Prupe.1G288200_v2.0.a1

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
28789325 .. 28789952
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G288200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 579 bp
ATGGTAGGGCATAAGGCTCAGAACAAGTACCATGCACGGGACTTGGACCCATCGAAGCTGCCCAAAGGGAGGAAGCCCGAGAATCAACAAAAAAAAAGCATTCGCTGCAATACTTGTGGCAATTACATCTCCGAAGGCACCAAATTCAATTCTCGCAAAGAAGATGCCGTTGGAGAGAATTATTTTGAGGAACAAATACTTAGATTTTACTTCAAATGTCCCAAGTGCTCCGTTGAGCTCGTGATGAGGACAGACCCACAGAATTCAGACTATGTTGTGGAGGCCGGTGCTAGGCGAAATTTTGAACCCTGGCGCAATGAGGATAAGGAATTAGATGAGGAGAATAAAAAAAGGGAGGCTGAAGAAAATGGAGATAACAAGAAATCCTTGGAGAACAGAACCCGGGATTCAAAAAGAGAGATGAACAACGATGCTACAAATGTGAGTGACGATGATAAGTGGAAGGCTTTGGAACGAGAACACAAGGTTGCGGTAAAGGAGAAAAGCATTCAAGAGGAGGATGAAGCAACCTTGAAATCAGTAGTATTCCATAACTCAAAAGATTATGTTCGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

193

Amino Acids

22.61

Weight (kDa)

7.63

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AciI CCGC 1 cut(s) 491
AcsI RAATTY 3 cut(s) 143, 262, 298
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 3 cut(s) 37, 69, 291
AgsI TTSAA 6 cut(s) 148, 214, 305, 411, 512, 535
AjnI CCWGG 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 2 cut(s) 58, 238
AluI AGCT 2 cut(s) 58, 238
Alw21I GWGCWC 2 cut(s) 230, 240
Ama87I CYCGRG 2 cut(s) 77, 402
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 58, 105
ApoI RAATTY 3 cut(s) 143, 262, 298
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 2 cut(s) 403, 404
AsuII TTCGAA 1 cut(s) 571
AvaI CYCGRG 2 cut(s) 77, 402
AvaII GGWCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 240
BauI CACGAG 1 cut(s) 239
Bbv12I GWGCWC 2 cut(s) 230, 240
BbvI GCAGC 2 cut(s) 45, 92
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 310
BcnI CCSGG 2 cut(s) 403, 404
BfaI CTAG 1 cut(s) 291
BisI GCNGC 2 cut(s) 59, 106
BlsI GCNGC 2 cut(s) 60, 107
Bme1390I CCNGG 3 cut(s) 310, 403, 404
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 2 cut(s) 77, 402
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 48, 139
BmrFI CCNGG 3 cut(s) 310, 403, 404
BmsI GCATC 2 cut(s) 154, 421
Bpu14I TTCGAA 1 cut(s) 571
BpuMI CCSGG 2 cut(s) 403, 404
BsaJI CCNNGG 3 cut(s) 308, 387, 402
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 69, 291
Bse118I RCCGGY 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 3 cut(s) 308, 387, 402
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 3 cut(s) 37, 69, 291
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 32
BseRI GAGGAG 2 cut(s) 353, 530
BseXI GCAGC 2 cut(s) 45, 92
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 2 cut(s) 230, 240
BsiHKCI CYCGRG 2 cut(s) 77, 402
BsiSI CCGG 2 cut(s) 285, 403
BslFI GGGAC 2 cut(s) 53, 204
BslI CCNNNNNNNGG 3 cut(s) 37, 69, 291
BsmFI GGGAC 2 cut(s) 53, 204
BsmI GAATGC 2 cut(s) 99, 507
BsnI GGCC 1 cut(s) 284
BsoBI CYCGRG 2 cut(s) 77, 402
Bsp119I TTCGAA 1 cut(s) 571
Bsp1286I GDGCHC 2 cut(s) 230, 240
BspACI CCGC 1 cut(s) 491
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 48, 139
BspT104I TTCGAA 1 cut(s) 571
BspT107I GGYRCC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 3 cut(s) 308, 387, 402
BssSI CACGAG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 310
BstAPI GCANNNNNTGC 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 571
BstDEI CTNAG 2 cut(s) 18, 200
BstF5I GGATG 1 cut(s) 526
BstHHI GCGC 1 cut(s) 315
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 3 cut(s) 308, 401, 402
BstV1I GCAGC 2 cut(s) 45, 92
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 526
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 46
Cfr9I CCCGGG 1 cut(s) 402
Csp6I GTAC 1 cut(s) 28
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 1 cut(s) 32
CviJI RGCY 7 cut(s) 17, 58, 76, 238, 284, 359, 467
CviKI_1 RGCY 7 cut(s) 17, 58, 76, 238, 284, 359, 467
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 2 cut(s) 18, 200
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 381
Eco88I CYCGRG 2 cut(s) 77, 402
EcoICRI GAGCTC 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 1 cut(s) 35
FaiI YATR 5 cut(s) 12, 33, 273, 552, 567
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 2 cut(s) 53, 204
FatI CATG 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 59, 106
FokI GGATG 1 cut(s) 533
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 2 cut(s) 59, 106
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 314
GluI GCNGC 2 cut(s) 59, 106
HaeIII GGCC 1 cut(s) 284
HapII CCGG 2 cut(s) 285, 403
HhaI GCGC 1 cut(s) 315
Hin1II CATG 1 cut(s) 35
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 2 cut(s) 82, 407
HpaII CCGG 2 cut(s) 285, 403
Hpy188I TCNGA 3 cut(s) 21, 133, 268
Hpy188III TCNNGA 2 cut(s) 241, 512
HpyAV CCTTC 2 cut(s) 128, 457
HpyCH4V TGCA 2 cut(s) 35, 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 2 cut(s) 18, 200
Hsp92II CATG 1 cut(s) 35
HspAI GCGC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 4 cut(s) 295, 298, 322, 416
Lsp1109I GCAGC 2 cut(s) 45, 92
LweI GCATC 2 cut(s) 154, 421
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 446
MboII GAAGA 2 cut(s) 173, 374
MhlI GDGCHC 2 cut(s) 230, 240
MluCI AATT 7 cut(s) 121, 143, 148, 178, 262, 298, 329
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 9 cut(s) 63, 181, 240, 274, 313, 331, 349, 508, 511
MspI CCGG 2 cut(s) 285, 403
MspR9I CCNGG 3 cut(s) 310, 403, 404
Mva1269I GAATGC 2 cut(s) 99, 507
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 105
NciI CCSGG 2 cut(s) 403, 404
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 2 cut(s) 48, 139
NmuCI GTSAC 1 cut(s) 446
NspV TTCGAA 1 cut(s) 571
PctI GAATGC 2 cut(s) 99, 507
PfeI GAWTC 2 cut(s) 82, 407
PkrI GCNGC 2 cut(s) 60, 107
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 48, 139
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SacI GAGCTC 1 cut(s) 240
SatI GCNGC 2 cut(s) 59, 106
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 3 cut(s) 310, 403, 404
SduI GDGCHC 2 cut(s) 230, 240
SetI ASST 4 cut(s) 60, 240, 489, 533
SfaNI GCATC 2 cut(s) 154, 421
SfuI TTCGAA 1 cut(s) 571
SinI GGWCC 1 cut(s) 46
SmaI CCCGGG 1 cut(s) 404
Sse9I AATT 7 cut(s) 121, 143, 148, 178, 262, 298, 329
SsiI CCGC 1 cut(s) 491
SspMI CTAG 1 cut(s) 291
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 3 cut(s) 308, 401, 402
StyI CCWWGG 1 cut(s) 387
TaqI TCGA 2 cut(s) 53, 571
TasI AATT 7 cut(s) 121, 143, 148, 178, 262, 298, 329
TfiI GAWTC 2 cut(s) 82, 407
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 2 cut(s) 58, 105
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 437, 537
TspGWI ACGGA 1 cut(s) 220
TspMI CCCGGG 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 3 cut(s) 143, 262, 298
XmaI CCCGGG 1 cut(s) 402
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.