Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

28859004 .. 28861744

Gene Structure 2741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G289600.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCAGGAGCTTTGATCGATGTCAATCCTACGCCGATCTTGAAGAACGAGCTTGATATTGTGATCCCGACGATTCGAAACCTGGACTTCTTGGAGATGTGGAAGCCGTACTTCGAGCCCTACGACCTGATCATAGTCCAGGACGGTGACCCGTCGAGGACCATCAAGGTCCCAGATGGCTTCGACTGTGAGCTCTACAATTGGAACGACATCAACTGCATTCTGGGTCCCCAGGCCTCTTGCATTTCCTTCAAGGACTCTGCTTGCCGCTGCTTTGGCTACTTGGTCTCTAAGAAGAAGTACATCTTTACCATTGGCGACGATTGCTTTAACCGGCTAAATCTATCAACTCCTCTATTTTTCAACACTCTTTATGATCCATACAGAGAAGGCGCAGACTCTGTTCATGGATATCCTTTAAGACCAATTGGGTTTCTCCGTGGGGGTGTACCTACAGCTGTTTCTCATGGCCTCTGGCTCAACATCCCTGACTATGATGCTCCCACCCAGCTTGCTAATCCTCTAGAAAGGAACACTAGGTTTGTTGATGCAGTTCTGACCATACCCAAGGGAACTCTATTTCCTATGTGTGATATGAACTTGGCATTCAACCGTGAACTGATTGGACCACCAATGTACTTTGGACTCATGGGCGATGGTCAGCCAATTGGAAGATATGGTGATATGTGGGCTGGCTGGTGCATGAAGCAAAGCCAGGAATCTGTTAACCTCAAAAAGGAGTACTATGGTATCTTCTGGCAAGAAGAGCTGATCCCCTTCTTCCAGTTTGCAGTCCTTACAAAAGAATGCACTACTGTTCAGAAATGCTACGTCGAACTGTCAAAGCAAGTCAAGGCTAAGCTTGGCAAGATTGACCCATACTTCCTTAAGCTGGCAGATGCCATGGTTACTTGGGTAGAAGCTTGGGATGAGCTTAACGGAAAAGTATATGCCCCAGTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009225 GO:0009506 GO:0009832 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016866 GO:0030054 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052691 GO:0055044 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

322

Amino Acids

36.58

Weight (kDa)

5.04

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	3 cut(s)	58, 371, 766
AfaI	GTAC	5 cut(s)	110, 302, 450, 638, 743
AfiI	CCNNNNNNNGG	2 cut(s)	736, 892
AflII	CTTAAG	1 cut(s)	887
AgsI	TTSAA	4 cut(s)	43, 253, 364, 610
AjnI	CCWGG	4 cut(s)	81, 138, 231, 714
AloI	GAACNNNNNNTCC	2 cut(s)	565, 597
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	3 cut(s)	58, 371, 766
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	2 cut(s)	234, 469
ApeKI	GCWGC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	4 cut(s)	159, 169, 227, 626
AsuHPI	GGTGA	2 cut(s)	158, 692
AsuII	TTCGAA	1 cut(s)	76
AvaII	GGWCC	4 cut(s)	159, 169, 227, 626
BaeI	ACNNNNGTAYC	2 cut(s)	733, 766
BanII	GRGCYC	2 cut(s)	120, 195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	3 cut(s)	170, 170, 650
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	4 cut(s)	83, 140, 233, 716
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	524, 537
BfmI	CTRYAG	1 cut(s)	453
BfrI	CTTAAG	1 cut(s)	887
BisI	GCNGC	2 cut(s)	268, 271
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	2 cut(s)	269, 272
BmcAI	AGTACT	1 cut(s)	743
Bme1390I	CCNGG	4 cut(s)	83, 140, 233, 716
Bme18I	GGWCC	4 cut(s)	159, 169, 227, 626
BmgT120I	GGNCC	4 cut(s)	159, 169, 227, 626
BmiI	GGNNCC	3 cut(s)	171, 228, 229
BmrFI	CCNGG	4 cut(s)	83, 140, 233, 716
BmrI	ACTGGG	1 cut(s)	950
BmsI	GCATC	3 cut(s)	487, 538, 889
BmuI	ACTGGG	1 cut(s)	950
Bpu1102I	GCTNAGC	1 cut(s)	858
Bpu14I	TTCGAA	1 cut(s)	76
Bsa29I	ATCGAT	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	4 cut(s)	231, 439, 567, 903
Bsc4I	CCNNNNNNNGG	2 cut(s)	736, 892
Bse118I	RCCGGY	1 cut(s)	333
Bse1I	ACTGG	2 cut(s)	784, 956
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	4 cut(s)	83, 140, 233, 716
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	4 cut(s)	231, 439, 567, 903
BseGI	GGATG	2 cut(s)	483, 934
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	736, 892
BseNI	ACTGG	2 cut(s)	784, 956
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	507
BshFI	GGCC	2 cut(s)	236, 471
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	2 cut(s)	155, 213
BslI	CCNNNNNNNGG	2 cut(s)	736, 892
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	2 cut(s)	155, 213
BsmI	GAATGC	3 cut(s)	219, 605, 812
BsnI	GGCC	2 cut(s)	236, 471
Bso31I	GGTCTC	1 cut(s)	292
Bsp119I	TTCGAA	1 cut(s)	76
Bsp1286I	GDGCHC	2 cut(s)	120, 195
Bsp143I	GATC	6 cut(s)	15, 36, 63, 129, 376, 771
Bsp1720I	GCTNAGC	1 cut(s)	858
Bsp19I	CCATGG	1 cut(s)	903
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	2 cut(s)	236, 471
BspDI	ATCGAT	1 cut(s)	18
BspLI	GGNNCC	3 cut(s)	171, 228, 229
BspPI	GGATC	3 cut(s)	58, 371, 766
BspQI	GCTCTTC	1 cut(s)	759
BspT104I	TTCGAA	1 cut(s)	76
BspTI	CTTAAG	1 cut(s)	887
BspTNI	GGTCTC	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	784, 956
BssAI	RCCGGY	1 cut(s)	333
BssECI	CCNNGG	4 cut(s)	231, 439, 567, 903
BssMI	GATC	6 cut(s)	15, 36, 63, 129, 376, 771
BssT1I	CCWWGG	2 cut(s)	567, 903
Bst2UI	CCWGG	4 cut(s)	83, 140, 233, 716
Bst4CI	ACNGT	5 cut(s)	146, 188, 614, 817, 840
Bst6I	CTCTTC	1 cut(s)	759
BstAFI	CTTAAG	1 cut(s)	887
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	4 cut(s)	265, 513, 694, 894
BstDEI	CTNAG	2 cut(s)	291, 858
BstDSI	CCRYGG	2 cut(s)	439, 903
BstEII	GGTNACC	1 cut(s)	146
BstENI	CCTNNNNNAGG	1 cut(s)	734
BstF5I	GGATG	2 cut(s)	483, 934
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	6 cut(s)	18, 39, 66, 132, 379, 774
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	6 cut(s)	15, 36, 63, 129, 376, 771
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 324, 766
BstNI	CCWGG	4 cut(s)	83, 140, 233, 716
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	4 cut(s)	81, 138, 231, 714
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	257
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	236, 471
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	2 cut(s)	439, 903
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	483, 934
Cac8I	GCNNGC	4 cut(s)	265, 513, 694, 894
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	1 cut(s)	395
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	4 cut(s)	159, 169, 227, 626
ClaI	ATCGAT	1 cut(s)	18
Csp6I	GTAC	5 cut(s)	109, 301, 449, 637, 742
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	5 cut(s)	407, 467, 649, 703, 904
CviQI	GTAC	5 cut(s)	109, 301, 449, 637, 742
DdeI	CTNAG	2 cut(s)	291, 858
DpnI	GATC	6 cut(s)	17, 38, 65, 131, 378, 773
DpnII	GATC	6 cut(s)	15, 36, 63, 129, 376, 771
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	567, 903
Eco147I	AGGCCT	1 cut(s)	236
Eco24I	GRGCYC	2 cut(s)	120, 195
Eco31I	GGTCTC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	413
Eco47I	GGWCC	4 cut(s)	159, 169, 227, 626
Eco53kI	GAGCTC	1 cut(s)	193
Eco91I	GGTNACC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	734
EcoO109I	RGGNCCY	2 cut(s)	169, 227
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	4 cut(s)	81, 138, 231, 714
EcoRV	GATATC	1 cut(s)	413
EcoT14I	CCWWGG	2 cut(s)	567, 903
EcoT38I	GRGCYC	2 cut(s)	120, 195
ErhI	CCWWGG	2 cut(s)	567, 903
FaeI	CATG	5 cut(s)	410, 470, 652, 706, 907
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 290, 322
FaqI	GGGAC	2 cut(s)	155, 213
FatI	CATG	5 cut(s)	406, 466, 648, 702, 903
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	268, 271
FokI	GGATG	2 cut(s)	470, 941
FriOI	GRGCYC	2 cut(s)	120, 195
Fsp4HI	GCNGC	2 cut(s)	268, 271
FspBI	CTAG	2 cut(s)	524, 537
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	2 cut(s)	268, 271
GsaI	CCCAGC	1 cut(s)	511
HaeIII	GGCC	2 cut(s)	236, 471
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	5 cut(s)	410, 470, 652, 706, 907
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	2 cut(s)	860, 921
HinfI	GANTC	5 cut(s)	73, 257, 398, 645, 719
HpaI	GTTAAC	1 cut(s)	727
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	2 cut(s)	158, 692
Hpy166II	GTNNAC	3 cut(s)	449, 617, 727
Hpy188I	TCNGA	2 cut(s)	558, 822
Hpy188III	TCNNGA	3 cut(s)	40, 67, 524
Hpy8I	GTNNAC	3 cut(s)	449, 617, 727
Hpy99I	CGWCG	4 cut(s)	73, 157, 323, 836
HpyAV	CCTTC	3 cut(s)	259, 383, 787
HpyCH4III	ACNGT	5 cut(s)	146, 188, 614, 817, 840
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	6 cut(s)	219, 243, 551, 702, 791, 810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 324, 766
HpyF3I	CTNAG	2 cut(s)	291, 858
HpySE526I	ACGT	1 cut(s)	831
Hsp92II	CATG	5 cut(s)	410, 470, 652, 706, 907
HspAI	GCGC	1 cut(s)	393
KflI	GGGWCCC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	129
KspAI	GTTAAC	1 cut(s)	727
Kzo9I	GATC	6 cut(s)	15, 36, 63, 129, 376, 771
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	2 cut(s)	8, 505
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	3 cut(s)	487, 538, 889
MaeI	CTAG	2 cut(s)	524, 537
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	2 cut(s)	146, 907
MalI	GATC	6 cut(s)	17, 38, 65, 131, 378, 773
MboI	GATC	6 cut(s)	15, 36, 63, 129, 376, 771
MboII	GAAGA	6 cut(s)	55, 307, 684, 745, 772, 776
MfeI	CAATTG	3 cut(s)	199, 426, 666
MhlI	GDGCHC	2 cut(s)	120, 195
MluCI	AATT	3 cut(s)	199, 426, 666
MlyI	GAGTC	3 cut(s)	251, 392, 639
MnlI	CCTC	6 cut(s)	150, 247, 363, 482, 531, 740
MseI	TTAA	5 cut(s)	330, 419, 726, 888, 936
MspA1I	CMGCKG	2 cut(s)	270, 458
MspCI	CTTAAG	1 cut(s)	887
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	4 cut(s)	83, 140, 233, 716
MunI	CAATTG	3 cut(s)	199, 426, 666
Mva1269I	GAATGC	3 cut(s)	219, 605, 812
MvaI	CCWGG	4 cut(s)	83, 140, 233, 716
MwoI	GCNNNNNNNGC	3 cut(s)	276, 324, 766
NcoI	CCATGG	1 cut(s)	903
NdeII	GATC	6 cut(s)	15, 36, 63, 129, 376, 771
NlaIII	CATG	5 cut(s)	410, 470, 652, 706, 907
NlaIV	GGNNCC	3 cut(s)	171, 228, 229
NmuCI	GTSAC	1 cut(s)	146
NspV	TTCGAA	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PctI	GAATGC	3 cut(s)	219, 605, 812
PfeI	GAWTC	2 cut(s)	73, 719
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	269, 272
PleI	GAGTC	3 cut(s)	251, 392, 639
PpsI	GAGTC	3 cut(s)	251, 392, 639
PpuMI	RGGWCCY	2 cut(s)	169, 227
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	2 cut(s)	169, 227
Psp6I	CCWGG	4 cut(s)	81, 138, 231, 714
PspEI	GGTNACC	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	507
PspGI	CCWGG	4 cut(s)	81, 138, 231, 714
PspN4I	GGNNCC	3 cut(s)	171, 228, 229
PspPI	GGNCC	4 cut(s)	159, 169, 227, 626
PspPPI	RGGWCCY	2 cut(s)	169, 227
PstNI	CAGNNNCTG	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	5 cut(s)	110, 302, 450, 638, 743
RsaNI	GTAC	5 cut(s)	109, 301, 449, 637, 742
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	5 cut(s)	330, 419, 726, 888, 936
SatI	GCNGC	2 cut(s)	268, 271
Sau3AI	GATC	6 cut(s)	15, 36, 63, 129, 376, 771
Sau96I	GGNCC	4 cut(s)	159, 169, 227, 626
ScaI	AGTACT	1 cut(s)	743
SchI	GAGTC	3 cut(s)	251, 392, 639
ScrFI	CCNGG	4 cut(s)	83, 140, 233, 716
SduI	GDGCHC	2 cut(s)	120, 195
SfaNI	GCATC	3 cut(s)	487, 538, 889
SfcI	CTRYAG	1 cut(s)	453
SfuI	TTCGAA	1 cut(s)	76
SinI	GGWCC	4 cut(s)	159, 169, 227, 626
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
Sse9I	AATT	3 cut(s)	199, 426, 666
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	524, 537
SstI	GAGCTC	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	4 cut(s)	81, 138, 231, 714
StyI	CCWWGG	2 cut(s)	567, 903
TaaI	ACNGT	5 cut(s)	146, 188, 614, 817, 840
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	6 cut(s)	18, 76, 114, 155, 183, 834
TasI	AATT	3 cut(s)	199, 426, 666
TatI	WGTACW	3 cut(s)	300, 636, 741
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	73, 719
Tru1I	TTAA	5 cut(s)	330, 419, 726, 888, 936
Tru9I	TTAA	5 cut(s)	330, 419, 726, 888, 936
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	3 cut(s)	395, 611, 719
TspGWI	ACGGA	2 cut(s)	428, 954
Vha464I	CTTAAG	1 cut(s)	887
VpaK11BI	GGWCC	4 cut(s)	159, 169, 227, 626
XagI	CCTNNNNNAGG	1 cut(s)	734
XbaI	TCTAGA	1 cut(s)	523
XspI	CTAG	2 cut(s)	524, 537
ZrmI	AGTACT	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.