Prupe.1G277700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
28223884 .. 28224831
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G277700.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 795 bp
ATGGCAGGCCAAACTGTGAAGCTCTTCACAGTGCTTAAGAGATCTGCGAGCATAATGCGGTCCCCCACGTCCCACTTCTTACACCTCTCCGCCCTGCTTCTTCCCCTGGGTGTCCTCTTGTCCACCGTCGTCTACCCTTTTCTGCTTGATTCCGTCACCGACCCATTCTCCCCCGGCGACCGGGCTCCTACTTCTGCACCTCAACTAAACCAACCGACCATCGCCTCCACACTCATTCTTATCTTTACACCTATCGCCTTCACGGTCTTCGCCTTGATCTCCTCTGTCTGCGCAGTCGGGTCGATCACCCACACCATATTTCATGGGTTCCACGGCCGACCCGTGAAGCTAAGGTCGGCGATCGAATCGGGTTTCGGGTCTTTTTTATTTCTGCTGGCTACGGCTGTGATTTTGCAGCTGGTTGTGAAATGGTTTGGGATACTGCTGTTTATGGGGGGTCGAGTGGTCGAGCTGCAGAGCGGGCGGAGGATGGAGGACTGGTCGCCTGAGTTGACTTTCGCCTTCTACGGGGTGGCTGCAACGGTTGTGTTGCCGGTGGCTCTTGGGGTTTTGGGGATTTTGGGTTGGAGATTGGTAAGGGCGTGGGCGGCGCTAACCAGTGGGTGGCAGAATGGGGCGCTGTGTCTGCTACATGGCATTGCCCTCATCAGTGTTTTGCAGATGATGGTCATCTTTTTCTATACAGTGGCAATCACTGTATTGTATTGCGAGGCCAAGGAAGACGACGGTGGCGAGGAGGTTGATCTTGGTGATGACTGTTGCAAGTTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

28.56

Weight (kDa)

6.58

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 292
AccB7I CCANNNNNTGG 1 cut(s) 624
AccBSI CCGCTC 1 cut(s) 480
AccI GTMKAC 1 cut(s) 132
AciI CCGC 5 cut(s) 58, 90, 480, 484, 608
AcoI YGGCCR 1 cut(s) 334
AfiI CCNNNNNNNGG 3 cut(s) 180, 528, 624
AflII CTTAAG 1 cut(s) 35
AjiI CACGTC 1 cut(s) 69
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 4 cut(s) 22, 349, 418, 472
AluI AGCT 4 cut(s) 22, 349, 418, 472
AoxI GGCC 3 cut(s) 7, 334, 732
ApeKI GCWGC 3 cut(s) 415, 472, 536
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 3 cut(s) 293, 613, 640
AspS9I GGNCC 1 cut(s) 60
AsuC2I CCSGG 2 cut(s) 174, 182
AsuHPI GGTGA 3 cut(s) 148, 298, 782
AvaII GGWCC 1 cut(s) 60
BaeI ACNNNNGTAYC 2 cut(s) 431, 464
BanII GRGCYC 1 cut(s) 187
BbsI GAAGAC 2 cut(s) 259, 747
BbvI GCAGC 3 cut(s) 427, 459, 523
BccI CCATC 3 cut(s) 227, 484, 679
BceAI ACGGC 2 cut(s) 349, 417
BcgI CGANNNNNNTGC 4 cut(s) 37, 71, 282, 316
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 1 cut(s) 432
BcnI CCSGG 2 cut(s) 174, 182
BfmI CTRYAG 1 cut(s) 473
BfoI RGCGCY 2 cut(s) 614, 641
BfrI CTTAAG 1 cut(s) 35
BfuI GTATCC 1 cut(s) 432
BglII AGATCT 1 cut(s) 41
BisI GCNGC 4 cut(s) 416, 473, 537, 609
BlsI GCNGC 4 cut(s) 417, 474, 538, 610
Bme1390I CCNGG 3 cut(s) 107, 174, 182
Bme18I GGWCC 1 cut(s) 60
BmgBI CACGTC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 3 cut(s) 62, 186, 329
BmrFI CCNGG 3 cut(s) 107, 174, 182
BpiI GAAGAC 2 cut(s) 259, 747
Bpu10I CCTNAGC 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 174, 182
BsaBI GATNNNNATC 1 cut(s) 689
BsaJI CCNNGG 5 cut(s) 105, 106, 172, 331, 735
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 485, 515
Bsc4I CCNNNNNNNGG 3 cut(s) 180, 528, 624
Bse118I RCCGGY 1 cut(s) 553
Bse1I ACTGG 2 cut(s) 503, 618
Bse3DI GCAATG 1 cut(s) 657
Bse8I GATNNNNATC 1 cut(s) 689
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 5 cut(s) 105, 106, 172, 331, 735
BseGI GGATG 1 cut(s) 495
BseJI GATNNNNATC 1 cut(s) 689
BseLI CCNNNNNNNGG 3 cut(s) 180, 528, 624
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 2 cut(s) 503, 618
BseRI GAGGAG 2 cut(s) 271, 770
BseX3I CGGCCG 1 cut(s) 334
BseXI GCAGC 3 cut(s) 427, 459, 523
BsgI GTGCAG 1 cut(s) 180
Bsh1285I CGRYCG 3 cut(s) 181, 337, 363
BshFI GGCC 3 cut(s) 9, 336, 734
BsiEI CGRYCG 3 cut(s) 181, 337, 363
BsiSI CCGG 3 cut(s) 174, 181, 554
BslFI GGGAC 2 cut(s) 46, 55
BslI CCNNNNNNNGG 3 cut(s) 180, 528, 624
BsmFI GGGAC 2 cut(s) 46, 55
BsnI GGCC 3 cut(s) 9, 336, 734
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 5 cut(s) 41, 276, 303, 360, 763
BspACI CCGC 5 cut(s) 58, 90, 480, 484, 608
BspANI GGCC 3 cut(s) 9, 336, 734
BspCNI CTCAG 1 cut(s) 499
BspLI GGNNCC 3 cut(s) 62, 186, 329
BspMAI CTGCAG 1 cut(s) 477
BspQI GCTCTTC 1 cut(s) 29
BspTI CTTAAG 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 480
BsrDI GCAATG 1 cut(s) 657
BsrFI RCCGGY 1 cut(s) 553
BsrI ACTGG 2 cut(s) 503, 618
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 5 cut(s) 105, 106, 172, 331, 735
BssMI GATC 5 cut(s) 41, 276, 303, 360, 763
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 9 cut(s) 16, 31, 127, 265, 544, 706, 718, 749, 779
Bst6I CTCTTC 1 cut(s) 29
BstAFI CTTAAG 1 cut(s) 35
BstC8I GCNNGC 4 cut(s) 7, 49, 396, 482
BstDEI CTNAG 2 cut(s) 350, 507
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 1 cut(s) 495
BstH2I RGCGCY 2 cut(s) 614, 641
BstHHI GCGC 3 cut(s) 293, 613, 640
BstKTI GATC 5 cut(s) 44, 279, 306, 363, 766
BstMBI GATC 5 cut(s) 41, 276, 303, 360, 763
BstMCI CGRYCG 3 cut(s) 181, 337, 363
BstMWI GCNNNNNNNGC 3 cut(s) 481, 608, 646
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 105, 172, 180
BstSFI CTRYAG 1 cut(s) 473
BstV1I GCAGC 3 cut(s) 427, 459, 523
BstV2I GAAGAC 2 cut(s) 259, 747
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BstZI CGGCCG 1 cut(s) 334
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 3 cut(s) 9, 336, 734
BtgI CCRYGG 1 cut(s) 331
BtgZI GCGATG 1 cut(s) 205
BtrI CACGTC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 495
BtsIMutI CAGTG 5 cut(s) 36, 625, 676, 711, 714
Cac8I GCNNGC 4 cut(s) 7, 49, 396, 482
CfoI GCGC 3 cut(s) 293, 613, 640
Cfr10I RCCGGY 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 60
CviAII CATG 2 cut(s) 323, 653
DdeI CTNAG 2 cut(s) 350, 507
DpnI GATC 5 cut(s) 43, 278, 305, 362, 765
DpnII GATC 5 cut(s) 41, 276, 303, 360, 763
EaeI YGGCCR 1 cut(s) 334
EagI CGGCCG 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 2 cut(s) 79, 499
EclXI CGGCCG 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 735
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 60
Eco52I CGGCCG 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 2 cut(s) 326, 656
FaiI YATR 6 cut(s) 53, 317, 324, 452, 654, 702
FaqI GGGAC 2 cut(s) 46, 55
FatI CATG 2 cut(s) 322, 652
FauI CCCGC 1 cut(s) 473
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 416, 473, 537, 609
FokI GGATG 1 cut(s) 502
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 4 cut(s) 416, 473, 537, 609
FspI TGCGCA 1 cut(s) 292
GlaI GCGC 3 cut(s) 292, 612, 639
GluI GCNGC 4 cut(s) 416, 473, 537, 609
HaeII RGCGCY 2 cut(s) 614, 641
HaeIII GGCC 3 cut(s) 9, 336, 734
HapII CCGG 3 cut(s) 174, 181, 554
HhaI GCGC 3 cut(s) 293, 613, 640
Hin1II CATG 2 cut(s) 326, 656
Hin6I GCGC 3 cut(s) 291, 611, 638
HinP1I GCGC 3 cut(s) 291, 611, 638
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HinfI GANTC 2 cut(s) 149, 365
HpaII CCGG 3 cut(s) 174, 181, 554
HphI GGTGA 3 cut(s) 148, 298, 782
Hpy166II GTNNAC 3 cut(s) 123, 133, 513
Hpy8I GTNNAC 3 cut(s) 123, 133, 513
Hpy99I CGWCG 2 cut(s) 131, 749
HpyAV CCTTC 2 cut(s) 268, 532
HpyCH4III ACNGT 9 cut(s) 16, 31, 127, 265, 544, 706, 718, 749, 779
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 6 cut(s) 197, 415, 475, 539, 679, 783
HpyF10VI GCNNNNNNNGC 3 cut(s) 481, 608, 646
HpyF3I CTNAG 2 cut(s) 350, 507
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 2 cut(s) 326, 656
HspAI GCGC 3 cut(s) 291, 611, 638
Kzo9I GATC 5 cut(s) 41, 276, 303, 360, 763
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 1 cut(s) 190
Lsp1109I GCAGC 3 cut(s) 427, 459, 523
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 154
MalI GATC 5 cut(s) 43, 278, 305, 362, 765
MbiI CCGCTC 1 cut(s) 480
MboI GATC 5 cut(s) 41, 276, 303, 360, 763
MboII GAAGA 4 cut(s) 16, 92, 259, 752
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 566
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 418
MspCI CTTAAG 1 cut(s) 35
MspI CCGG 3 cut(s) 174, 181, 554
MspR9I CCNGG 3 cut(s) 107, 174, 182
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 3 cut(s) 481, 608, 646
NciI CCSGG 2 cut(s) 174, 182
NdeII GATC 5 cut(s) 41, 276, 303, 360, 763
NlaIII CATG 2 cut(s) 326, 656
NlaIV GGNNCC 3 cut(s) 62, 186, 329
NmuCI GTSAC 1 cut(s) 154
NsbI TGCGCA 1 cut(s) 292
PasI CCCWGGG 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 750
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 149, 365
PflMI CCANNNNNTGG 1 cut(s) 624
PkrI GCNGC 4 cut(s) 417, 474, 538, 610
Ple19I CGATCG 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 3 cut(s) 62, 186, 329
PspPI GGNCC 1 cut(s) 60
PstI CTGCAG 1 cut(s) 477
PsuI RGATCY 1 cut(s) 41
PvuI CGATCG 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 418
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 4 cut(s) 416, 473, 537, 609
Sau3AI GATC 5 cut(s) 41, 276, 303, 360, 763
Sau96I GGNCC 1 cut(s) 60
ScrFI CCNGG 3 cut(s) 107, 174, 182
SduI GDGCHC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 473
SinI GGWCC 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
SsiI CCGC 5 cut(s) 58, 90, 480, 484, 608
StyD4I CCNGG 3 cut(s) 105, 172, 180
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 9 cut(s) 16, 31, 127, 265, 544, 706, 718, 749, 779
TaiI ACGT 1 cut(s) 71
TaqI TCGA 4 cut(s) 302, 363, 460, 468
TauI GCSGC 1 cut(s) 611
TfiI GAWTC 2 cut(s) 149, 365
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 5 cut(s) 36, 625, 676, 711, 721
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 3 cut(s) 415, 472, 536
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 5 cut(s) 36, 625, 676, 711, 721
Van91I CCANNNNNTGG 1 cut(s) 624
Vha464I CTTAAG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.