Prupe.1G347700_v2.0.a1

Metal dependent phosphohydrolases with conserved 'HD' motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
32495431 .. 32498485
3055 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G347700.1_v2.0.a1.CDS.7

Sequence Viewer

Length: 1014 bp
ATGGCATTTCGTCGTGCACCTTGCGTGCATCTTGGGGTCATCTTGCAGCTAGTCATGCGGTCTACTCAGACCTCCACTCGCTGTCCACAGCCATATTTCCGGCCATTTCATGGGATCGTGCGACCCCTCTTGTCCCTTAATCCGTCCGCCACTGATCCTAATGGCAATGACGCGCAGAGCAAGCCCTTTACTAGAAAAAAAAGGCTGCAAGTCTTCCAGTCAAATCTTCCACTCCAATCCAAATACCAAGTAAAGATTAGTGTCTGCTCTCTAGAGAGAGAGAAGAAATTAAAGCAGGGAAGGGAAGGGAAGAGAACGATGGGGTCAGTGAGATCATGGGAAGAGACGGTGAGAAAGGCAGAGAAGCTGGTGGAGGAAGCCATGAAAGACAATGATGCATCCCACGACGCAGCTCACGTCTGGAGGGTCAGAGACCTCGCTCTCTCTCTTGCCCTTGAAGAACAAGGCCTCTCCCTCCTCTCCTCCAATTCCAACACCATGCAAATTGTCGAACTTGCTGCACTTCTCCATGATATAGGTGATTATAAGTATTTGAGAGATCCCTCAGAGGAAAAAATTGTCGAAAACTTTCTTGACGAGGAGGGCATAGAAGAGAGTACCAAAATGAAGATTTTAAAGATCATTAAGGGAATGGGTTTCAAAGATGAGCTTGCAGGGTCTGCAAATAATGATCTTCCTCCAGAATTTGGGGTTGTACAAGATGCTGACCGTCTCGATGCAATTGGTGCTATTGGAATTGCTCGTTGCTTTACTTTTGGTGGAAGTAGAAACAGAGTGCTACATGATCCTAACATTCAGCCACGATCTGATTTATCCAAGGAAAAGTACATGAAAAAAGATGAGCAGACTACTGTGAATCACTTTCACGAGAAGCTTCTTAAGCTAAAGTCATTGATGAAAACAAAGGCTGGGCAAAAGAGAGCTGAGAGAAGGCACAAGTTCATGGAGGAGTTTCTTGTGGAGTTCTATGAAGAGTGGGATGGGAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HD

Protein Analysis

338

Amino Acids

38.5

Weight (kDa)

9.07

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
AccB7I CCANNNNNTGG 2 cut(s) 110, 707
AccI GTMKAC 1 cut(s) 62
AccII CGCG 1 cut(s) 173
AciI CCGC 2 cut(s) 58, 147
AclWI GGATC 4 cut(s) 122, 149, 554, 800
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 1 cut(s) 704
AfaI GTAC 3 cut(s) 619, 717, 848
AfiI CCNNNNNNNGG 2 cut(s) 110, 707
AflII CTTAAG 1 cut(s) 899
AgsI TTSAA 2 cut(s) 458, 661
AjiI CACGTC 1 cut(s) 418
AluBI AGCT 8 cut(s) 49, 367, 413, 670, 895, 904, 944, 1010
AluI AGCT 8 cut(s) 49, 367, 413, 670, 895, 904, 944, 1010
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 3 cut(s) 338, 426, 737
Alw44I GTGCAC 1 cut(s) 15
AlwI GGATC 4 cut(s) 122, 149, 554, 800
AlwNI CAGNNNCTG 1 cut(s) 680
AoxI GGCC 2 cut(s) 101, 466
ApaLI GTGCAC 1 cut(s) 15
ApeKI GCWGC 4 cut(s) 46, 205, 410, 518
ApoI RAATTY 1 cut(s) 704
Asp700I GAANNNNTTC 1 cut(s) 588
AspLEI GCGC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 361, 551
BaeGI GKGCMC 1 cut(s) 19
BauI CACGAG 1 cut(s) 887
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 4 cut(s) 58, 192, 422, 505
BccI CCATC 2 cut(s) 313, 995
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BcoDI GTCTC 3 cut(s) 338, 426, 737
BfaI CTAG 3 cut(s) 50, 192, 272
BfrI CTTAAG 1 cut(s) 899
BisI GCNGC 4 cut(s) 47, 206, 411, 519
BlsI GCNGC 4 cut(s) 48, 207, 412, 520
BmgBI CACGTC 1 cut(s) 418
BmsI GCATC 5 cut(s) 37, 385, 407, 712, 727
BpiI GAAGAC 1 cut(s) 205
BpmI CTGGAG 2 cut(s) 442, 684
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 837
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 707
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 837
BseGI GGATG 2 cut(s) 398, 1006
BseLI CCNNNNNNNGG 2 cut(s) 110, 707
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 3 cut(s) 80, 579, 936
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 4 cut(s) 467, 472, 614, 983
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 4 cut(s) 58, 192, 422, 505
BseYI CCCAGC 1 cut(s) 929
BsgI GTGCAG 1 cut(s) 504
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 2 cut(s) 103, 468
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 110, 707
BsmAI GTCTC 3 cut(s) 338, 426, 737
BsmBI CGTCTC 2 cut(s) 338, 737
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 2 cut(s) 103, 468
Bso31I GGTCTC 1 cut(s) 426
Bsp1286I GDGCHC 1 cut(s) 19
Bsp1407I TGTACA 1 cut(s) 715
Bsp143I GATC 8 cut(s) 114, 154, 332, 559, 639, 691, 805, 824
BspACI CCGC 2 cut(s) 58, 147
BspANI GGCC 2 cut(s) 103, 468
BspCNI CTCAG 3 cut(s) 79, 578, 937
BspFNI CGCG 1 cut(s) 173
BspPI GGATC 4 cut(s) 122, 149, 554, 800
BspTI CTTAAG 1 cut(s) 899
BspTNI GGTCTC 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 172
BsrGI TGTACA 1 cut(s) 715
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 837
BssMI GATC 8 cut(s) 114, 154, 332, 559, 639, 691, 805, 824
BssSI CACGAG 1 cut(s) 887
BssT1I CCWWGG 1 cut(s) 837
Bst2BI CACGAG 1 cut(s) 887
Bst4CI ACNGT 3 cut(s) 349, 731, 874
Bst6I CTCTTC 4 cut(s) 305, 336, 606, 987
BstAFI CTTAAG 1 cut(s) 899
BstAPI GCANNNNNTGC 2 cut(s) 680, 746
BstAUI TGTACA 1 cut(s) 715
BstC8I GCNNGC 3 cut(s) 26, 182, 672
BstDEI CTNAG 3 cut(s) 66, 565, 945
BstF5I GGATG 2 cut(s) 398, 1006
BstFNI CGCG 1 cut(s) 173
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 8 cut(s) 117, 157, 335, 562, 642, 694, 808, 827
BstMAI GTCTC 3 cut(s) 338, 426, 737
BstMBI GATC 8 cut(s) 114, 154, 332, 559, 639, 691, 805, 824
BstMWI GCNNNNNNNGC 5 cut(s) 55, 181, 680, 746, 901
BstSLI GKGCMC 1 cut(s) 19
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 4 cut(s) 58, 192, 422, 505
BstV2I GAAGAC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BsuRI GGCC 2 cut(s) 103, 468
BtrI CACGTC 1 cut(s) 418
BtsCI GGATG 2 cut(s) 398, 1006
BtsIMutI CAGTG 2 cut(s) 150, 333
Cac8I GCNNGC 3 cut(s) 26, 182, 672
CaiI CAGNNNCTG 1 cut(s) 680
CfoI GCGC 1 cut(s) 175
CseI GACGC 2 cut(s) 179, 416
Csp6I GTAC 3 cut(s) 618, 716, 847
CviAII CATG 9 cut(s) 55, 110, 336, 382, 499, 530, 803, 850, 964
CviQI GTAC 3 cut(s) 618, 716, 847
DdeI CTNAG 3 cut(s) 66, 565, 945
DpnI GATC 8 cut(s) 116, 156, 334, 561, 641, 693, 807, 826
DpnII GATC 8 cut(s) 114, 154, 332, 559, 639, 691, 805, 824
DraI TTTAAA 1 cut(s) 636
EaeI YGGCCR 1 cut(s) 101
Eam1104I CTCTTC 4 cut(s) 305, 336, 606, 987
EarI CTCTTC 4 cut(s) 305, 336, 606, 987
EciI GGCGGA 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 837
Eco147I AGGCCT 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 837
EcoT22I ATGCAT 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 837
Esp3I CGTCTC 2 cut(s) 338, 737
FaeI CATG 9 cut(s) 58, 113, 339, 385, 502, 533, 806, 853, 967
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FaqI GGGAC 1 cut(s) 118
FatI CATG 9 cut(s) 54, 109, 335, 381, 498, 529, 802, 849, 963
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 4 cut(s) 47, 206, 411, 519
FokI GGATG 1 cut(s) 385
Fsp4HI GCNGC 4 cut(s) 47, 206, 411, 519
FspBI CTAG 3 cut(s) 50, 192, 272
GlaI GCGC 1 cut(s) 174
GluI GCNGC 4 cut(s) 47, 206, 411, 519
GsaI CCCAGC 1 cut(s) 933
GsuI CTGGAG 2 cut(s) 442, 684
HaeIII GGCC 2 cut(s) 103, 468
HapII CCGG 1 cut(s) 100
HgaI GACGC 2 cut(s) 179, 416
HhaI GCGC 1 cut(s) 175
Hin1II CATG 9 cut(s) 58, 113, 339, 385, 502, 533, 806, 853, 967
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 893
HinfI GANTC 1 cut(s) 877
HpaII CCGG 1 cut(s) 100
HphI GGTGA 2 cut(s) 361, 551
Hpy166II GTNNAC 3 cut(s) 17, 63, 86
Hpy188I TCNGA 4 cut(s) 69, 431, 568, 829
Hpy188III TCNNGA 6 cut(s) 272, 421, 593, 701, 734, 887
Hpy8I GTNNAC 3 cut(s) 17, 63, 86
Hpy99I CGWCG 2 cut(s) 15, 410
HpyAV CCTTC 3 cut(s) 294, 299, 945
HpyCH4III ACNGT 3 cut(s) 349, 731, 874
HpyCH4IV ACGT 1 cut(s) 417
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 181, 680, 746, 901
HpyF3I CTNAG 3 cut(s) 66, 565, 945
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 9 cut(s) 58, 113, 339, 385, 502, 533, 806, 853, 967
HspAI GCGC 1 cut(s) 173
Kzo9I GATC 8 cut(s) 114, 154, 332, 559, 639, 691, 805, 824
LpnPI CCDG 8 cut(s) 113, 230, 281, 353, 406, 660, 714, 915
Lsp1109I GCAGC 4 cut(s) 58, 192, 422, 505
LweI GCATC 5 cut(s) 37, 385, 407, 712, 727
MaeI CTAG 3 cut(s) 50, 192, 272
MaeII ACGT 1 cut(s) 417
MalI GATC 8 cut(s) 116, 156, 334, 561, 641, 693, 807, 826
MboI GATC 8 cut(s) 114, 154, 332, 559, 639, 691, 805, 824
MfeI CAATTG 1 cut(s) 741
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 7 cut(s) 287, 487, 504, 576, 704, 741, 756
MmeI TCCRAC 1 cut(s) 516
Mph1103I ATGCAT 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 588
MseI TTAA 5 cut(s) 138, 290, 635, 645, 900
MspCI CTTAAG 1 cut(s) 899
MspI CCGG 1 cut(s) 100
MunI CAATTG 1 cut(s) 741
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 5 cut(s) 55, 181, 680, 746, 901
NdeII GATC 8 cut(s) 114, 154, 332, 559, 639, 691, 805, 824
NlaIII CATG 9 cut(s) 58, 113, 339, 385, 502, 533, 806, 853, 967
NsiI ATGCAT 1 cut(s) 400
PceI AGGCCT 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 1 cut(s) 877
PflMI CCANNNNNTGG 2 cut(s) 110, 707
PkrI GCNGC 4 cut(s) 48, 207, 412, 520
PsiI TTATAA 1 cut(s) 546
PspFI CCCAGC 1 cut(s) 929
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 3 cut(s) 619, 717, 848
RsaNI GTAC 3 cut(s) 618, 716, 847
SaqAI TTAA 5 cut(s) 138, 290, 635, 645, 900
SatI GCNGC 4 cut(s) 47, 206, 411, 519
Sau3AI GATC 8 cut(s) 114, 154, 332, 559, 639, 691, 805, 824
SduI GDGCHC 1 cut(s) 19
SfaNI GCATC 5 cut(s) 37, 385, 407, 712, 727
SmlI CTYRAG 1 cut(s) 899
SmoI CTYRAG 1 cut(s) 899
Sse9I AATT 7 cut(s) 287, 487, 504, 576, 704, 741, 756
SseBI AGGCCT 1 cut(s) 468
SsiI CCGC 2 cut(s) 58, 147
SspMI CTAG 3 cut(s) 50, 192, 272
StuI AGGCCT 1 cut(s) 468
StyI CCWWGG 1 cut(s) 837
TaaI ACNGT 3 cut(s) 349, 731, 874
TaiI ACGT 1 cut(s) 420
TaqI TCGA 3 cut(s) 510, 582, 735
TasI AATT 7 cut(s) 287, 487, 504, 576, 704, 741, 756
TatI WGTACW 2 cut(s) 715, 846
TfiI GAWTC 1 cut(s) 877
Tru1I TTAA 5 cut(s) 138, 290, 635, 645, 900
Tru9I TTAA 5 cut(s) 138, 290, 635, 645, 900
TscAI CASTG 2 cut(s) 157, 333
TseI GCWGC 4 cut(s) 46, 205, 410, 518
TspDTI ATGAA 7 cut(s) 98, 398, 641, 866, 932, 952, 1005
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 2 cut(s) 157, 333
Van91I CCANNNNNTGG 2 cut(s) 110, 707
Vha464I CTTAAG 1 cut(s) 899
VneI GTGCAC 1 cut(s) 15
XapI RAATTY 1 cut(s) 704
XbaI TCTAGA 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 3 cut(s) 50, 192, 272
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.