Prupe.1G237900_v2.0.a1

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0022482
Physical Location & Seq
Forward (+)
25267460 .. 25268926
1467 bp
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UTR
Exon/CDS
Intron
Prupe.1G237900.1_v2.0.a1.CDS.5

Sequence Viewer

Length: 516 bp
ATGGACCAACACAAGACCGACGACAATCTCCGTTACATAGGTGGCCTCACACGTGTTCTCGTTGTTGATGCCTCCATTTCCTTTGCAGAGCTAATGGTTAAGCTCACGGAGTTATGTGGCTACTCTGTAGAGTTGAGGTGTCAATTGCCAGACGAAGGTGTTCAGAACGCCGACGCTGGTGATCTCTTGTTCGCAAACGCCGACGACGATGATTTTTCCATAGCCAAAGGGGCTGCCGCTTCCTCTTCCTCTCTGCGGCGGCCATTGAAGAAGCTCTTCTTTGAAGAGCGGGATACGCCGAACTCGGCAAAGTCGTTTTACAACTCAGAAGATGGACTCAGAAGGAAGGATGCACGCTCTGTCAAAATCAAGAGGAGCAAAGATGCTGTCAAGTTTAAGGTTCGATGCTCCAAGTACCTTTACACTCTTTGCGTGTTTGATTCGGAGAAGGCCGACAAGTTGAAGCAATCCCTTCCTCCAGGTTTAAGCGTCAGGACCTGTGAAGAAGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

172

Amino Acids

19.14

Weight (kDa)

6.61

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022482)

Species Orthologous Gene IDs
prunus_persica Prupe.1G237900_v2.0.a1 Prupe.1G366600_v2.0.a1 Prupe.4G232200_v2.0.a1 Prupe.7G019300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 289
AciI CCGC 4 cut(s) 237, 256, 259, 289
AcoI YGGCCR 1 cut(s) 260
AcvI CACGTG 1 cut(s) 53
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 2 cut(s) 155, 255
AflIII ACRYGT 2 cut(s) 50, 52
AgsI TTSAA 3 cut(s) 268, 284, 463
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 3 cut(s) 91, 103, 274
AluI AGCT 3 cut(s) 91, 103, 274
AlwNI CAGNNNCTG 1 cut(s) 498
AoxI GGCC 3 cut(s) 43, 260, 450
ApeKI GCWGC 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 372, 404
Asp700I GAANNNNTTC 2 cut(s) 159, 275
AspS9I GGNCC 2 cut(s) 4, 495
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 2 cut(s) 4, 495
BbrPI CACGTG 1 cut(s) 53
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 480
BciVI GTATCC 1 cut(s) 286
BfmI CTRYAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 286
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 4 cut(s) 234, 237, 257, 260
BlsI GCNGC 4 cut(s) 235, 238, 258, 261
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 2 cut(s) 4, 495
BmgT120I GGNCC 2 cut(s) 4, 495
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 4 cut(s) 58, 340, 373, 395
BpmI CTGGAG 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 53
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 255
BseBI CCWGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 2 cut(s) 155, 255
BseMII CTCAG 2 cut(s) 339, 352
BseRI GAGGAG 1 cut(s) 388
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 3 cut(s) 45, 262, 452
BslI CCNNNNNNNGG 2 cut(s) 155, 255
BsnI GGCC 3 cut(s) 45, 262, 452
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 4 cut(s) 237, 256, 259, 289
BspANI GGCC 3 cut(s) 45, 262, 452
BspCNI CTCAG 2 cut(s) 338, 351
BspQI GCTCTTC 2 cut(s) 279, 281
BsrBI CCGCTC 1 cut(s) 289
BssMI GATC 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 480
Bst6I CTCTTC 4 cut(s) 250, 279, 281, 501
BstBAI YACGTR 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 325, 338
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 230, 295
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 478
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 220
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 3 cut(s) 45, 262, 452
BtsCI GGATG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 355
CaiI CAGNNNCTG 1 cut(s) 498
Cfr13I GGNCC 2 cut(s) 4, 495
CseI GACGC 2 cut(s) 182, 478
Csp6I GTAC 1 cut(s) 415
CviJI RGCY 9 cut(s) 45, 91, 103, 120, 224, 233, 262, 274, 452
CviKI_1 RGCY 9 cut(s) 45, 91, 103, 120, 224, 233, 262, 274, 452
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 325, 338
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 4 cut(s) 250, 279, 281, 501
EarI CTCTTC 4 cut(s) 250, 279, 281, 501
Eco47I GGWCC 2 cut(s) 4, 495
Eco72I CACGTG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 478
FaiI YATR 3 cut(s) 38, 115, 221
FalI AAGNNNNNCTT 4 cut(s) 260, 292, 263, 295
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 4 cut(s) 234, 237, 257, 260
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 4 cut(s) 234, 237, 257, 260
GluI GCNGC 4 cut(s) 234, 237, 257, 260
GsuI CTGGAG 1 cut(s) 462
HaeIII GGCC 3 cut(s) 45, 262, 452
HgaI GACGC 2 cut(s) 182, 478
HinfI GANTC 2 cut(s) 336, 440
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 4 cut(s) 165, 328, 341, 445
Hpy188III TCNNGA 2 cut(s) 370, 493
Hpy99I CGWCG 4 cut(s) 23, 176, 206, 209
HpyAV CCTTC 5 cut(s) 149, 336, 340, 442, 482
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 86, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 295
HpyF3I CTNAG 2 cut(s) 325, 338
HpySE526I ACGT 1 cut(s) 52
Kzo9I GATC 1 cut(s) 181
LguI GCTCTTC 2 cut(s) 279, 281
LmnI GCTCC 2 cut(s) 375, 413
LpnPI CCDG 6 cut(s) 162, 162, 465, 478, 492, 511
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 4 cut(s) 58, 340, 373, 395
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 32
MalI GATC 1 cut(s) 183
MbiI CCGCTC 1 cut(s) 289
MboI GATC 1 cut(s) 181
MboII GAAGA 6 cut(s) 237, 268, 280, 296, 341, 515
MfeI CAATTG 1 cut(s) 143
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 330
MnlI CCTC 7 cut(s) 56, 82, 129, 253, 259, 366, 486
MroXI GAANNNNTTC 2 cut(s) 159, 275
MseI TTAA 3 cut(s) 99, 396, 485
MspR9I CCNGG 1 cut(s) 480
MunI CAATTG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 2 cut(s) 230, 295
NdeII GATC 1 cut(s) 181
NmeAIII GCCGAG 1 cut(s) 284
PciSI GCTCTTC 2 cut(s) 279, 281
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 204, 311
PdmI GAANNNNTTC 2 cut(s) 159, 275
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 4 cut(s) 235, 238, 258, 261
PleI GAGTC 1 cut(s) 330
PmaCI CACGTG 1 cut(s) 53
PmlI CACGTG 1 cut(s) 53
PpsI GAGTC 1 cut(s) 330
Ppu21I YACGTR 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 478
PspCI CACGTG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 478
PspPI GGNCC 2 cut(s) 4, 495
PspPPI RGGWCCY 1 cut(s) 495
PstNI CAGNNNCTG 1 cut(s) 498
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SapI GCTCTTC 2 cut(s) 279, 281
SaqAI TTAA 3 cut(s) 99, 396, 485
SatI GCNGC 4 cut(s) 234, 237, 257, 260
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 2 cut(s) 4, 495
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 480
SfaNI GCATC 4 cut(s) 58, 340, 373, 395
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 2 cut(s) 4, 495
Sse9I AATT 1 cut(s) 143
SsiI CCGC 4 cut(s) 237, 256, 259, 289
StyD4I CCNGG 1 cut(s) 478
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 403
TaqII GACCGA 1 cut(s) 32
TasI AATT 1 cut(s) 143
TauI GCSGC 3 cut(s) 239, 259, 262
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 3 cut(s) 99, 396, 485
Tru9I TTAA 3 cut(s) 99, 396, 485
TseI GCWGC 1 cut(s) 233
TspGWI ACGGA 2 cut(s) 20, 122
VpaK11BI GGWCC 2 cut(s) 4, 495
XmnI GAANNNNTTC 2 cut(s) 159, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.