Prupe.1G373000_v2.0.a1

Thioredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
33932889 .. 33934999
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G373000.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 489 bp
ATGGCTGGAGAAAATCAAGTCATCGACTGCAACACTACTGACGCATGGGAAGAGCAGCTCCATAGGGGAAACGAGAACAAAAGACTGCTGGTGGTGGATTTCACGGCTTGGTCTTATGGACCCTGCCAGTTGATCGCCCCAATCTTGGCGGAGTTGGCTAAGAAGAACCCAGAAGTAACGTTCCTAAAGGTGTACGTGGATGAACTGAAGACTGTTTCTGAAAAGTGGGGTGTGGATGCAGTGCCTACCTTCCTCTTCCTCAAGGAAGGCAAGGTAGTGGACAAGGTTGTGGGTGCCAAGAAAGACGAGTTACGGACCAAAGTAGGGAAGCATGCCGCTGTTACCTCCCCCACTGATGATTCCTGTCCCACCAGTGATACCTGCCCCACCGGTGCTACTGCTATTGCTACTGCTACTTCTTCTGAGAGTGCTACTGCTACTGCTACTTCTACTGCTACTTCTACTGCTACTTCTACAGATACTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

163

Amino Acids

17.21

Weight (kDa)

4.92

Isoelectric Point (pI)

17.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 293
AciI CCGC 2 cut(s) 149, 336
AclI AACGTT 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 145, 324
AgeI ACCGGT 1 cut(s) 389
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 482
ApeKI GCWGC 1 cut(s) 55
AsiGI ACCGGT 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 119, 315
AvaII GGWCC 2 cut(s) 119, 315
BanI GGYRCC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 2 cut(s) 56, 336
BlsI GCNGC 2 cut(s) 57, 337
Bme18I GGWCC 2 cut(s) 119, 315
BmgT120I GGNCC 2 cut(s) 119, 315
BmiI GGNNCC 2 cut(s) 121, 295
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 324
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 127, 372
BseGI GGATG 2 cut(s) 205, 241
BseLI CCNNNNNNNGG 2 cut(s) 145, 324
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 2 cut(s) 127, 372
BseXI GCAGC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 293
BshTI ACCGGT 1 cut(s) 389
BsiSI CCGG 1 cut(s) 390
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 145, 324
BsmFI GGGAC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 2 cut(s) 149, 336
BspCNI CTCAG 1 cut(s) 415
BspLI GGNNCC 2 cut(s) 121, 295
BspMI ACCTGC 1 cut(s) 389
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 2 cut(s) 127, 372
BssAI RCCGGY 1 cut(s) 389
BssMI GATC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 45, 260
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 159, 423
BstF5I GGATG 2 cut(s) 205, 241
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 474
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 215
BtsCI GGATG 2 cut(s) 205, 241
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 3 cut(s) 246, 351, 379
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 1 cut(s) 333
CaiI CAGNNNCTG 1 cut(s) 482
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 119, 315
CseI GACGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 193
CspAI ACCGGT 1 cut(s) 389
CviAII CATG 2 cut(s) 45, 332
CviJI RGCY 4 cut(s) 5, 58, 107, 158
CviKI_1 RGCY 4 cut(s) 5, 58, 107, 158
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 159, 423
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eam1104I CTCTTC 2 cut(s) 45, 260
EarI CTCTTC 2 cut(s) 45, 260
EciI GGCGGA 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 119, 315
Eco57I CTGAAG 1 cut(s) 227
FaeI CATG 2 cut(s) 48, 335
FaiI YATR 4 cut(s) 46, 63, 117, 333
FaqI GGGAC 1 cut(s) 351
FatI CATG 2 cut(s) 44, 331
Fnu4HI GCNGC 2 cut(s) 56, 336
FokI GGATG 2 cut(s) 212, 248
Fsp4HI GCNGC 2 cut(s) 56, 336
GluI GCNGC 2 cut(s) 56, 336
GsuI CTGGAG 1 cut(s) 27
HapII CCGG 1 cut(s) 390
HgaI GACGC 1 cut(s) 50
Hin1II CATG 2 cut(s) 48, 335
HinfI GANTC 1 cut(s) 359
HpaII CCGG 1 cut(s) 390
Hpy166II GTNNAC 2 cut(s) 193, 280
Hpy188I TCNGA 2 cut(s) 220, 424
Hpy8I GTNNAC 2 cut(s) 193, 280
HpyAV CCTTC 2 cut(s) 259, 260
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 2 cut(s) 179, 195
HpyCH4V TGCA 2 cut(s) 30, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 159, 423
HpySE526I ACGT 2 cut(s) 179, 195
Hsp92II CATG 2 cut(s) 48, 335
Kzo9I GATC 1 cut(s) 132
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 8 cut(s) 74, 136, 140, 183, 376, 385, 394, 403
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 226
MaeII ACGT 2 cut(s) 179, 195
MaeIII GTNAC 3 cut(s) 175, 309, 340
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 5 cut(s) 62, 175, 220, 247, 411
MnlI CCTC 3 cut(s) 263, 269, 355
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 132
NlaIII CATG 2 cut(s) 48, 335
NlaIV GGNNCC 2 cut(s) 121, 295
NspI RCATGY 1 cut(s) 335
PaeI GCATGC 1 cut(s) 335
PciSI GCTCTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 359
PinAI ACCGGT 1 cut(s) 389
PkrI GCNGC 2 cut(s) 57, 337
Ppu21I YACGTR 1 cut(s) 196
Psp1406I AACGTT 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 121, 295
PspPI GGNCC 2 cut(s) 119, 315
PstNI CAGNNNCTG 1 cut(s) 482
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 45
SatI GCNGC 2 cut(s) 56, 336
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 2 cut(s) 119, 315
SetI ASST 9 cut(s) 60, 182, 192, 198, 251, 276, 288, 347, 383
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 474
SgrAI CRCCGGYG 1 cut(s) 389
SinI GGWCC 2 cut(s) 119, 315
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SphI GCATGC 1 cut(s) 335
SsiI CCGC 2 cut(s) 149, 336
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 2 cut(s) 182, 198
TaqI TCGA 1 cut(s) 24
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 1 cut(s) 359
TscAI CASTG 3 cut(s) 246, 358, 379
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 216
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 3 cut(s) 246, 358, 379
VpaK11BI GGWCC 2 cut(s) 119, 315
XceI RCATGY 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.