Prupe.1G200600_v2.0.a1

Vacuolar iron transporter homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
19666801 .. 19667211
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G200600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 351 bp
ATGGGCGTAGGGGCAGTCAAAAGAGACATCAAAGCCATCCTGCTTGCTGGATTCGCCGAATTAGTTGCTGGGGCATGCAGCGTGGCAATGGGAGAGTTTGTGGCTGTGTACACTCAACTTGACTCAGAGACGGCTCAAATTAAGAGAGAAAACAATAACATTATCAATGAAAAAGAAATTGCAAAAGCAAAAGAGAAGCTGCCGAGTCCATTTCAAGCCAGCGTGGCGTCTGCGTTTTCGTTTTTGGTGGATGGATTAGTCCCACTATTGGCAGCTGCGTTCATCACCAATTACAAGGGGCAGTTTCAGGCAAAACTTCTGCGGCAAGGTCTTGTTTCCAAACAACTCTAA

Protein Analysis

117

Amino Acids

12.4

Weight (kDa)

9.13

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 2 cut(s) 199, 275
AluI AGCT 2 cut(s) 199, 275
Alw26I GTCTC 2 cut(s) 18, 122
ApeKI GCWGC 4 cut(s) 78, 199, 272, 275
AsuHPI GGTGA 1 cut(s) 277
BbvI GCAGC 4 cut(s) 90, 186, 262, 284
BccI CCATC 2 cut(s) 44, 245
BceAI ACGGC 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BcoDI GTCTC 2 cut(s) 18, 122
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 5 cut(s) 79, 200, 273, 276, 323
BlsI GCNGC 5 cut(s) 80, 201, 274, 277, 324
BsaHI GRCGYC 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 2 cut(s) 36, 256
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 138
BseXI GCAGC 4 cut(s) 90, 186, 262, 284
BseYI CCCAGC 1 cut(s) 68
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 18, 122
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 245
Bsp1407I TGTACA 1 cut(s) 108
BspACI CCGC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 93
BsrGI TGTACA 1 cut(s) 108
BssNI GRCGYC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 45, 76, 220
BstDEI CTNAG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 36, 256
BstMAI GTCTC 2 cut(s) 18, 122
BstMWI GCNNNNNNNGC 2 cut(s) 53, 224
BstNSI RCATGY 1 cut(s) 78
BstV1I GCAGC 4 cut(s) 90, 186, 262, 284
BtsCI GGATG 2 cut(s) 36, 256
Cac8I GCNNGC 3 cut(s) 45, 76, 220
CseI GACGC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 109
CviAII CATG 1 cut(s) 75
CviJI RGCY 6 cut(s) 35, 104, 134, 199, 218, 275
CviKI_1 RGCY 6 cut(s) 35, 104, 134, 199, 218, 275
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 1 cut(s) 78
FaiI YATR 1 cut(s) 76
FaqI GGGAC 1 cut(s) 245
FatI CATG 1 cut(s) 74
Fnu4HI GCNGC 5 cut(s) 79, 200, 273, 276, 323
FokI GGATG 2 cut(s) 23, 263
Fsp4HI GCNGC 5 cut(s) 79, 200, 273, 276, 323
GluI GCNGC 5 cut(s) 79, 200, 273, 276, 323
GsaI CCCAGC 1 cut(s) 72
HgaI GACGC 1 cut(s) 216
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 1 cut(s) 78
HinfI GANTC 3 cut(s) 51, 122, 205
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 2 cut(s) 109, 111
Hpy188I TCNGA 1 cut(s) 127
Hpy8I GTNNAC 2 cut(s) 109, 111
HpyCH4V TGCA 2 cut(s) 78, 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 224
HpyF3I CTNAG 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 1 cut(s) 78
LpnPI CCDG 5 cut(s) 33, 53, 54, 232, 293
Lsp1109I GCAGC 4 cut(s) 90, 186, 262, 284
MluCI AATT 4 cut(s) 59, 138, 177, 289
MlyI GAGTC 2 cut(s) 116, 214
MseI TTAA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 53, 224
NlaIII CATG 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 228
NspI RCATGY 1 cut(s) 78
PaeI GCATGC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 5 cut(s) 80, 201, 274, 277, 324
PleI GAGTC 2 cut(s) 116, 213
PpsI GAGTC 2 cut(s) 116, 213
PspFI CCCAGC 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 5 cut(s) 79, 200, 273, 276, 323
SchI GAGTC 2 cut(s) 116, 214
SetI ASST 3 cut(s) 201, 277, 331
SphI GCATGC 1 cut(s) 78
Sse9I AATT 4 cut(s) 59, 138, 177, 289
SsiI CCGC 1 cut(s) 322
TasI AATT 4 cut(s) 59, 138, 177, 289
TatI WGTACW 1 cut(s) 108
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 4 cut(s) 78, 199, 272, 275
TspDTI ATGAA 2 cut(s) 183, 271
XceI RCATGY 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.