Prupe.1G198100_v2.0.a1

negative regulation of ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
18983337 .. 18983582
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G198100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 246 bp
ATGGCCGACGCCGACGAGCTTGACGAAATCGTCCGCCGAAAGCTGGGGGCTTTGATCTCAAGAGTTACCCAGGAAATCGAATTCCGTTGGGGCGACGAGTGCCTTCCACTGCCGAGAATACTTCTTCATGTTCTGGATCCAGTGGAGGCCCTCATTTCTTTTGAATTGCAGAGAATAAAAAACTCTCCGACTTGGGAAGCCGCGGAAAGAAAGCGGAAAATCAGAAATTTGATGGCCATGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0002831 GO:0002833 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007088 GO:0007113 GO:0007127 GO:0007135 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009553 GO:0009561 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010224 GO:0010564 GO:0010605 GO:0016043 GO:0019222 GO:0022402 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031347 GO:0031349 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0034641 GO:0034645 GO:0040020 GO:0042023 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048468 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051321 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0051445 GO:0051726 GO:0051783 GO:0060255 GO:0061458 GO:0061982 GO:0061983 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0090558 GO:0090626 GO:0140013 GO:1900424 GO:1900426 GO:1901360 GO:1901576 GO:1903046 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.51

Weight (kDa)

6.58

Isoelectric Point (pI)

60.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 29
AccII CGCG 1 cut(s) 203
AciI CCGC 4 cut(s) 34, 201, 203, 214
AclWI GGATC 2 cut(s) 131, 144
AcoI YGGCCR 2 cut(s) 3, 234
AcsI RAATTY 2 cut(s) 80, 226
AcyI GRCGYC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 2 cut(s) 19, 43
AluI AGCT 2 cut(s) 19, 43
AlwI GGATC 2 cut(s) 131, 144
AoxI GGCC 3 cut(s) 3, 147, 234
ApoI RAATTY 2 cut(s) 80, 226
AspS9I GGNCC 1 cut(s) 148
BalI TGGCCA 1 cut(s) 236
BamHI GGATCC 1 cut(s) 136
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 71
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 69, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 69, 201
BseLI CCNNNNNNNGG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 140
BseYI CCCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 3 cut(s) 5, 149, 236
BslI CCNNNNNNNGG 1 cut(s) 43
BsnI GGCC 3 cut(s) 5, 149, 236
Bsp143I GATC 2 cut(s) 54, 136
BspACI CCGC 4 cut(s) 34, 201, 203, 214
BspANI GGCC 3 cut(s) 5, 149, 236
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 2 cut(s) 131, 144
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 69, 201
BssMI GATC 2 cut(s) 54, 136
BssNI GRCGYC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 201
BstFNI CGCG 1 cut(s) 203
BstKTI GATC 2 cut(s) 57, 139
BstMBI GATC 2 cut(s) 54, 136
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstUI CGCG 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 3 cut(s) 5, 149, 236
BtgI CCRYGG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 2 cut(s) 107, 147
Cfr13I GGNCC 1 cut(s) 148
Cfr42I CCGCGG 1 cut(s) 204
CseI GACGC 1 cut(s) 17
CviAII CATG 2 cut(s) 128, 238
CviJI RGCY 7 cut(s) 5, 19, 43, 50, 149, 200, 236
CviKI_1 RGCY 7 cut(s) 5, 19, 43, 50, 149, 200, 236
DpnI GATC 2 cut(s) 56, 138
DpnII GATC 2 cut(s) 54, 136
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
EaeI YGGCCR 2 cut(s) 3, 234
EciI GGCGGA 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 131, 241
FaiI YATR 2 cut(s) 129, 239
FatI CATG 2 cut(s) 127, 237
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 47
HaeIII GGCC 3 cut(s) 5, 149, 236
HgaI GACGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 131, 241
Hpy188I TCNGA 2 cut(s) 189, 224
Hpy188III TCNNGA 2 cut(s) 60, 134
Hpy99I CGWCG 3 cut(s) 11, 17, 98
HpyAV CCTTC 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 131, 241
KspI CCGCGG 1 cut(s) 204
Kzo9I GATC 2 cut(s) 54, 136
LpnPI CCDG 5 cut(s) 29, 56, 83, 119, 153
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 56, 138
MboI GATC 2 cut(s) 54, 136
MboII GAAGA 1 cut(s) 116
MflI RGATCY 1 cut(s) 136
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 3 cut(s) 80, 164, 226
MluNI TGGCCA 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 2 cut(s) 139, 161
Mox20I TGGCCA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 236
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 2 cut(s) 54, 136
NlaIII CATG 2 cut(s) 131, 241
NlaIV GGNNCC 1 cut(s) 138
NmeAIII GCCGAG 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 148
PsuI RGATCY 1 cut(s) 136
SacII CCGCGG 1 cut(s) 204
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 54, 136
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 71
SetI ASST 2 cut(s) 21, 45
Sfr303I CCGCGG 1 cut(s) 204
SgrBI CCGCGG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 3 cut(s) 80, 164, 226
SsiI CCGC 4 cut(s) 34, 201, 203, 214
StyD4I CCNGG 1 cut(s) 69
TaqI TCGA 1 cut(s) 78
TasI AATT 3 cut(s) 80, 164, 226
TauI GCSGC 1 cut(s) 203
TscAI CASTG 2 cut(s) 114, 147
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 2 cut(s) 114, 147
XapI RAATTY 2 cut(s) 80, 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.