Prupe.1G326300_v2.0.a1

PITH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
31065775 .. 31066978
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G326300.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 291 bp
ATGAAACCTAACTGGGTACCACGCGAGAAAAAGAAGCGAACCACATGCAGCCACAGTCAAGTCCAGAACGAGAACGACTGTCCTTTAATGACCAACAATCAAAGTTCGAAAATGGTTCCTGGGCGGGTCTGCCATCTCTGCAAATGCATCAAGCTAGCGACTCACTCTTTCTCATCGTTTATCAACAACGTAAAGAGGGATGTTGTGGCAACAATTGTTTATGAACTCAGGCCAAATCCTTCCGATCACAAGACAAAGGCTAAAGGTGGGGGTCTTTCACATGTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH

Protein Analysis

97

Amino Acids

10.82

Weight (kDa)

9.67

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AccII CGCG 1 cut(s) 24
AciI CCGC 1 cut(s) 124
AfaI GTAC 1 cut(s) 18
AflIII ACRYGT 1 cut(s) 280
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 107
AsuNHI GCTAGC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciT130I CCWGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 18, 117
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 156
BmtI GCTAGC 1 cut(s) 158
BmuI ACTGGG 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 16
BsnI GGCC 1 cut(s) 232
Bsp119I TTCGAA 1 cut(s) 107
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 240
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 18, 117
BspOI GCTAGC 1 cut(s) 158
BspT104I TTCGAA 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 16
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 56, 80
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 2 cut(s) 48, 284
BstSCI CCNGG 1 cut(s) 118
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 17
CviAII CATG 2 cut(s) 45, 281
CviJI RGCY 4 cut(s) 51, 154, 232, 260
CviKI_1 RGCY 4 cut(s) 51, 154, 232, 260
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 227
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 149
FaeI CATG 2 cut(s) 48, 284
FaiI YATR 3 cut(s) 46, 222, 282
FatI CATG 2 cut(s) 44, 280
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 1 cut(s) 155
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 2 cut(s) 48, 284
HinfI GANTC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 2 cut(s) 56, 80
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 48, 141, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 2 cut(s) 48, 284
KpnI GGTACC 1 cut(s) 20
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 4 cut(s) 77, 105, 132, 214
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 1 cut(s) 156
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 189
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MfeI CAATTG 1 cut(s) 213
MluCI AATT 1 cut(s) 213
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 1 cut(s) 189
Mph1103I ATGCAT 1 cut(s) 149
MseI TTAA 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 120
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 138
NdeII GATC 1 cut(s) 244
NheI GCTAGC 1 cut(s) 154
NlaIII CATG 2 cut(s) 48, 284
NlaIV GGNNCC 2 cut(s) 18, 117
NsiI ATGCAT 1 cut(s) 149
NspI RCATGY 2 cut(s) 48, 284
NspV TTCGAA 1 cut(s) 107
PciI ACATGT 1 cut(s) 280
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PscI ACATGT 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 18, 117
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 1 cut(s) 244
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 120
SetI ASST 4 cut(s) 10, 156, 192, 268
SfaNI GCATC 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 107
Sse9I AATT 1 cut(s) 213
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 56, 80
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 107
TasI AATT 1 cut(s) 213
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseI GCWGC 1 cut(s) 48
TspDTI ATGAA 2 cut(s) 17, 237
XceI RCATGY 2 cut(s) 48, 284
XspI CTAG 1 cut(s) 155
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.