Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

33528701 .. 33531158

Gene Structure 2458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G365200.1_v2.0.a1.CDS.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAAAAGGAAAACTGGAATTCTCCTCTCCAATGACAGGATTTTCAATCTCGGTCCATACACGTTGGATTTCACATCAAGTGGTCGCCATATGGCAGTCTGCGGACTCAAGGGCCATGGCTATTGTTTGAATGTGAAATATAATAGTCAAACAATAGAAATGATACTAAGTAGTGATACAGTTTTGCTAACTGATGATGTTCAGGTTAGGGAAACAGTATGTGATGTGGTGTTCCTACACAATGAGTCGTTCTTTGCTGCAGTCCAGAAAAATATGGCTAACGTTCTCATTCCTGGCAGTTATCCATATATTTATAACCGGGATGGCACTGAACTTCATTGCTTAAAGGAACATGGTGCAGTTTTAAGGCTTCAATTTCTGAAAACCCACTTCCTCTTGGCTTCAATAAACAATTTTGGGCAGCTTCATTATCAAGATGTAACAATGGGTGAGATGGTAGGTAGTTACAGAACTGGCTTAGGCCGTGCTGATGTGATGCAGGGCCCCCCTCTCGGCAATGCATTCCACCCGAATGGCCATCTCATGGCCACAGCTGGAAAAGAGAATAAAATTAAGCTTTGGGACTTGAGGAAACTTGAGGATGAAGCACTCCAAACTTTACCGGGGCAGCCAAAGACTTTGGATTTCAGTCGGAAGGTTCTTCTAGCTTGTCTGGGCTGTGGATCATCTGTACAAATCCTGAGAGATTTGCACGGGACTCAGAACTACAAGACATATATGAACCATCGAATGGTTAAAGGTTACCAAATAGAAAAGTTGTTGTTTCGGCCGTGTGAAGATGTTCTAGACATAGGGCACTCCATGGGTTGGTCCAGTATTCTGATTCCTGGTTGTGGGGAACCGAACTTTGATTCCTGGGTGGCAAATCCATTTGAAACATCTAAACATAGAAGTGAGAGGGAAGTGCACTCTCTGCTTGATAAGCTGCCGCCTGAGACAATTATGTTGGATCCCGCAAAGATCGGCACAAGGAAGAAAGAGAAACCGACAAAGCAAGAGAAAGAGGTTGAGATTGAAGCTGTCAAGGGCACTGTCCTAAAGAAGAAAACCAAGGGGAGGAATAAGCCGAGTAAGAGGACGACGACGACGGAGGAGATCATTGCAAATGCCAAGAGGCCTTTCTTGGAGCAACAAATGAAGGAGGAAGAACAACTGGCTAGAAAGAAGCAGAAAACAATTGAGCAAGTGGAGCTACCAACATCTTCACAGCGGTTTGCCCACACCAAAGCGACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

420

Amino Acids

47.31

Weight (kDa)

9.11

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AccB7I	CCANNNNNTGG	3 cut(s)	544, 751, 828
AciI	CCGC	4 cut(s)	102, 950, 975, 1231
AclI	AACGTT	1 cut(s)	282
AclWI	GGATC	3 cut(s)	691, 965, 978
AcoI	YGGCCR	3 cut(s)	535, 546, 788
AcsI	RAATTY	1 cut(s)	18
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	7 cut(s)	36, 512, 544, 751, 828, 854, 1077
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	6 cut(s)	46, 130, 374, 405, 896, 1037
AjnI	CCWGG	3 cut(s)	292, 847, 875
AjuI	GAANNNNNNNTTGG	2 cut(s)	1124, 1156
AloI	GAACNNNNNNTCC	2 cut(s)	857, 889
AluBI	AGCT	7 cut(s)	424, 554, 577, 668, 946, 1040, 1213
AluI	AGCT	7 cut(s)	424, 554, 577, 668, 946, 1040, 1213
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	1 cut(s)	950
Alw44I	GTGCAC	1 cut(s)	926
AlwI	GGATC	3 cut(s)	691, 965, 978
AoxI	GGCC	7 cut(s)	112, 481, 502, 535, 546, 788, 1136
ApaI	GGGCCC	1 cut(s)	506
ApaLI	GTGCAC	1 cut(s)	926
ApeKI	GCWGC	4 cut(s)	257, 421, 628, 946
ApoI	RAATTY	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	801
AspS9I	GGNCC	5 cut(s)	53, 112, 502, 503, 831
AsuC2I	CCSGG	2 cut(s)	320, 624
AsuHPI	GGTGA	1 cut(s)	461
AvaII	GGWCC	2 cut(s)	53, 831
BaeGI	GKGCMC	4 cut(s)	506, 819, 930, 1052
BalI	TGGCCA	2 cut(s)	537, 548
BamHI	GGATCC	1 cut(s)	970
BanII	GRGCYC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	4 cut(s)	244, 433, 640, 933
BccI	CCATC	4 cut(s)	317, 448, 546, 753
BceAI	ACGGC	2 cut(s)	468, 775
BciT130I	CCWGG	3 cut(s)	294, 849, 877
BcnI	CCSGG	2 cut(s)	320, 624
BcoDI	GTCTC	1 cut(s)	950
BfaI	CTAG	3 cut(s)	665, 806, 1179
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	5 cut(s)	258, 422, 629, 947, 950
BlsI	GCNGC	5 cut(s)	259, 423, 630, 948, 951
Bme1390I	CCNGG	5 cut(s)	294, 320, 624, 849, 877
Bme18I	GGWCC	2 cut(s)	53, 831
BmgT120I	GGNCC	5 cut(s)	53, 112, 502, 503, 831
BmiI	GGNNCC	4 cut(s)	504, 505, 861, 972
BmrFI	CCNGG	5 cut(s)	294, 320, 624, 849, 877
BmsI	GCATC	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	3 cut(s)	92, 607, 617
BpuMI	CCSGG	2 cut(s)	320, 624
BsaJI	CCNNGG	5 cut(s)	115, 623, 822, 876, 1071
Bsc4I	CCNNNNNNNGG	7 cut(s)	36, 512, 544, 751, 828, 854, 1077
Bse1I	ACTGG	4 cut(s)	19, 478, 834, 1179
Bse3DI	GCAATG	3 cut(s)	337, 523, 1119
BseBI	CCWGG	3 cut(s)	294, 849, 877
BseDI	CCNNGG	5 cut(s)	115, 623, 822, 876, 1071
BseGI	GGATG	2 cut(s)	328, 607
BseLI	CCNNNNNNNGG	7 cut(s)	36, 512, 544, 751, 828, 854, 1077
BseMI	GCAATG	3 cut(s)	337, 523, 1119
BseMII	CTCAG	3 cut(s)	692, 734, 945
BseNI	ACTGG	4 cut(s)	19, 478, 834, 1179
BseRI	GAGGAG	2 cut(s)	14, 1127
BseSI	GKGCMC	4 cut(s)	506, 819, 930, 1052
BseX3I	CGGCCG	1 cut(s)	788
BseXI	GCAGC	4 cut(s)	244, 433, 640, 933
BsgI	GTGCAG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	791
BshFI	GGCC	7 cut(s)	114, 483, 504, 537, 548, 790, 1138
BsiEI	CGRYCG	1 cut(s)	791
BsiHKAI	GWGCWC	1 cut(s)	930
BsiSI	CCGG	2 cut(s)	319, 623
BslFI	GGGAC	2 cut(s)	596, 730
BslI	CCNNNNNNNGG	7 cut(s)	36, 512, 544, 751, 828, 854, 1077
BsmAI	GTCTC	1 cut(s)	950
BsmFI	GGGAC	2 cut(s)	596, 730
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	7 cut(s)	114, 483, 504, 537, 548, 790, 1138
Bsp120I	GGGCCC	1 cut(s)	502
Bsp1286I	GDGCHC	4 cut(s)	506, 819, 930, 1052
Bsp1407I	TGTACA	1 cut(s)	691
Bsp143I	GATC	4 cut(s)	683, 970, 981, 1116
Bsp19I	CCATGG	2 cut(s)	115, 822
BspACI	CCGC	4 cut(s)	102, 950, 975, 1231
BspANI	GGCC	7 cut(s)	114, 483, 504, 537, 548, 790, 1138
BspCNI	CTCAG	3 cut(s)	693, 733, 946
BspLI	GGNNCC	4 cut(s)	504, 505, 861, 972
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	3 cut(s)	691, 965, 978
BsrDI	GCAATG	3 cut(s)	337, 523, 1119
BsrGI	TGTACA	1 cut(s)	691
BsrI	ACTGG	4 cut(s)	19, 478, 834, 1179
BssECI	CCNNGG	5 cut(s)	115, 623, 822, 876, 1071
BssMI	GATC	4 cut(s)	683, 970, 981, 1116
BssT1I	CCWWGG	3 cut(s)	115, 822, 1071
Bst2UI	CCWGG	3 cut(s)	294, 849, 877
Bst4CI	ACNGT	3 cut(s)	181, 217, 1054
BstAPI	GCANNNNNTGC	1 cut(s)	934
BstAUI	TGTACA	1 cut(s)	691
BstDEI	CTNAG	5 cut(s)	167, 478, 701, 720, 954
BstDSI	CCRYGG	2 cut(s)	115, 822
BstEII	GGTNACC	1 cut(s)	761
BstF5I	GGATG	2 cut(s)	328, 607
BstKTI	GATC	4 cut(s)	686, 973, 984, 1119
BstMAI	GTCTC	1 cut(s)	950
BstMBI	GATC	4 cut(s)	683, 970, 981, 1116
BstMCI	CGRYCG	1 cut(s)	791
BstMWI	GCNNNNNNNGC	3 cut(s)	934, 943, 1210
BstNI	CCWGG	3 cut(s)	294, 849, 877
BstPI	GGTNACC	1 cut(s)	761
BstSCI	CCNGG	5 cut(s)	292, 318, 622, 847, 875
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	4 cut(s)	506, 819, 930, 1052
BstV1I	GCAGC	4 cut(s)	244, 433, 640, 933
BstX2I	RGATCY	1 cut(s)	970
BstXI	CCANNNNNNTGG	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	970
BstZI	CGGCCG	1 cut(s)	788
BsuRI	GGCC	7 cut(s)	114, 483, 504, 537, 548, 790, 1138
BtgI	CCRYGG	2 cut(s)	115, 822
BtsCI	GGATG	2 cut(s)	328, 607
BtsIMutI	CAGTG	2 cut(s)	327, 1050
Cfr13I	GGNCC	5 cut(s)	53, 112, 502, 503, 831
Csp6I	GTAC	1 cut(s)	692
CviAII	CATG	5 cut(s)	116, 353, 544, 823, 1257
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	5 cut(s)	167, 478, 701, 720, 954
DpnI	GATC	4 cut(s)	685, 972, 983, 1118
DpnII	GATC	4 cut(s)	683, 970, 981, 1116
EaeI	YGGCCR	3 cut(s)	535, 546, 788
EagI	CGGCCG	1 cut(s)	788
EclXI	CGGCCG	1 cut(s)	788
Eco130I	CCWWGG	3 cut(s)	115, 822, 1071
Eco147I	AGGCCT	1 cut(s)	1138
Eco24I	GRGCYC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	53, 831
Eco52I	CGGCCG	1 cut(s)	788
Eco91I	GGTNACC	1 cut(s)	761
EcoO109I	RGGNCCY	2 cut(s)	502, 503
EcoO65I	GGTNACC	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	3 cut(s)	292, 847, 875
EcoT14I	CCWWGG	3 cut(s)	115, 822, 1071
EcoT22I	ATGCAT	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	506
ErhI	CCWWGG	3 cut(s)	115, 822, 1071
FaeI	CATG	5 cut(s)	119, 356, 547, 826, 1260
FaqI	GGGAC	2 cut(s)	596, 730
FatI	CATG	5 cut(s)	115, 352, 543, 822, 1256
FauI	CCCGC	1 cut(s)	982
FauNDI	CATATG	1 cut(s)	90
Fnu4HI	GCNGC	5 cut(s)	258, 422, 629, 947, 950
FokI	GGATG	2 cut(s)	335, 614
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	5 cut(s)	258, 422, 629, 947, 950
FspBI	CTAG	3 cut(s)	665, 806, 1179
GluI	GCNGC	5 cut(s)	258, 422, 629, 947, 950
HaeIII	GGCC	7 cut(s)	114, 483, 504, 537, 548, 790, 1138
HapII	CCGG	2 cut(s)	319, 623
Hin1II	CATG	5 cut(s)	119, 356, 547, 826, 1260
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	5 cut(s)	105, 245, 718, 844, 872
HpaII	CCGG	2 cut(s)	319, 623
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	928
Hpy188I	TCNGA	4 cut(s)	381, 654, 723, 843
Hpy188III	TCNNGA	4 cut(s)	265, 434, 700, 806
Hpy8I	GTNNAC	1 cut(s)	928
Hpy99I	CGWCG	3 cut(s)	1105, 1108, 1111
HpyAV	CCTTC	2 cut(s)	649, 1153
HpyCH4III	ACNGT	3 cut(s)	181, 217, 1054
HpyCH4IV	ACGT	2 cut(s)	62, 282
HpyCH4V	TGCA	8 cut(s)	260, 359, 499, 521, 712, 928, 1124, 1256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	934, 943, 1210
HpyF3I	CTNAG	5 cut(s)	167, 478, 701, 720, 954
HpySE526I	ACGT	2 cut(s)	62, 282
Hsp92II	CATG	5 cut(s)	119, 356, 547, 826, 1260
Kzo9I	GATC	4 cut(s)	683, 970, 981, 1116
LmnI	GCTCC	2 cut(s)	1147, 1210
Lsp1109I	GCAGC	4 cut(s)	244, 433, 640, 933
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	3 cut(s)	665, 806, 1179
MaeII	ACGT	2 cut(s)	62, 282
MaeIII	GTNAC	3 cut(s)	439, 464, 761
MalI	GATC	4 cut(s)	685, 972, 983, 1118
MboI	GATC	4 cut(s)	683, 970, 981, 1116
MboII	GAAGA	6 cut(s)	653, 809, 1006, 1075, 1178, 1215
MfeI	CAATTG	1 cut(s)	1197
MflI	RGATCY	1 cut(s)	970
MhlI	GDGCHC	4 cut(s)	506, 819, 930, 1052
MlsI	TGGCCA	2 cut(s)	537, 548
MluCI	AATT	6 cut(s)	18, 374, 412, 570, 960, 1197
MluNI	TGGCCA	2 cut(s)	537, 548
MlyI	GAGTC	3 cut(s)	99, 254, 712
MmeI	TCCRAC	3 cut(s)	45, 632, 948
Mox20I	TGGCCA	2 cut(s)	537, 548
Mph1103I	ATGCAT	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	801
MscI	TGGCCA	2 cut(s)	537, 548
MseI	TTAA	4 cut(s)	344, 365, 573, 756
MslI	CAYNNNNRTG	2 cut(s)	531, 912
Msp20I	TGGCCA	2 cut(s)	537, 548
MspA1I	CMGCKG	2 cut(s)	554, 1231
MspI	CCGG	2 cut(s)	319, 623
MspR9I	CCNGG	5 cut(s)	294, 320, 624, 849, 877
MunI	CAATTG	1 cut(s)	1197
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	3 cut(s)	294, 849, 877
MwoI	GCNNNNNNNGC	3 cut(s)	934, 943, 1210
NciI	CCSGG	2 cut(s)	320, 624
NcoI	CCATGG	2 cut(s)	115, 822
NdeI	CATATG	1 cut(s)	90
NdeII	GATC	4 cut(s)	683, 970, 981, 1116
NlaIII	CATG	5 cut(s)	119, 356, 547, 826, 1260
NlaIV	GGNNCC	4 cut(s)	504, 505, 861, 972
NmeAIII	GCCGAG	2 cut(s)	492, 1113
NsiI	ATGCAT	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	1138
PctI	GAATGC	1 cut(s)	521
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	844, 872
PflMI	CCANNNNNTGG	3 cut(s)	544, 751, 828
PkrI	GCNGC	5 cut(s)	259, 423, 630, 948, 951
PleI	GAGTC	3 cut(s)	99, 253, 712
PpsI	GAGTC	3 cut(s)	99, 253, 712
PsiI	TTATAA	1 cut(s)	315
Psp1406I	AACGTT	1 cut(s)	282
Psp6I	CCWGG	3 cut(s)	292, 847, 875
PspEI	GGTNACC	1 cut(s)	761
PspGI	CCWGG	3 cut(s)	292, 847, 875
PspN4I	GGNNCC	4 cut(s)	504, 505, 861, 972
PspOMI	GGGCCC	1 cut(s)	502
PspPI	GGNCC	5 cut(s)	53, 112, 502, 503, 831
PstI	CTGCAG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	970
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
RseI	CAYNNNNRTG	2 cut(s)	531, 912
SaqAI	TTAA	4 cut(s)	344, 365, 573, 756
SatI	GCNGC	5 cut(s)	258, 422, 629, 947, 950
Sau3AI	GATC	4 cut(s)	683, 970, 981, 1116
Sau96I	GGNCC	5 cut(s)	53, 112, 502, 503, 831
SchI	GAGTC	3 cut(s)	99, 254, 712
ScrFI	CCNGG	5 cut(s)	294, 320, 624, 849, 877
SduI	GDGCHC	4 cut(s)	506, 819, 930, 1052
SfaNI	GCATC	1 cut(s)	486
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	2 cut(s)	53, 831
SmiMI	CAYNNNNRTG	2 cut(s)	531, 912
SmlI	CTYRAG	3 cut(s)	107, 586, 596
SmoI	CTYRAG	3 cut(s)	107, 586, 596
Sse9I	AATT	6 cut(s)	18, 374, 412, 570, 960, 1197
SseBI	AGGCCT	1 cut(s)	1138
SsiI	CCGC	4 cut(s)	102, 950, 975, 1231
SspMI	CTAG	3 cut(s)	665, 806, 1179
StuI	AGGCCT	1 cut(s)	1138
StyD4I	CCNGG	5 cut(s)	292, 318, 622, 847, 875
StyI	CCWWGG	3 cut(s)	115, 822, 1071
TaaI	ACNGT	3 cut(s)	181, 217, 1054
TaiI	ACGT	2 cut(s)	65, 285
TaqI	TCGA	1 cut(s)	748
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	6 cut(s)	18, 374, 412, 570, 960, 1197
TatI	WGTACW	1 cut(s)	691
TauI	GCSGC	1 cut(s)	952
TfiI	GAWTC	2 cut(s)	844, 872
Tru1I	TTAA	4 cut(s)	344, 365, 573, 756
Tru9I	TTAA	4 cut(s)	344, 365, 573, 756
TscAI	CASTG	2 cut(s)	334, 1057
TseI	GCWGC	4 cut(s)	257, 421, 628, 946
TspDTI	ATGAA	6 cut(s)	17, 326, 416, 618, 755, 1172
TspGWI	ACGGA	1 cut(s)	1124
TspRI	CASTG	2 cut(s)	334, 1057
Van91I	CCANNNNNTGG	3 cut(s)	544, 751, 828
VneI	GTGCAC	1 cut(s)	926
VpaK11BI	GGWCC	2 cut(s)	53, 831
XapI	RAATTY	1 cut(s)	18
XbaI	TCTAGA	1 cut(s)	805
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	3 cut(s)	665, 806, 1179
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.