut(s) 565
AfaI GTAC 2 cut(s) 7, 157
AfiI CCNNNNNNNGG 7 cut(s) 188, 334, 658, 862, 939, 1201, 1285
AgeI ACCGGT 2 cut(s) 84, 99
AgsI TTSAA 4 cut(s) 41, 256, 908, 1333
AleI CACNNNNGTG 1 cut(s) 1023
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 2 cut(s) 758, 1269
AlwI GGATC 3 cut(s) 741, 754, 1304
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 1 cut(s) 69
AoxI GGCC 4 cut(s) 219, 507, 715, 817
ApeKI GCWGC 4 cut(s) 617, 920, 1096, 1238
ApoI RAATTY 3 cut(s) 64, 243, 958
AsiGI ACCGGT 2 cut(s) 84, 99
AspLEI GCGC 1 cut(s) 1106
AspS9I GGNCC 4 cut(s) 82, 102, 530, 817
AsuNHI GCTAGC 1 cut(s) 964
AvaI CYCGRG 1 cut(s) 69
AvaII GGWCC 3 cut(s) 82, 102, 530
AxyI CCTNAGG 1 cut(s) 1281
BaeGI GKGCMC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 509
BamHI GGATCC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 30
BanII GRGCYC 2 cut(s) 285, 1214
Bbv12I GWGCWC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 4 cut(s) 604, 907, 1083, 1250
BccI CCATC 4 cut(s) 554, 707, 986, 1156
BciVI GTATCC 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 758, 1269
BfaI CTAG 4 cut(s) 24, 159, 183, 965
BfmI CTRYAG 3 cut(s) 276, 483, 1188
BfuAI ACCTGC 1 cut(s) 858
BfuI GTATCC 1 cut(s) 604
BisI GCNGC 5 cut(s) 618, 718, 921, 1097, 1239
BlpI GCTNAGC 1 cut(s) 1100
BlsI GCNGC 5 cut(s) 619, 719, 922, 1098, 1240
BmcAI AGTACT 1 cut(s) 157
Bme18I GGWCC 3 cut(s) 82, 102, 530
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 4 cut(s) 82, 102, 530, 817
BmiI GGNNCC 4 cut(s) 32, 83, 531, 748
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 4 cut(s) 370, 469, 729, 1241
BmtI GCTAGC 1 cut(s) 968
BmuI ACTGGG 1 cut(s) 559
BpmI CTGGAG 1 cut(s) 723
Bpu10I CCTNAGC 2 cut(s) 216, 1314
Bpu1102I GCTNAGC 1 cut(s) 1100
BpuEI CTTGAG 2 cut(s) 31, 661
BsaHI GRCGYC 1 cut(s) 565
BsaI GGTCTC 1 cut(s) 1269
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 2 cut(s) 84, 99
Bsc4I CCNNNNNNNGG 7 cut(s) 188, 334, 658, 862, 939, 1201, 1285
Bse118I RCCGGY 2 cut(s) 84, 99
Bse1I ACTGG 7 cut(s) 510, 554, 621, 678, 706, 1054, 1180
Bse21I CCTNAGG 1 cut(s) 1281
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 3 cut(s) 484, 526, 718
BseLI CCNNNNNNNGG 7 cut(s) 188, 334, 658, 862, 939, 1201, 1285
BseMII CTCAG 5 cut(s) 207, 1047, 1133, 1220, 1305
BseNI ACTGG 7 cut(s) 510, 554, 621, 678, 706, 1054, 1180
BseRI GAGGAG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 4 cut(s) 604, 907, 1083, 1250
BsgI GTGCAG 1 cut(s) 384
BshFI GGCC 4 cut(s) 221, 509, 717, 819
BshNI GGYRCC 1 cut(s) 30
BshTI ACCGGT 2 cut(s) 84, 99
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 2 cut(s) 85, 100
BslFI GGGAC 3 cut(s) 95, 543, 878
BslI CCNNNNNNNGG 7 cut(s) 188, 334, 658, 862, 939, 1201, 1285
BsmAI GTCTC 2 cut(s) 758, 1269
BsmFI GGGAC 3 cut(s) 95, 543, 878
BsmI GAATGC 1 cut(s) 1270
BsnI GGCC 4 cut(s) 221, 509, 717, 819
Bso31I GGTCTC 1 cut(s) 1269
BsoBI CYCGRG 1 cut(s) 69
Bsp1286I GDGCHC 3 cut(s) 35, 285, 1214
Bsp143I GATC 3 cut(s) 746, 872, 1309
Bsp1720I GCTNAGC 1 cut(s) 1100
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 3 cut(s) 105, 235, 718
BspANI GGCC 4 cut(s) 221, 509, 717, 819
BspCNI CTCAG 5 cut(s) 208, 1048, 1132, 1219, 1306
BspHI TCATGA 1 cut(s) 1243
BspLI GGNNCC 4 cut(s) 32, 83, 531, 748
BspMI ACCTGC 1 cut(s) 858
BspOI GCTAGC 1 cut(s) 968
BspPI GGATC 3 cut(s) 741, 754, 1304
BspQI GCTCTTC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 1269
BsrFI RCCGGY 2 cut(s) 84, 99
BsrI ACTGG 7 cut(s) 510, 554, 621, 678, 706, 1054, 1180
BssAI RCCGGY 2 cut(s) 84, 99
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 3 cut(s) 746, 872, 1309
BssNI GRCGYC 1 cut(s) 565
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 891, 1192, 1228
Bst6I CTCTTC 2 cut(s) 290, 307
BstACI GRCGYC 1 cut(s) 565
BstC8I GCNNGC 3 cut(s) 821, 966, 1030
BstDEI CTNAG 7 cut(s) 216, 1056, 1100, 1119, 1206, 1281, 1314
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 3 cut(s) 484, 526, 718
BstHHI GCGC 1 cut(s) 1106
BstKTI GATC 3 cut(s) 749, 875, 1312
BstMAI GTCTC 2 cut(s) 758, 1269
BstMBI GATC 3 cut(s) 746, 872, 1309
BstMWI GCNNNNNNNGC 4 cut(s) 901, 929, 1238, 1304
BstNSI RCATGY 2 cut(s) 136, 1032
BstSFI CTRYAG 3 cut(s) 276, 483, 1188
BstSLI GKGCMC 1 cut(s) 35
BstV1I GCAGC 4 cut(s) 604, 907, 1083, 1250
BstX2I RGATCY 1 cut(s) 746
BstYI RGATCY 1 cut(s) 746
Bsu36I CCTNAGG 1 cut(s) 1281
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 4 cut(s) 221, 509, 717, 819
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 3 cut(s) 484, 526, 718
BtsIMutI CAGTG 5 cut(s) 671, 1047, 1173, 1250, 1342
BveI ACCTGC 1 cut(s) 858
Cac8I GCNNGC 3 cut(s) 821, 966, 1030
CaiI CAGNNNCTG 1 cut(s) 923
CciI TCATGA 1 cut(s) 1243
CfoI GCGC 1 cut(s) 1106
Cfr10I RCCGGY 2 cut(s) 84, 99
Cfr13I GGNCC 4 cut(s) 82, 102, 530, 817
CpoI CGGWCCG 1 cut(s) 102
CseI GACGC 2 cut(s) 532, 573
Csp6I GTAC 2 cut(s) 6, 156
CspAI ACCGGT 2 cut(s) 84, 99
CspI CGGWCCG 1 cut(s) 102
CviQI GTAC 2 cut(s) 6, 156
DdeI CTNAG 7 cut(s) 216, 1056, 1100, 1119, 1206, 1281, 1314
DpnI GATC 3 cut(s) 748, 874, 1311
DpnII GATC 3 cut(s) 746, 872, 1309
EaeI YGGCCR 2 cut(s) 507, 715
Eam1104I CTCTTC 2 cut(s) 290, 307
EarI CTCTTC 2 cut(s) 290, 307
EciI GGCGGA 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 2 cut(s) 285, 1214
Eco31I GGTCTC 1 cut(s) 1269
Eco47I GGWCC 3 cut(s) 82, 102, 530
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 3 cut(s) 38, 288, 1274
Eco81I CCTNAGG 1 cut(s) 1281
Eco88I CYCGRG 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 530
EcoRI GAATTC 2 cut(s) 64, 243
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 127
EcoT38I GRGCYC 2 cut(s) 285, 1214
ErhI CCWWGG 1 cut(s) 108
FaqI GGGAC 3 cut(s) 95, 543, 878
Fnu4HI GCNGC 5 cut(s) 618, 718, 921, 1097, 1239
FokI GGATG 3 cut(s) 491, 533, 725
FriOI GRGCYC 2 cut(s) 285, 1214
Fsp4HI GCNGC 5 cut(s) 618, 718, 921, 1097, 1239
FspBI CTAG 4 cut(s) 24, 159, 183, 965
GlaI GCGC 1 cut(s) 1105
GluI GCNGC 5 cut(s) 618, 718, 921, 1097, 1239
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 4 cut(s) 221, 509, 717, 819
HapII CCGG 2 cut(s) 85, 100
HgaI GACGC 2 cut(s) 532, 573
HhaI GCGC 1 cut(s) 1106
Hin1I GRCGYC 1 cut(s) 565
Hin6I GCGC 1 cut(s) 1104
HinP1I GCGC 1 cut(s) 1104
HincII GTYRAC 3 cut(s) 547, 727, 1045
HindII GTYRAC 3 cut(s) 547, 727, 1045
HinfI GANTC 5 cut(s) 265, 320, 491, 1123, 1333
HpaI GTTAAC 1 cut(s) 727
HpaII CCGG 2 cut(s) 85, 100
Hpy166II GTNNAC 3 cut(s) 547, 727, 1045
Hpy188I TCNGA 7 cut(s) 57, 204, 307, 595, 1057, 1122, 1209
Hpy8I GTNNAC 3 cut(s) 547, 727, 1045
HpyCH4III ACNGT 3 cut(s) 891, 1192, 1228
HpyCH4V TGCA 8 cut(s) 125, 365, 446, 458, 999, 1028, 1166, 1224
HpyF10VI GCNNNNNNNGC 4 cut(s) 901, 929, 1238, 1304
HpyF3I CTNAG 7 cut(s) 216, 1056, 1100, 1119, 1206, 1281, 1314
Hsp92I GRCGYC 1 cut(s) 565
HspAI GCGC 1 cut(s) 1104
KspAI GTTAAC 1 cut(s) 727
Kzo9I GATC 3 cut(s) 746, 872, 1309
LguI GCTCTTC 1 cut(s) 290
LmnI GCTCC 4 cut(s) 388, 437, 858, 1303
Lsp1109I GCAGC 4 cut(s) 604, 907, 1083, 1250
LweI GCATC 4 cut(s) 370, 469, 729, 1241
MaeI CTAG 4 cut(s) 24, 159, 183, 965
MaeIII GTNAC 1 cut(s) 535
MalI GATC 3 cut(s) 748, 874, 1311
MboI GATC 3 cut(s) 746, 872, 1309
MboII GAAGA 5 cut(s) 44, 277, 294, 354, 357
MflI RGATCY 1 cut(s) 746
MhlI GDGCHC 3 cut(s) 35, 285, 1214
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 9 cut(s) 64, 76, 243, 412, 589, 741, 824, 958, 1161
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 399
Mox20I TGGCCA 1 cut(s) 509
Mph1103I ATGCAT 1 cut(s) 127
MscI TGGCCA 1 cut(s) 509
MseI TTAA 4 cut(s) 411, 726, 801, 1290
MslI CAYNNNNRTG 3 cut(s) 227, 676, 1023
Msp20I TGGCCA 1 cut(s) 509
MspA1I CMGCKG 2 cut(s) 617, 920
MspI CCGG 2 cut(s) 85, 100
Mva1269I GAATGC 1 cut(s) 1270
MwoI GCNNNNNNNGC 4 cut(s) 901, 929, 1238, 1304
NcoI CCATGG 1 cut(s) 108
NdeII GATC 3 cut(s) 746, 872, 1309
NheI GCTAGC 1 cut(s) 964
NlaIV GGNNCC 4 cut(s) 32, 83, 531, 748
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 2 cut(s) 136, 1032
OliI CACNNNNGTG 1 cut(s) 1023
PaeI GCATGC 1 cut(s) 1032
PagI TCATGA 1 cut(s) 1243
PciSI GCTCTTC 1 cut(s) 290
PctI GAATGC 1 cut(s) 1270
PfeI GAWTC 4 cut(s) 320, 491, 1123, 1333
PinAI ACCGGT 2 cut(s) 84, 99
PkrI GCNGC 5 cut(s) 619, 719, 922, 1098, 1240
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 530
Psp124BI GAGCTC 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 530
PspN4I GGNNCC 4 cut(s) 32, 83, 531, 748
PspPI GGNCC 4 cut(s) 82, 102, 530, 817
PspPPI RGGWCCY 1 cut(s) 530
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 1 cut(s) 746
PvuII CAGCTG 2 cut(s) 617, 920
RsaI GTAC 2 cut(s) 7, 157
RsaNI GTAC 2 cut(s) 6, 156
RseI CAYNNNNRTG 3 cut(s) 227, 676, 1023
Rsr2I CGGWCCG 1 cut(s) 102
RsrII CGGWCCG 1 cut(s) 102
SacI GAGCTC 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 290
SaqAI TTAA 4 cut(s) 411, 726, 801, 1290
SatI GCNGC 5 cut(s) 618, 718, 921, 1097, 1239
Sau3AI GATC 3 cut(s) 746, 872, 1309
Sau96I GGNCC 4 cut(s) 82, 102, 530, 817
ScaI AGTACT 1 cut(s) 157
SchI GAGTC 1 cut(s) 259
SduI GDGCHC 3 cut(s) 35, 285, 1214
SfaNI GCATC 4 cut(s) 370, 469, 729, 1241
SfcI CTRYAG 3 cut(s) 276, 483, 1188
SinI GGWCC 3 cut(s) 82, 102, 530
SmiMI CAYNNNNRTG 3 cut(s) 227, 676, 1023
SmlI CTYRAG 2 cut(s) 10, 640
SmoI CTYRAG 2 cut(s) 10, 640
SphI GCATGC 1 cut(s) 1032
Sse9I AATT 9 cut(s) 64, 76, 243, 412, 589, 741, 824, 958, 1161
SsiI CCGC 3 cut(s) 105, 235, 718
SspMI CTAG 4 cut(s) 24, 159, 183, 965
SstI GAGCTC 1 cut(s) 285
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 891, 1192, 1228
TasI AATT 9 cut(s) 64, 76, 243, 412, 589, 741, 824, 958, 1161
TatI WGTACW 1 cut(s) 155
TauI GCSGC 1 cut(s) 720
TfiI GAWTC 4 cut(s) 320, 491, 1123, 1333
Tru1I TTAA 4 cut(s) 411, 726, 801, 1290
Tru9I TTAA 4 cut(s) 411, 726, 801, 1290
TscAI CASTG 4 cut(s) 678, 1054, 1180, 1257
TseI GCWGC 4 cut(s) 617, 920, 1096, 1238
TspDTI ATGAA 7 cut(s) 79, 239, 245, 537, 1097, 1101, 1260
TspRI CASTG 4 cut(s) 678, 1054, 1180, 1257
VpaK11BI GGWCC 3 cut(s) 82, 102, 530
XapI RAATTY 3 cut(s) 64, 243, 958
XceI RCATGY 2 cut(s) 136, 1032
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
XspI CTAG 4 cut(s) 24, 159, 183, 965
ZrmI AGTACT 1 cut(s) 157
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.