Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19176131 .. 19179422

Gene Structure 3292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G199100.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGCATCTGCTATTTTCTTCATAATTTTATCATTTTTTCTTGTTCCTACAAGAACCCAAGAAAAAGGATTCATATCTGTTGTCATATCCAGCAAGGGGCTTGAGTTTTCCAAGGACTTGCTAATAGAGCAGGCTGTTTCCTCTATAATCCCCCTTCAACTGCCTCAGATTGAAAAGTCTGTGAAAATCCCACTTGTTGGCCGAGTTCATGTTACTGGTGACTCAGGTATTGCTTTAATTGCTTCAGGAGCCACGGCAAATTTGAGTATGGATTGGTGGTATTCTTATAGCAGTTGGTTATTTGATATTTCAGATAATGGGGACGCCTCCATTCAGGTTGAAGGTATGGAAGTGGGTGTTACCTTAGTTTTGAATGGCCAAGAAGGAACTCTTAAGCTGTCTGTTCTGGAATGCGGATGCTATGTGAAAGATATCTCCATTAAGTTAGATGGTGGAGCATCTTGGCTTTACCAAGGGTTAGTGGATGCTTTTGAAGGTCAAATAGTTTCTGCAGTTGAAGACAATATTTCCAAGAAAATCAGAGAAGGAATAATGAAGCTTGACTCCTTACTGAAATCACTTCCAAAACAAATCGCACTGGATGACATTGCTGCTTTGAATGTTACATTTGTGGGCAATCCTGTATTGAGTAATTCTTCCATTGAATTTCATATCAATGGTCTATTCATGGCTCCCAATGATGATTTTGCTTCCAGCCTATACAATAAAGGTTCACTAGATCATGTTCTCTTCAATGCTCCAGCTAAGATGGTTGAGATATCATTACATGAAAATGTCTTTAGCTCAGTGTCCTTAGTTTTCTTCAATGAGAATTATATGCAATGGGTGATCAACAAAACACCAGACCAGTCCCTTTTGAATACTGCTGGATGGAAATACATTGTTCCTCAACTGTACAAGCAGTATCCCAATGAAGATATGGAGCTTAATATATCTGTATCTTCTCCACCAATAATGACAGCTGTTAACAATGGCATTAATATCACTGTTTACTCTGATGTGACAATTAGTGTCATGGATGCTGATGAAGTAATACCGGTTGCGTGCATATCATTGGAGAATCATGCTTCATGTTTTCCAGATATCTTGATAAATAAACTAGCTGGTACTATTAAATTGAATCATGTTACTGCATATTTGAAGTGGAGCAAAATTGGTAACCTTCACATGCATCTTGTTCAGGCTGTATTGTCAACAATTCTCAAAACTGTTGTGGTGCCATATGTGAATTTACACCTCTGGAAAGGACTACCTTTACGACTTCCTCATGGGTTTACACTACATAATTCTGAAATCTTCTCCATCAATTTAAGGCTTATGATATTCAGCGACGTTGCGATTGCAGAACAATCTCCAACATCAGTAAGCAGACCTTTAATTTCAATCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

471

Amino Acids

51.69

Weight (kDa)

5.29

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1237
AccB7I	CCANNNNNTGG	1 cut(s)	197
AciI	CCGC	1 cut(s)	414
AcoI	YGGCCR	2 cut(s)	199, 376
AcsI	RAATTY	3 cut(s)	259, 665, 1249
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	2 cut(s)	917, 1129
AfiI	CCNNNNNNNGG	2 cut(s)	96, 197
AflII	CTTAAG	1 cut(s)	392
AgeI	ACCGGT	1 cut(s)	1057
AluBI	AGCT	7 cut(s)	397, 559, 764, 804, 946, 983, 1124
AluI	AGCT	7 cut(s)	397, 559, 764, 804, 946, 983, 1124
AoxI	GGCC	2 cut(s)	199, 376
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	3 cut(s)	259, 665, 1249
AseI	ATTAAT	1 cut(s)	999
AsiGI	ACCGGT	1 cut(s)	1057
AsuHPI	GGTGA	2 cut(s)	230, 859
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	1237
BbsI	GAAGAC	1 cut(s)	525
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	4 cut(s)	443, 763, 885, 1331
BceAI	ACGGC	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	936
BclI	TGATCA	1 cut(s)	849
BfaI	CTAG	2 cut(s)	737, 1121
BfmI	CTRYAG	1 cut(s)	510
BfrI	CTTAAG	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	936
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
BmiI	GGNNCC	3 cut(s)	250, 693, 1239
BmsI	GCATC	6 cut(s)	14, 407, 467, 475, 1030, 1201
BpiI	GAAGAC	1 cut(s)	525
BpmI	CTGGAG	1 cut(s)	744
BpuEI	CTTGAG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	111, 252, 472
BsaWI	WCCGGW	1 cut(s)	1057
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 197
Bse118I	RCCGGY	1 cut(s)	1057
Bse1I	ACTGG	3 cut(s)	220, 603, 868
Bse3DI	GCAATG	2 cut(s)	606, 848
Bse8I	GATNNNNATC	1 cut(s)	73
BseDI	CCNNGG	3 cut(s)	111, 252, 472
BseGI	GGATG	5 cut(s)	422, 490, 607, 896, 1045
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	96, 197
BseMI	GCAATG	2 cut(s)	606, 848
BseMII	CTCAG	3 cut(s)	179, 237, 819
BseNI	ACTGG	3 cut(s)	220, 603, 868
BseXI	GCAGC	1 cut(s)	598
BshFI	GGCC	2 cut(s)	201, 378
BshNI	GGYRCC	1 cut(s)	1237
BshTI	ACCGGT	1 cut(s)	1057
BsiSI	CCGG	1 cut(s)	1058
BslFI	GGGAC	2 cut(s)	335, 856
BslI	CCNNNNNNNGG	2 cut(s)	96, 197
BsmFI	GGGAC	2 cut(s)	335, 856
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	2 cut(s)	201, 378
Bsp1407I	TGTACA	1 cut(s)	915
Bsp143I	GATC	2 cut(s)	739, 849
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	2 cut(s)	201, 378
BspCNI	CTCAG	3 cut(s)	178, 236, 818
BspLI	GGNNCC	3 cut(s)	250, 693, 1239
BspMAI	CTGCAG	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	1237
BspTI	CTTAAG	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	606, 848
BsrFI	RCCGGY	1 cut(s)	1057
BsrGI	TGTACA	1 cut(s)	915
BsrI	ACTGG	3 cut(s)	220, 603, 868
BssAI	RCCGGY	1 cut(s)	1057
BssECI	CCNNGG	3 cut(s)	111, 252, 472
BssMI	GATC	2 cut(s)	739, 849
BssNI	GRCGYC	1 cut(s)	324
BssT1I	CCWWGG	2 cut(s)	111, 472
Bst4CI	ACNGT	3 cut(s)	915, 1009, 1231
Bst6I	CTCTTC	1 cut(s)	755
BstACI	GRCGYC	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	392
BstAUI	TGTACA	1 cut(s)	915
BstC8I	GCNNGC	2 cut(s)	132, 1066
BstDEI	CTNAG	6 cut(s)	165, 223, 364, 765, 805, 814
BstDSI	CCRYGG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	1178
BstF5I	GGATG	5 cut(s)	422, 490, 607, 896, 1045
BstKTI	GATC	2 cut(s)	742, 852
BstMBI	GATC	2 cut(s)	739, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 239, 248
BstNSI	RCATGY	1 cut(s)	1192
BstPI	GGTNACC	1 cut(s)	1178
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	598
BstV2I	GAAGAC	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	936
BsuRI	GGCC	2 cut(s)	201, 378
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	5 cut(s)	422, 490, 607, 896, 1045
BtsIMutI	CAGTG	3 cut(s)	596, 813, 1005
Cac8I	GCNNGC	2 cut(s)	132, 1066
Cfr10I	RCCGGY	1 cut(s)	1057
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	916, 1128
CspAI	ACCGGT	1 cut(s)	1057
CviQI	GTAC	2 cut(s)	916, 1128
DdeI	CTNAG	6 cut(s)	165, 223, 364, 765, 805, 814
DpnI	GATC	2 cut(s)	741, 851
DpnII	GATC	2 cut(s)	739, 849
EaeI	YGGCCR	2 cut(s)	199, 376
Eam1104I	CTCTTC	1 cut(s)	755
EarI	CTCTTC	1 cut(s)	755
Eco130I	CCWWGG	2 cut(s)	111, 472
Eco32I	GATATC	3 cut(s)	433, 780, 1105
Eco57I	CTGAAG	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	1178
EcoO65I	GGTNACC	1 cut(s)	1178
EcoRV	GATATC	3 cut(s)	433, 780, 1105
EcoT14I	CCWWGG	2 cut(s)	111, 472
EcoT22I	ATGCAT	1 cut(s)	1194
ErhI	CCWWGG	2 cut(s)	111, 472
FalI	AAGNNNNNCTT	4 cut(s)	375, 407, 1378, 1410
FaqI	GGGAC	2 cut(s)	335, 856
FauNDI	CATATG	1 cut(s)	1243
FbaI	TGATCA	1 cut(s)	849
Fnu4HI	GCNGC	1 cut(s)	612
FokI	GGATG	5 cut(s)	429, 497, 614, 903, 1052
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	2 cut(s)	737, 1121
GluI	GCNGC	1 cut(s)	612
GsuI	CTGGAG	1 cut(s)	744
HaeIII	GGCC	2 cut(s)	201, 378
HapII	CCGG	1 cut(s)	1058
HgaI	GACGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	324
HincII	GTYRAC	2 cut(s)	988, 1215
HindII	GTYRAC	2 cut(s)	988, 1215
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	5 cut(s)	69, 221, 563, 1081, 1141
HpaI	GTTAAC	1 cut(s)	988
HpaII	CCGG	1 cut(s)	1058
HphI	GGTGA	2 cut(s)	230, 859
Hpy166II	GTNNAC	5 cut(s)	734, 988, 1012, 1215, 1296
Hpy188I	TCNGA	6 cut(s)	168, 313, 542, 1018, 1312, 1409
Hpy188III	TCNNGA	5 cut(s)	246, 407, 1100, 1108, 1261
Hpy8I	GTNNAC	5 cut(s)	734, 988, 1012, 1215, 1296
Hpy99I	CGWCG	1 cut(s)	1355
HpyAV	CCTTC	6 cut(s)	164, 335, 377, 488, 539, 1193
HpyCH4III	ACNGT	3 cut(s)	915, 1009, 1231
HpyCH4IV	ACGT	1 cut(s)	1353
HpyCH4V	TGCA	6 cut(s)	512, 841, 1068, 1154, 1192, 1364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 239, 248
HpyF3I	CTNAG	6 cut(s)	165, 223, 364, 765, 805, 814
HpySE526I	ACGT	1 cut(s)	1353
Hsp92I	GRCGYC	1 cut(s)	324
Ksp22I	TGATCA	1 cut(s)	849
KspAI	GTTAAC	1 cut(s)	988
Kzo9I	GATC	2 cut(s)	739, 849
LmnI	GCTCC	6 cut(s)	248, 455, 697, 763, 943, 1167
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	6 cut(s)	14, 407, 467, 475, 1030, 1201
MaeI	CTAG	2 cut(s)	737, 1121
MaeII	ACGT	1 cut(s)	1353
MaeIII	GTNAC	7 cut(s)	211, 218, 358, 622, 1021, 1147, 1178
MalI	GATC	2 cut(s)	741, 851
MboI	GATC	2 cut(s)	739, 849
MboII	GAAGA	8 cut(s)	10, 530, 648, 742, 814, 947, 954, 1309
MlsI	TGGCCA	1 cut(s)	378
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	2 cut(s)	215, 557
MmeI	TCCRAC	1 cut(s)	1400
MnlI	CCTC	6 cut(s)	151, 174, 337, 918, 1268, 1296
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	1194
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	9 cut(s)	236, 393, 441, 948, 987, 999, 1134, 1331, 1397
MslI	CAYNNNNRTG	2 cut(s)	675, 792
Msp20I	TGGCCA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	983
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	1 cut(s)	1058
Mva1269I	GAATGC	1 cut(s)	416
MwoI	GCNNNNNNNGC	3 cut(s)	127, 239, 248
NdeI	CATATG	1 cut(s)	1243
NdeII	GATC	2 cut(s)	739, 849
NlaIV	GGNNCC	3 cut(s)	250, 693, 1239
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	2 cut(s)	218, 1021
NsiI	ATGCAT	1 cut(s)	1194
NspI	RCATGY	1 cut(s)	1192
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	69, 1081, 1141
PflMI	CCANNNNNTGG	1 cut(s)	197
PinAI	ACCGGT	1 cut(s)	1057
PkrI	GCNGC	1 cut(s)	613
PleI	GAGTC	2 cut(s)	215, 557
PpsI	GAGTC	2 cut(s)	215, 557
PshBI	ATTAAT	1 cut(s)	999
PspEI	GGTNACC	1 cut(s)	1178
PspN4I	GGNNCC	3 cut(s)	250, 693, 1239
PstI	CTGCAG	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	983
RsaI	GTAC	2 cut(s)	917, 1129
RsaNI	GTAC	2 cut(s)	916, 1128
RseI	CAYNNNNRTG	2 cut(s)	675, 792
SaqAI	TTAA	9 cut(s)	236, 393, 441, 948, 987, 999, 1134, 1331, 1397
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	2 cut(s)	739, 849
SchI	GAGTC	2 cut(s)	215, 557
SfaNI	GCATC	6 cut(s)	14, 407, 467, 475, 1030, 1201
SfcI	CTRYAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	2 cut(s)	675, 792
SmlI	CTYRAG	2 cut(s)	101, 392
SmoI	CTYRAG	2 cut(s)	101, 392
SsiI	CCGC	1 cut(s)	414
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	2 cut(s)	737, 1121
StyI	CCWWGG	2 cut(s)	111, 472
TaaI	ACNGT	3 cut(s)	915, 1009, 1231
TaiI	ACGT	1 cut(s)	1356
TatI	WGTACW	1 cut(s)	915
TfiI	GAWTC	3 cut(s)	69, 1081, 1141
Tru1I	TTAA	9 cut(s)	236, 393, 441, 948, 987, 999, 1134, 1331, 1397
Tru9I	TTAA	9 cut(s)	236, 393, 441, 948, 987, 999, 1134, 1331, 1397
TscAI	CASTG	3 cut(s)	603, 813, 1012
TseFI	GTSAC	2 cut(s)	218, 1021
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	2 cut(s)	218, 1021
TspRI	CASTG	3 cut(s)	603, 813, 1012
Van91I	CCANNNNNTGG	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	392
VspI	ATTAAT	1 cut(s)	999
XapI	RAATTY	3 cut(s)	259, 665, 1249
XceI	RCATGY	1 cut(s)	1192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	937
XspI	CTAG	2 cut(s)	737, 1121
Zsp2I	ATGCAT	1 cut(s)	1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.