Prupe.1G203900_v2.0.a1

PHD finger-like domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
20347279 .. 20347895
617 bp
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UTR
Exon/CDS
Intron
Prupe.1G203900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 165 bp
ATGGTTAAGCATATTCCTGACCTAATTATGTGCCGGAAGCAACTCGGAATGGCCATCGGAAGGTTGTGTGAAAAGTGTGACGGCAATTGTGTAATCTGCGATTCTTTGGTGCGCCTTGCACACTTGTTTGGGAGTGTGACGATTAATTGGCAATTTCACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

55

Amino Acids

6.17

Weight (kDa)

8.77

Isoelectric Point (pI)

22.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 60
AoxI GGCC 1 cut(s) 51
AseI ATTAAT 1 cut(s) 144
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 149
BalI TGGCCA 1 cut(s) 53
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 60
BshFI GGCC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 60
BsnI GGCC 1 cut(s) 53
BspANI GGCC 1 cut(s) 53
BstHHI GCGC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 53
CfoI GCGC 1 cut(s) 114
CviJI RGCY 1 cut(s) 53
CviKI_1 RGCY 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 51
FaiI YATR 2 cut(s) 12, 29
GlaI GCGC 1 cut(s) 113
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 47, 59
Hpy188III TCNNGA 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 119
HspAI GCGC 1 cut(s) 112
LpnPI CCDG 2 cut(s) 30, 47
MaeIII GTNAC 2 cut(s) 77, 136
MfeI CAATTG 1 cut(s) 85
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 4 cut(s) 24, 85, 145, 152
MluNI TGGCCA 1 cut(s) 53
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
MseI TTAA 2 cut(s) 6, 144
Msp20I TGGCCA 1 cut(s) 53
MspI CCGG 1 cut(s) 34
MunI CAATTG 1 cut(s) 85
NmuCI GTSAC 2 cut(s) 77, 136
PfeI GAWTC 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 144
SaqAI TTAA 2 cut(s) 6, 144
SetI ASST 2 cut(s) 24, 65
SgeI CNNG 5 cut(s) 29, 46, 56, 128, 136
Sse9I AATT 4 cut(s) 24, 85, 145, 152
TasI AATT 4 cut(s) 24, 85, 145, 152
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 6, 144
Tru9I TTAA 2 cut(s) 6, 144
TseFI GTSAC 2 cut(s) 77, 136
Tsp45I GTSAC 2 cut(s) 77, 136
VspI ATTAAT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.