Prupe.1G226300_v2.0.a1

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
23942295 .. 23943318
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G226300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 471 bp
ATGACGACGTTGAATGTCTTAACAGCAAGACTTTCTACCATATGTTCCATGAGAACTGCAAAACCGTGCAGATCCTCATCCTTCGTTATGGGTCCTCGTTCGCATGGCTCTGTATCGAGGAGCAGTTATAAAGCATTAGGGCTGAAAGCTTCTTCCTCTTTCTGTGTATCAACAATGGCAGTTTACAAAGTGAAGCTGTTGGAGCCAAATGGTGAGGAGGCTAAGTTTGATGCCCCTGAAGATGCCCACATTCTGGACTCAGCTGAAAGCGCAGGGCTGAAGTTGCCTCACTTGTGCAGGTCAGGGGCATGCTCTACTTGTACTGGGCTTATGGTTTTGGGGTCGGTGGATCAATCGGAGGGAGTGTTCCTAGATGAGATGCAGATAGAGAAAGGGTACGTGGCCACCTGCGTCTCATACCCAACATCAGATTGTGTTATTCACACCCACAAAGAAAGCGATCTCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

157

Amino Acids

16.7

Weight (kDa)

6.57

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AarI CACCTGC 1 cut(s) 416
Acc36I ACCTGC 2 cut(s) 288, 416
AccB7I CCANNNNNTGG 1 cut(s) 253
AclWI GGATC 2 cut(s) 66, 357
AcoI YGGCCR 1 cut(s) 402
AcuI CTGAAG 2 cut(s) 258, 299
AfaI GTAC 2 cut(s) 322, 398
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 1 cut(s) 13
AloI GAACNNNNNNTCC 2 cut(s) 350, 382
AluBI AGCT 3 cut(s) 149, 196, 263
AluI AGCT 3 cut(s) 149, 196, 263
Alw26I GTCTC 1 cut(s) 418
AlwI GGATC 2 cut(s) 66, 357
AoxI GGCC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 92
BalI TGGCCA 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 418
BfaI CTAG 1 cut(s) 371
BfuAI ACCTGC 2 cut(s) 288, 416
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 93, 204
BmrI ACTGGG 1 cut(s) 333
BmsI GCATC 3 cut(s) 220, 232, 369
BmuI ACTGGG 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 76
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 350, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 328
Bse8I GATNNNNATC 1 cut(s) 76
BseGI GGATG 1 cut(s) 77
BseJI GATNNNNATC 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 2 cut(s) 133, 230
BsgI GTGCAG 2 cut(s) 88, 316
BshFI GGCC 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 418
BsmBI CGTCTC 1 cut(s) 418
BsnI GGCC 1 cut(s) 404
Bsp143I GATC 3 cut(s) 71, 349, 460
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 1 cut(s) 272
BspLI GGNNCC 2 cut(s) 93, 204
BspMI ACCTGC 2 cut(s) 288, 416
BspPI GGATC 2 cut(s) 66, 357
BsrI ACTGG 1 cut(s) 328
BssMI GATC 3 cut(s) 71, 349, 460
Bst4CI ACNGT 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 222, 259
BstF5I GGATG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 3 cut(s) 74, 352, 463
BstMAI GTCTC 1 cut(s) 418
BstMBI GATC 3 cut(s) 71, 349, 460
BstMWI GCNNNNNNNGC 3 cut(s) 202, 269, 283
BstNSI RCATGY 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 1 cut(s) 404
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 466
BveI ACCTGC 2 cut(s) 288, 416
Cac8I GCNNGC 1 cut(s) 310
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 92
CseI GACGC 1 cut(s) 400
Csp6I GTAC 2 cut(s) 321, 397
CviAII CATG 3 cut(s) 49, 104, 309
CviQI GTAC 2 cut(s) 321, 397
DdeI CTNAG 2 cut(s) 222, 259
DpnI GATC 3 cut(s) 73, 351, 462
DpnII GATC 3 cut(s) 71, 349, 460
EaeI YGGCCR 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 258, 299
EcoO109I RGGNCCY 1 cut(s) 92
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 3 cut(s) 52, 107, 312
FaiI YATR 9 cut(s) 41, 43, 50, 89, 105, 129, 310, 332, 418
FatI CATG 3 cut(s) 48, 103, 308
FauNDI CATATG 1 cut(s) 41
FokI GGATG 1 cut(s) 64
FspBI CTAG 1 cut(s) 371
GlaI GCGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 404
HgaI GACGC 1 cut(s) 400
HhaI GCGC 1 cut(s) 272
Hin1II CATG 3 cut(s) 52, 107, 312
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 1 cut(s) 257
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 358, 430
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 2 cut(s) 8, 399
HpyCH4V TGCA 4 cut(s) 59, 69, 297, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 269, 283
HpyF3I CTNAG 2 cut(s) 222, 259
HpySE526I ACGT 2 cut(s) 8, 399
Hsp92II CATG 3 cut(s) 52, 107, 312
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 3 cut(s) 71, 349, 460
LmnI GCTCC 2 cut(s) 120, 202
LpnPI CCDG 7 cut(s) 239, 249, 258, 283, 288, 309, 421
LweI GCATC 3 cut(s) 220, 232, 369
MaeI CTAG 1 cut(s) 371
MaeII ACGT 2 cut(s) 8, 399
MalI GATC 3 cut(s) 73, 351, 462
MboI GATC 3 cut(s) 71, 349, 460
MboII GAAGA 2 cut(s) 144, 251
MflI RGATCY 1 cut(s) 71
MlsI TGGCCA 1 cut(s) 404
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 8 cut(s) 85, 105, 111, 166, 208, 211, 297, 352
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 263
MwoI GCNNNNNNNGC 3 cut(s) 202, 269, 283
NdeI CATATG 1 cut(s) 41
NdeII GATC 3 cut(s) 71, 349, 460
NlaIII CATG 3 cut(s) 52, 107, 312
NlaIV GGNNCC 2 cut(s) 93, 204
NspI RCATGY 1 cut(s) 312
PaeI GCATGC 1 cut(s) 312
PaqCI CACCTGC 1 cut(s) 416
PflMI CCANNNNNTGG 1 cut(s) 253
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 92
PsiI TTATAA 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 93, 204
PspPI GGNCC 1 cut(s) 92
PspPPI RGGWCCY 1 cut(s) 92
PsuI RGATCY 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 322, 398
RsaNI GTAC 2 cut(s) 321, 397
SaqAI TTAA 1 cut(s) 20
Sau3AI GATC 3 cut(s) 71, 349, 460
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 1 cut(s) 251
SetI ASST 7 cut(s) 11, 151, 198, 265, 302, 402, 410
SfaNI GCATC 3 cut(s) 220, 232, 369
SinI GGWCC 1 cut(s) 92
SphI GCATGC 1 cut(s) 312
SspMI CTAG 1 cut(s) 371
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 2 cut(s) 11, 402
TaqI TCGA 1 cut(s) 116
TatI WGTACW 1 cut(s) 320
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 92
XceI RCATGY 1 cut(s) 312
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.