Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

28596942 .. 28599060

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G284500.1_v2.0.a1.CDS.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAAGCACATGGGAATGGATGCTTATAGGTTTTCAATATCCTGGACTCGGATTTTCCCCAATGGAACTGGACAGATCAATCAGGCAGGCATTGATCACTACCATAGTCTCATCGATGCATTGCTATCCAAAGGTATTGAACCATATGTGACCCTCTATCATTGGGACCTTCCTCAAGCCCTGCAAAATGGGTTTCTCAACCATCAGATCATACAGGACTATGCAACATACATAGAGACGTGTTTTCAGAATTTCGGTGACAGGGTGAAGCACTGGATCACATTCAACGAGCCACATACAGTTGCTACACAAGCATATGATTTAGGTGCCCATGCACCAGGAAGTCAAAACAGAATGGATCAGTTGGGGCCTCATTTGATGTTATGGTATGAACCAGAAACAAACTCCACAGAAGACATTGAAGCAGCTCAAAGAGCCCAAGATTTTCAGCTTGGCTGGTATCTTGACCCTTTGTTTAGTGGAGATTATCCAAGCTCTAAGAAAAGTAAAGTTGGAAGCCGGCTGCCAACCTTTAACAAATCTGAGGCTACTCTGATTAAGGGGTCATTGGATTTTGTGGGCATTAATCAGTACACTACCTACTACGCCAGAAGAATGCTGCTGCTTTCTTACCTGATGCTACACTATTTGCTCATATGTAAATTGCAGGCCAATTCTTTTTGGTTGTACATAGTGCCTCAGGGGATGAGAAAATTAATGAACTACATCAAGCAAAAGTATAGCAACCCTCCAGTCTTTATCACTGAAAATGGCATGGATGATCCAAATAACCAGTTCATTTCCCTTCAGGATGCTCTGAATGAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008422 GO:0009507 GO:0009536 GO:0015926 GO:0016787 GO:0016798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

277

Amino Acids

31.9

Weight (kDa)

6.04

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AclWI	GGATC	3 cut(s)	284, 366, 776
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	791
AfaI	GTAC	2 cut(s)	593, 689
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	4 cut(s)	36, 140, 286, 422
AjiI	CACGTC	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	41, 337
AluBI	AGCT	3 cut(s)	428, 451, 495
AluI	AGCT	3 cut(s)	428, 451, 495
Alw26I	GTCTC	2 cut(s)	113, 230
AlwI	GGATC	3 cut(s)	284, 366, 776
AoxI	GGCC	2 cut(s)	368, 669
ApeKI	GCWGC	4 cut(s)	425, 523, 619, 622
ApoI	RAATTY	1 cut(s)	250
AseI	ATTAAT	2 cut(s)	585, 716
AspS9I	GGNCC	2 cut(s)	166, 368
AsuHPI	GGTGA	2 cut(s)	269, 277
AvaII	GGWCC	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	699
BaeGI	GKGCMC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	420
BbvI	GCAGC	4 cut(s)	437, 510, 606, 609
BccI	CCATC	1 cut(s)	210
BciT130I	CCWGG	2 cut(s)	43, 339
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	113, 230
BisI	GCNGC	4 cut(s)	426, 524, 620, 623
BlsI	GCNGC	4 cut(s)	427, 525, 621, 624
Bme1390I	CCNGG	2 cut(s)	43, 339
Bme18I	GGWCC	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	166, 368
BmiI	GGNNCC	3 cut(s)	167, 328, 369
BmrFI	CCNGG	2 cut(s)	43, 339
BmsI	GCATC	4 cut(s)	10, 106, 627, 802
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse118I	RCCGGY	1 cut(s)	519
Bse1I	ACTGG	4 cut(s)	73, 278, 752, 793
Bse21I	CCTNAGG	1 cut(s)	699
Bse3DI	GCAATG	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	43, 339
BseCI	ATCGAT	1 cut(s)	114
BseGI	GGATG	4 cut(s)	25, 711, 784, 817
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	119
BseMII	CTCAG	2 cut(s)	534, 713
BseNI	ACTGG	4 cut(s)	73, 278, 752, 793
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	4 cut(s)	437, 510, 606, 609
BshFI	GGCC	2 cut(s)	370, 671
BshNI	GGYRCC	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	520
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	2 cut(s)	113, 230
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	621
BsnI	GGCC	2 cut(s)	370, 671
Bsp1286I	GDGCHC	2 cut(s)	331, 439
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	6 cut(s)	75, 94, 207, 276, 358, 781
BspANI	GGCC	2 cut(s)	370, 671
BspCNI	CTCAG	2 cut(s)	535, 712
BspDI	ATCGAT	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	167, 328, 369
BspPI	GGATC	3 cut(s)	284, 366, 776
BspT107I	GGYRCC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	519
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	4 cut(s)	73, 278, 752, 793
BssAI	RCCGGY	1 cut(s)	519
BssMI	GATC	6 cut(s)	75, 94, 207, 276, 358, 781
Bst2UI	CCWGG	2 cut(s)	43, 339
Bst4CI	ACNGT	1 cut(s)	301
BstAUI	TGTACA	1 cut(s)	687
BstC8I	GCNNGC	3 cut(s)	88, 521, 669
BstDEI	CTNAG	3 cut(s)	498, 543, 699
BstF5I	GGATG	4 cut(s)	25, 711, 784, 817
BstKTI	GATC	6 cut(s)	78, 97, 210, 279, 361, 784
BstMAI	GTCTC	2 cut(s)	113, 230
BstMBI	GATC	6 cut(s)	75, 94, 207, 276, 358, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 434
BstNI	CCWGG	2 cut(s)	43, 339
BstSCI	CCNGG	2 cut(s)	41, 337
BstSLI	GKGCMC	1 cut(s)	331
BstV1I	GCAGC	4 cut(s)	437, 510, 606, 609
BstV2I	GAAGAC	1 cut(s)	420
Bsu15I	ATCGAT	1 cut(s)	114
Bsu36I	CCTNAGG	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	370, 671
BsuTUI	ATCGAT	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	240
BtsCI	GGATG	4 cut(s)	25, 711, 784, 817
BtsIMutI	CAGTG	2 cut(s)	271, 762
Cac8I	GCNNGC	3 cut(s)	88, 521, 669
Cfr10I	RCCGGY	1 cut(s)	519
Cfr13I	GGNCC	2 cut(s)	166, 368
ClaI	ATCGAT	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	592, 688
CviAII	CATG	3 cut(s)	10, 332, 775
CviQI	GTAC	2 cut(s)	592, 688
DdeI	CTNAG	3 cut(s)	498, 543, 699
DpnI	GATC	6 cut(s)	77, 96, 209, 278, 360, 783
DpnII	GATC	6 cut(s)	75, 94, 207, 276, 358, 781
Eco24I	GRGCYC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	791
Eco81I	CCTNAGG	1 cut(s)	699
EcoO109I	RGGNCCY	2 cut(s)	166, 368
EcoRII	CCWGG	2 cut(s)	41, 337
EcoT22I	ATGCAT	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	439
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	3 cut(s)	13, 335, 778
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	3 cut(s)	9, 331, 774
FauNDI	CATATG	3 cut(s)	145, 316, 656
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	426, 524, 620, 623
FokI	GGATG	4 cut(s)	32, 718, 791, 824
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	4 cut(s)	426, 524, 620, 623
GluI	GCNGC	4 cut(s)	426, 524, 620, 623
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	2 cut(s)	370, 671
HapII	CCGG	1 cut(s)	520
Hin1II	CATG	3 cut(s)	13, 335, 778
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	520
HphI	GGTGA	2 cut(s)	269, 277
Hpy166II	GTNNAC	1 cut(s)	594
Hpy188I	TCNGA	6 cut(s)	51, 207, 249, 544, 555, 819
Hpy188III	TCNNGA	2 cut(s)	464, 809
Hpy8I	GTNNAC	1 cut(s)	594
HpyAV	CCTTC	2 cut(s)	179, 815
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	5 cut(s)	119, 184, 224, 335, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 434
HpyF3I	CTNAG	3 cut(s)	498, 543, 699
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	13, 335, 778
KroI	GCCGGC	1 cut(s)	519
KroNI	GCCGGC	1 cut(s)	521
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	6 cut(s)	75, 94, 207, 276, 358, 781
Lsp1109I	GCAGC	4 cut(s)	437, 510, 606, 609
LweI	GCATC	4 cut(s)	10, 106, 627, 802
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	148, 257
MalI	GATC	6 cut(s)	77, 96, 209, 278, 360, 783
MboI	GATC	6 cut(s)	75, 94, 207, 276, 358, 781
MboII	GAAGA	2 cut(s)	425, 624
MhlI	GDGCHC	2 cut(s)	331, 439
MluCI	AATT	4 cut(s)	250, 662, 673, 713
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	6 cut(s)	164, 183, 381, 538, 708, 759
Mph1103I	ATGCAT	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	519
MseI	TTAA	4 cut(s)	534, 558, 585, 716
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	2 cut(s)	43, 339
Mva1269I	GAATGC	1 cut(s)	621
MvaI	CCWGG	2 cut(s)	43, 339
MwoI	GCNNNNNNNGC	2 cut(s)	311, 434
NaeI	GCCGGC	1 cut(s)	521
NdeI	CATATG	3 cut(s)	145, 316, 656
NdeII	GATC	6 cut(s)	75, 94, 207, 276, 358, 781
NgoMIV	GCCGGC	1 cut(s)	519
NlaIII	CATG	3 cut(s)	13, 335, 778
NlaIV	GGNNCC	3 cut(s)	167, 328, 369
NmuCI	GTSAC	2 cut(s)	148, 257
NsiI	ATGCAT	1 cut(s)	121
PctI	GAATGC	1 cut(s)	621
PdiI	GCCGGC	1 cut(s)	521
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	427, 525, 621, 624
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	166
PshBI	ATTAAT	2 cut(s)	585, 716
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	41, 337
PspGI	CCWGG	2 cut(s)	41, 337
PspN4I	GGNNCC	3 cut(s)	167, 328, 369
PspPI	GGNCC	2 cut(s)	166, 368
PspPPI	RGGWCCY	1 cut(s)	166
RsaI	GTAC	2 cut(s)	593, 689
RsaNI	GTAC	2 cut(s)	592, 688
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	4 cut(s)	534, 558, 585, 716
SatI	GCNGC	4 cut(s)	426, 524, 620, 623
Sau3AI	GATC	6 cut(s)	75, 94, 207, 276, 358, 781
Sau96I	GGNCC	2 cut(s)	166, 368
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	43, 339
SduI	GDGCHC	2 cut(s)	331, 439
SfaNI	GCATC	4 cut(s)	10, 106, 627, 802
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	4 cut(s)	250, 662, 673, 713
StyD4I	CCNGG	2 cut(s)	41, 337
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	114
TasI	AATT	4 cut(s)	250, 662, 673, 713
TatI	WGTACW	2 cut(s)	591, 687
Tru1I	TTAA	4 cut(s)	534, 558, 585, 716
Tru9I	TTAA	4 cut(s)	534, 558, 585, 716
TscAI	CASTG	2 cut(s)	278, 769
TseFI	GTSAC	2 cut(s)	148, 257
TseI	GCWGC	4 cut(s)	425, 523, 619, 622
Tsp45I	GTSAC	2 cut(s)	148, 257
TspDTI	ATGAA	4 cut(s)	17, 405, 734, 787
TspRI	CASTG	2 cut(s)	278, 769
VpaK11BI	GGWCC	1 cut(s)	166
VspI	ATTAAT	2 cut(s)	585, 716
XapI	RAATTY	1 cut(s)	250
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.