Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

29284925 .. 29286548

Gene Structure 1624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G296400.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGTTCTAAGGCTCAATTGGTCATCACGGAGCCTGAGTTATGCAAAGATACTGAATAACAAAGACAAAGCTTATCGCAAAAGAGAGCCTGAAAGCTTTGTGAAGAAGCTCTTAGGAGATGGACTTGTGACAACAGCAGAAGAAGTTATTTCTAGAACAGCATTTAGCAGCTTCTATATAGAAGGACAACACATTTTTGAGATGTTGATGAAATTAGGCTTCCTGTTAACCAAAAATTCTCTCACAATAAGGGTTCCTGGCATCAGTAAGCTTTTCAAAACCGGTGATGAGATCGAATCAGAGAAACTTGAAAAAGATGTACGTGCCTCCATATTAGGGGGATTGTCAGGAAAAGAGAAGAGAAGCCAGAGGATTTCAGTGGATGATTTAATTGATGATTGCAAGACTTTTTATGTCGCTGGACAAGAAACCACTAATTCTTTGCTTGCTTGGACTGTCTTTCTTCTGGCACACCACACAGATTGGCAAGAGGAAGCAAGAAAAGAGGTCCTACAAATATTTGGCAAACAAACTCCAAACCCTGATGGCATTGCCAAACTGAAAACAATGAGTATGGTGATCAATGAGTGTCTAAGGTTATATTCCCCTGTTGGTTCTCTGTCAAGGAAAGCTGAAAGGGAAGTTAAACTAGGAAAGCTTATTGTTCCTGCTAATGTTGACTTGCATGCTAATCGATTCACAGAAGGGGTTGCTAAAGCTACTAACAATAACGCAGGCGCTTTCCTACCCTTTGGAGTAGGACCTCGAACTTGTGTGGGATTGAACTTTGCGGCCATTGAAGCAAAGATTGCTCTGTCGATGGTTCTACAGCGCTACTCCTTCACCCTTTCCCCGGGTTATGTCCACTTGTCCCTTCAGCAAGTAACAAATCGCCCACTCCGTGGAGTTCAAGTAATGCTATATTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

311

Amino Acids

34.63

Weight (kDa)

9.5

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	902
AciI	CCGC	1 cut(s)	791
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	860
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	1 cut(s)	321
AfeI	AGCGCT	1 cut(s)	833
AfiI	CCNNNNNNNGG	3 cut(s)	336, 853, 902
AgeI	ACCGGT	1 cut(s)	281
AgsI	TTSAA	5 cut(s)	277, 311, 784, 800, 911
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	8 cut(s)	71, 96, 109, 171, 271, 632, 658, 719
AluI	AGCT	8 cut(s)	71, 96, 109, 171, 271, 632, 658, 719
Ama87I	CYCGRG	1 cut(s)	853
Aor51HI	AGCGCT	1 cut(s)	833
AoxI	GGCC	1 cut(s)	792
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	235
AsiGI	ACCGGT	1 cut(s)	281
AspLEI	GCGC	2 cut(s)	740, 834
AspS9I	GGNCC	2 cut(s)	508, 761
AsuC2I	CCSGG	2 cut(s)	854, 855
AsuHPI	GGTGA	3 cut(s)	296, 589, 835
AvaI	CYCGRG	1 cut(s)	853
AvaII	GGWCC	2 cut(s)	508, 761
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	3 cut(s)	113, 539, 814
BcgI	CGANNNNNNTGC	2 cut(s)	674, 708
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	579
BcnI	CCSGG	2 cut(s)	854, 855
BfaI	CTAG	2 cut(s)	153, 650
BfmI	CTRYAG	1 cut(s)	827
BfoI	RGCGCY	2 cut(s)	741, 835
BisI	GCNGC	2 cut(s)	169, 792
BlsI	GCNGC	2 cut(s)	170, 793
Bme1390I	CCNGG	3 cut(s)	258, 854, 855
Bme18I	GGWCC	2 cut(s)	508, 761
BmeT110I	CYCGRG	1 cut(s)	853
BmgT120I	GGNCC	2 cut(s)	508, 761
BmiI	GGNNCC	2 cut(s)	32, 255
BmrFI	CCNGG	3 cut(s)	258, 854, 855
BmsI	GCATC	1 cut(s)	270
BpuMI	CCSGG	2 cut(s)	854, 855
Bsa29I	ATCGAT	1 cut(s)	694
BsaAI	YACGTR	1 cut(s)	323
BsaJI	CCNNGG	3 cut(s)	852, 853, 901
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 897, 927
Bsc4I	CCNNNNNNNGG	3 cut(s)	336, 853, 902
Bse118I	RCCGGY	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	258
BseCI	ATCGAT	1 cut(s)	694
BseDI	CCNNGG	3 cut(s)	852, 853, 901
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	3 cut(s)	336, 853, 902
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	180
BshFI	GGCC	1 cut(s)	794
BshTI	ACCGGT	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	694
BsiHKCI	CYCGRG	1 cut(s)	853
BsiSI	CCGG	2 cut(s)	282, 854
BslFI	GGGAC	1 cut(s)	856
BslI	CCNNNNNNNGG	3 cut(s)	336, 853, 902
BsmFI	GGGAC	1 cut(s)	856
BsnI	GGCC	1 cut(s)	794
BsoBI	CYCGRG	1 cut(s)	853
Bsp143I	GATC	2 cut(s)	291, 579
BspACI	CCGC	1 cut(s)	791
BspANI	GGCC	1 cut(s)	794
BspCNI	CTCAG	1 cut(s)	27
BspDI	ATCGAT	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	32, 255
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	852, 853, 901
BssMI	GATC	2 cut(s)	291, 579
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	3 cut(s)	447, 687, 736
BstDEI	CTNAG	4 cut(s)	8, 35, 112, 593
BstDSI	CCRYGG	1 cut(s)	901
BstF5I	GGATG	1 cut(s)	388
BstH2I	RGCGCY	2 cut(s)	741, 835
BstHHI	GCGC	2 cut(s)	740, 834
BstKTI	GATC	2 cut(s)	294, 582
BstMBI	GATC	2 cut(s)	291, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	800, 809
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	689
BstSCI	CCNGG	3 cut(s)	256, 852, 853
BstSFI	CTRYAG	1 cut(s)	827
BstV1I	GCAGC	1 cut(s)	180
Bsu15I	ATCGAT	1 cut(s)	694
BsuRI	GGCC	1 cut(s)	794
BsuTUI	ATCGAT	1 cut(s)	694
BtgI	CCRYGG	1 cut(s)	901
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	3 cut(s)	447, 687, 736
CfoI	GCGC	2 cut(s)	740, 834
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	508, 761
Cfr9I	CCCGGG	1 cut(s)	853
ClaI	ATCGAT	1 cut(s)	694
Csp6I	GTAC	1 cut(s)	320
CspAI	ACCGGT	1 cut(s)	281
CspCI	CAANNNNNGTGG	2 cut(s)	464, 499
CviAII	CATG	1 cut(s)	686
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	4 cut(s)	8, 35, 112, 593
DpnI	GATC	2 cut(s)	293, 581
DpnII	GATC	2 cut(s)	291, 579
DraIII	CACNNNGTG	1 cut(s)	902
EaeI	YGGCCR	1 cut(s)	792
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco47I	GGWCC	2 cut(s)	508, 761
Eco47III	AGCGCT	1 cut(s)	833
Eco57I	CTGAAG	1 cut(s)	860
Eco88I	CYCGRG	1 cut(s)	853
EcoO109I	RGGNCCY	2 cut(s)	508, 761
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	689
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	1 cut(s)	856
FatI	CATG	1 cut(s)	685
FbaI	TGATCA	1 cut(s)	579
Fnu4HI	GCNGC	2 cut(s)	169, 792
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	2 cut(s)	169, 792
FspBI	CTAG	2 cut(s)	153, 650
GlaI	GCGC	2 cut(s)	739, 833
GluI	GCNGC	2 cut(s)	169, 792
HaeII	RGCGCY	2 cut(s)	741, 835
HaeIII	GGCC	1 cut(s)	794
HapII	CCGG	2 cut(s)	282, 854
HhaI	GCGC	2 cut(s)	740, 834
Hin1II	CATG	1 cut(s)	689
Hin6I	GCGC	2 cut(s)	738, 832
HinP1I	GCGC	2 cut(s)	738, 832
HincII	GTYRAC	2 cut(s)	228, 679
HindII	GTYRAC	2 cut(s)	228, 679
HindIII	AAGCTT	4 cut(s)	69, 94, 269, 656
HinfI	GANTC	2 cut(s)	296, 696
HpaI	GTTAAC	1 cut(s)	228
HpaII	CCGG	2 cut(s)	282, 854
HphI	GGTGA	3 cut(s)	296, 589, 835
Hpy166II	GTNNAC	3 cut(s)	228, 679, 865
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	2 cut(s)	153, 348
Hpy8I	GTNNAC	3 cut(s)	228, 679, 865
HpyAV	CCTTC	4 cut(s)	176, 698, 850, 884
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	3 cut(s)	44, 402, 685
HpyF10VI	GCNNNNNNNGC	2 cut(s)	800, 809
HpyF3I	CTNAG	4 cut(s)	8, 35, 112, 593
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	1 cut(s)	689
HspAI	GCGC	2 cut(s)	738, 832
Ksp22I	TGATCA	1 cut(s)	579
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	291, 579
LmnI	GCTCC	1 cut(s)	30
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	2 cut(s)	153, 650
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	2 cut(s)	127, 883
MalI	GATC	2 cut(s)	293, 581
MboI	GATC	2 cut(s)	291, 579
MboII	GAAGA	4 cut(s)	115, 152, 370, 455
MfeI	CAATTG	1 cut(s)	16
MluCI	AATT	5 cut(s)	16, 212, 235, 390, 436
MnlI	CCTC	5 cut(s)	337, 363, 484, 499, 774
MseI	TTAA	3 cut(s)	227, 389, 645
MspI	CCGG	2 cut(s)	282, 854
MspR9I	CCNGG	3 cut(s)	258, 854, 855
MunI	CAATTG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	800, 809
NciI	CCSGG	2 cut(s)	854, 855
NdeII	GATC	2 cut(s)	291, 579
NlaIII	CATG	1 cut(s)	689
NlaIV	GGNNCC	2 cut(s)	32, 255
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	689
PaeI	GCATGC	1 cut(s)	689
PcsI	WCGNNNNNNNCGW	1 cut(s)	898
PfeI	GAWTC	2 cut(s)	296, 696
PflMI	CCANNNNNTGG	1 cut(s)	902
PinAI	ACCGGT	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	170, 793
Ppu21I	YACGTR	1 cut(s)	323
PpuMI	RGGWCCY	2 cut(s)	508, 761
Psp5II	RGGWCCY	2 cut(s)	508, 761
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	32, 255
PspPI	GGNCC	2 cut(s)	508, 761
PspPPI	RGGWCCY	2 cut(s)	508, 761
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	227, 389, 645
SatI	GCNGC	2 cut(s)	169, 792
Sau3AI	GATC	2 cut(s)	291, 579
Sau96I	GGNCC	2 cut(s)	508, 761
ScrFI	CCNGG	3 cut(s)	258, 854, 855
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	827
SinI	GGWCC	2 cut(s)	508, 761
SmaI	CCCGGG	1 cut(s)	855
SphI	GCATGC	1 cut(s)	689
Sse9I	AATT	5 cut(s)	16, 212, 235, 390, 436
SsiI	CCGC	1 cut(s)	791
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	2 cut(s)	153, 650
StyD4I	CCNGG	3 cut(s)	256, 852, 853
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	4 cut(s)	294, 694, 766, 818
TasI	AATT	5 cut(s)	16, 212, 235, 390, 436
TauI	GCSGC	1 cut(s)	794
TfiI	GAWTC	2 cut(s)	296, 696
Tru1I	TTAA	3 cut(s)	227, 389, 645
Tru9I	TTAA	3 cut(s)	227, 389, 645
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	2 cut(s)	43, 890
TspMI	CCCGGG	1 cut(s)	853
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	902
VpaK11BI	GGWCC	2 cut(s)	508, 761
XapI	RAATTY	1 cut(s)	235
XbaI	TCTAGA	1 cut(s)	152
XceI	RCATGY	1 cut(s)	689
XmaI	CCCGGG	1 cut(s)	853
XspI	CTAG	2 cut(s)	153, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.