Prupe.1G241100_v2.0.a1

Multidrug Resistance

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
25519446 .. 25521673
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G241100.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 975 bp
ATGGCGAAGAAAGGTGGAATTTTCAGGTATGCAGATGGTGTGGACAAGTTATTATTGGTTTTGGGGACTCTGGGTAGCACTGGAGATGGGTTGATGACACCGTTGATGATGCTGGTCCTCAGCCGTGTGATCAACGAATACGGAGGCGGATTTGCAGAAGGAATTTGTTGGACCGGAACTGCTGAGAGACAGGCATCTCGCATGAGAATGGAATACTTCAAATCAGTCCTCAGGCAAGAAGTTGCCTTCTTTGACAAACAAGCTAATTCTTCCATGATCTTCAAAGTCATTTCTACTATCTCTTCTGATGCCCATTTAATCCATGACACAATAACCGAGAAGCAAGGTTTCTCAAAGGGATTACTGATAGGGAGCATGGGAAGGATTTATGCTGCTTGGGCTTTTCAGGCTTGGGTTGGTTGCAAACTTGTTACTGGGGAAGGAGAAAAAGCATATGTGAAAGGAGATATCAAATTTAGAGATGTTGATTTCTGCTACCCATCGAGATCGGATAGCCCAGTTCTTCAAGGACTCAATCTTAAAGTCCAAGCTGAACTTTCAACTGCAATGGTTGAGATCCCAGACGGACTGGTCAATCAAGAGCTAATTCTCTTTGCAACATCCATAAAAGAGAATATCTTATTCGGAAAGGAAGGAGCTCCAATGGAACACCTATTAAGTGCATCTAAGGTTGGGCAATTTGGAGTCCAATTGTCTGAAGGACAAAAGCAAAGGATTTCCATAGCAAGAGCAATAATCAGAAACCCGGAAATTCTTTTGCTTGATGAAGCCACTAGTGCTTTGGATGCTCAATCTGAAAAAATGGTACAAGAAGCCTTAAACCAAGCTTCACAAGGAAGAACAACTATTGTCATAGCTCACCGCCTCACCACTATTTGCGAGGCTGATTTGATAGCTGTTCTTCAATCAGGGAGAGTGATTGAAATAAGATCTCACGATGAGTTGGTCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

325

Amino Acids

35.47

Weight (kDa)

6.02

Isoelectric Point (pI)

30.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 590
AciI CCGC 2 cut(s) 147, 883
AclWI GGATC 1 cut(s) 571
AcsI RAATTY 4 cut(s) 18, 162, 473, 771
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 1 cut(s) 828
AgsI TTSAA 6 cut(s) 220, 283, 527, 561, 926, 944
AhlI ACTAGT 1 cut(s) 794
AluBI AGCT 7 cut(s) 263, 551, 604, 659, 848, 878, 917
AluI AGCT 7 cut(s) 263, 551, 604, 659, 848, 878, 917
Alw21I GWGCWC 1 cut(s) 661
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 571
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 4 cut(s) 18, 162, 473, 771
AspS9I GGNCC 3 cut(s) 115, 171, 967
AsuC2I CCSGG 1 cut(s) 767
AsuHPI GGTGA 2 cut(s) 872, 880
AvaII GGWCC 3 cut(s) 115, 171, 967
AxyI CCTNAGG 1 cut(s) 230
BanII GRGCYC 1 cut(s) 661
Bbv12I GWGCWC 1 cut(s) 661
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 379
BccI CCATC 3 cut(s) 29, 80, 508
BceAI ACGGC 1 cut(s) 108
BclI TGATCA 1 cut(s) 129
BcnI CCSGG 1 cut(s) 767
BcoDI GTCTC 1 cut(s) 181
BcuI ACTAGT 1 cut(s) 794
BfaI CTAG 1 cut(s) 795
BglII AGATCT 1 cut(s) 950
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 767
Bme18I GGWCC 3 cut(s) 115, 171, 967
BmgT120I GGNCC 3 cut(s) 115, 171, 967
BmrFI CCNGG 1 cut(s) 767
BmrI ACTGGG 2 cut(s) 444, 512
BmsI GCATC 5 cut(s) 99, 203, 298, 692, 796
BmuI ACTGGG 2 cut(s) 444, 512
BpmI CTGGAG 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 767
BsaWI WCCGGW 1 cut(s) 173
Bse1I ACTGG 4 cut(s) 85, 439, 518, 594
Bse21I CCTNAGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 573
BseGI GGATG 2 cut(s) 620, 811
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 3 cut(s) 133, 174, 244
BseNI ACTGG 4 cut(s) 85, 439, 518, 594
BseXI GCAGC 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 661
BsiSI CCGG 2 cut(s) 174, 767
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 5 cut(s) 129, 276, 506, 576, 950
BspACI CCGC 2 cut(s) 147, 883
BspCNI CTCAG 3 cut(s) 132, 175, 243
BspPI GGATC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 573
BsrI ACTGG 4 cut(s) 85, 439, 518, 594
BssMI GATC 5 cut(s) 129, 276, 506, 576, 950
Bst4CI ACNGT 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 307
BstDEI CTNAG 4 cut(s) 119, 183, 230, 687
BstF5I GGATG 2 cut(s) 620, 811
BstKTI GATC 5 cut(s) 132, 279, 509, 579, 953
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 5 cut(s) 129, 276, 506, 576, 950
BstMWI GCNNNNNNNGC 4 cut(s) 398, 407, 797, 806
BstSCI CCNGG 1 cut(s) 765
BstV1I GCAGC 1 cut(s) 379
BstX2I RGATCY 2 cut(s) 576, 950
BstYI RGATCY 2 cut(s) 576, 950
Bsu36I CCTNAGG 1 cut(s) 230
BtsCI GGATG 2 cut(s) 620, 811
BtsIMutI CAGTG 1 cut(s) 78
Cfr13I GGNCC 3 cut(s) 115, 171, 967
Csp6I GTAC 1 cut(s) 827
CviAII CATG 4 cut(s) 202, 274, 323, 376
CviQI GTAC 1 cut(s) 827
DdeI CTNAG 4 cut(s) 119, 183, 230, 687
DpnI GATC 5 cut(s) 131, 278, 508, 578, 952
DpnII GATC 5 cut(s) 129, 276, 506, 576, 950
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
EciI GGCGGA 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 659
Eco24I GRGCYC 1 cut(s) 661
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 3 cut(s) 115, 171, 967
Eco53kI GAGCTC 1 cut(s) 659
Eco57I CTGAAG 1 cut(s) 738
Eco81I CCTNAGG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 659
EcoRV GATATC 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 661
FaeI CATG 4 cut(s) 205, 277, 326, 379
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 1 cut(s) 79
FatI CATG 4 cut(s) 201, 273, 322, 375
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 2 cut(s) 607, 818
FriOI GRGCYC 1 cut(s) 661
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 1 cut(s) 795
GluI GCNGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 102
HapII CCGG 2 cut(s) 174, 767
Hin1II CATG 4 cut(s) 205, 277, 326, 379
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 3 cut(s) 67, 531, 705
HpaII CCGG 2 cut(s) 174, 767
HphI GGTGA 2 cut(s) 872, 880
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 6 cut(s) 307, 511, 647, 718, 761, 817
Hpy188III TCNNGA 3 cut(s) 504, 599, 956
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 6 cut(s) 152, 256, 375, 434, 647, 713
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4V TGCA 6 cut(s) 32, 155, 423, 566, 617, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 398, 407, 797, 806
HpyF3I CTNAG 4 cut(s) 119, 183, 230, 687
Hsp92II CATG 4 cut(s) 205, 277, 326, 379
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 5 cut(s) 129, 276, 506, 576, 950
LmnI GCTCC 3 cut(s) 372, 656, 664
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 5 cut(s) 99, 203, 298, 692, 796
MaeI CTAG 1 cut(s) 795
MaeIII GTNAC 1 cut(s) 430
MalI GATC 5 cut(s) 131, 278, 508, 578, 952
MboI GATC 5 cut(s) 129, 276, 506, 576, 950
MboII GAAGA 7 cut(s) 19, 261, 271, 294, 515, 870, 914
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 2 cut(s) 576, 950
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 8 cut(s) 18, 162, 265, 473, 606, 698, 710, 771
MlyI GAGTC 3 cut(s) 61, 525, 714
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 5 cut(s) 128, 137, 239, 895, 896
MseI TTAA 4 cut(s) 317, 540, 677, 839
MslI CAYNNNNRTG 1 cut(s) 206
MspI CCGG 2 cut(s) 174, 767
MspR9I CCNGG 1 cut(s) 767
MunI CAATTG 1 cut(s) 710
MwoI GCNNNNNNNGC 4 cut(s) 398, 407, 797, 806
NciI CCSGG 1 cut(s) 767
NdeI CATATG 1 cut(s) 454
NdeII GATC 5 cut(s) 129, 276, 506, 576, 950
NlaIII CATG 4 cut(s) 205, 277, 326, 379
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 3 cut(s) 61, 525, 713
PpsI GAGTC 3 cut(s) 61, 525, 713
Psp124BI GAGCTC 1 cut(s) 661
PspPI GGNCC 3 cut(s) 115, 171, 967
PsuI RGATCY 2 cut(s) 576, 950
RsaI GTAC 1 cut(s) 828
RsaNI GTAC 1 cut(s) 827
RseI CAYNNNNRTG 1 cut(s) 206
SacI GAGCTC 1 cut(s) 661
SaqAI TTAA 4 cut(s) 317, 540, 677, 839
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 5 cut(s) 129, 276, 506, 576, 950
Sau96I GGNCC 3 cut(s) 115, 171, 967
SchI GAGTC 3 cut(s) 61, 525, 714
ScrFI CCNGG 1 cut(s) 767
SduI GDGCHC 1 cut(s) 661
SfaNI GCATC 5 cut(s) 99, 203, 298, 692, 796
SinI GGWCC 3 cut(s) 115, 171, 967
SmiMI CAYNNNNRTG 1 cut(s) 206
SpeI ACTAGT 1 cut(s) 794
Sse9I AATT 8 cut(s) 18, 162, 265, 473, 606, 698, 710, 771
SsiI CCGC 2 cut(s) 147, 883
SspMI CTAG 1 cut(s) 795
SstI GAGCTC 1 cut(s) 661
StyD4I CCNGG 1 cut(s) 765
TaaI ACNGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 503
TasI AATT 8 cut(s) 18, 162, 265, 473, 606, 698, 710, 771
Tru1I TTAA 4 cut(s) 317, 540, 677, 839
Tru9I TTAA 4 cut(s) 317, 540, 677, 839
TscAI CASTG 1 cut(s) 85
TseI GCWGC 1 cut(s) 392
TspDTI ATGAA 1 cut(s) 801
TspGWI ACGGA 2 cut(s) 156, 600
TspRI CASTG 1 cut(s) 85
VpaK11BI GGWCC 3 cut(s) 115, 171, 967
XapI RAATTY 4 cut(s) 18, 162, 473, 771
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
XspI CTAG 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.