Prupe.1G356600_v2.0.a1

helicase activity

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
33043902 .. 33044752
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G356600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 237 bp
ATGAATGAAGACAATGTAAAGCCAACGATGCTGGGTTCAATAGCATCCCAGTATTATCTTAGTAGCTACATGACTGTATCAATGTTTGGTTCGAACATAGGATCAGATACATCGCTTGAAATCGTCTTGCATATCCTATCTGCTGCTTCTGAATATAATGAACTTCCTGTGCGGCATAACGAGGCACATTTCTTGCAGTTCGAATTACCAATCAGTGATAACACATCACAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.69

Weight (kDa)

4.43

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 109
AgsI TTSAA 2 cut(s) 39, 119
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
AlwI GGATC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 143
AsuII TTCGAA 2 cut(s) 92, 201
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 130
BisI GCNGC 2 cut(s) 144, 173
BlsI GCNGC 2 cut(s) 145, 174
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 18, 53
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 15
Bpu14I TTCGAA 2 cut(s) 92, 201
Bse1I ACTGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 130
BseYI CCCAGC 1 cut(s) 31
Bsp119I TTCGAA 2 cut(s) 92, 201
Bsp143I GATC 1 cut(s) 101
BspACI CCGC 1 cut(s) 172
BspPI GGATC 1 cut(s) 109
BspT104I TTCGAA 2 cut(s) 92, 201
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 76
BstBI TTCGAA 2 cut(s) 92, 201
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 44
BstKTI GATC 1 cut(s) 104
BstMBI GATC 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 220
CviAII CATG 1 cut(s) 70
CviJI RGCY 2 cut(s) 22, 66
CviKI_1 RGCY 2 cut(s) 22, 66
DdeI CTNAG 1 cut(s) 59
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
FaeI CATG 1 cut(s) 73
FaiI YATR 5 cut(s) 71, 98, 132, 156, 177
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 144, 173
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 144, 173
GluI GCNGC 2 cut(s) 144, 173
GsaI CCCAGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 106, 151
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 130, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 1 cut(s) 73
Kzo9I GATC 1 cut(s) 101
LpnPI CCDG 3 cut(s) 17, 62, 180
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 2 cut(s) 18, 53
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 1 cut(s) 20
MluCI AATT 1 cut(s) 203
MnlI CCTC 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 28
NdeII GATC 1 cut(s) 101
NlaIII CATG 1 cut(s) 73
NspV TTCGAA 2 cut(s) 92, 201
PkrI GCNGC 2 cut(s) 145, 174
PspFI CCCAGC 1 cut(s) 31
SatI GCNGC 2 cut(s) 144, 173
Sau3AI GATC 1 cut(s) 101
SetI ASST 1 cut(s) 68
SfaNI GCATC 2 cut(s) 18, 53
SfuI TTCGAA 2 cut(s) 92, 201
SgeI CNNG 8 cut(s) 44, 61, 82, 128, 139, 179, 193, 205
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 172
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 2 cut(s) 92, 201
TasI AATT 1 cut(s) 203
TauI GCSGC 1 cut(s) 175
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 17, 21, 174
TspRI CASTG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.