Prupe.1G373100_v2.0.a1

Thioredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
33939530 .. 33941346
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G373100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 504 bp
ATGGCTGAAGAAAATCAAGTCATCGACTGCCACACTACTGAGGCATGGGAAGAGCAGCTCCATAAGGGAAACGAGAACAAGAAACTGCTGGTGGTGGATTTCACGGCTTGGTCTTATGGACCTTGCCAGTTGATCGCCCCAATCTTGGCGGAGTTGGCTAAGAAGAACCCAAAAGTAACGTTCCTAAAAGTGGACGTGGATGAACTGAAGACTGTTTCTGAAAAGTGGGGTGTGGATGCAGTGCCTACCTTCCTCTTCCTCAAGGAAGGCAAGGTAGTGGACAAGGTTGTGGGTGCCAAGAAAGACGAGTTACGGACCAAAGTAGAGAAGCATGACGCTGCTGCCTCCCGCGTTGATGATACCAGCCGCACCGGTGCTACTGCTAAGGCTACTGCTACTGCTTGTAATAGTGCTACTGCTACTGCTACCGCTACTGCTACTAGTACTACTACTAGTACTGCTGCTGCTGCCACTCCTACTGCTACTTCTACAGATACTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

168

Amino Acids

17.74

Weight (kDa)

5.65

Isoelectric Point (pI)

13.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccII CGCG 1 cut(s) 351
AciI CCGC 4 cut(s) 149, 349, 367, 429
AclI AACGTT 1 cut(s) 179
AcuI CTGAAG 2 cut(s) 27, 227
AfaI GTAC 2 cut(s) 445, 457
AfiI CCNNNNNNNGG 2 cut(s) 145, 190
AgeI ACCGGT 1 cut(s) 371
AhlI ACTAGT 2 cut(s) 440, 452
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 497
ApeKI GCWGC 6 cut(s) 55, 338, 341, 461, 464, 467
AsiGI ACCGGT 1 cut(s) 371
AspS9I GGNCC 2 cut(s) 119, 315
AvaII GGWCC 2 cut(s) 119, 315
BanI GGYRCC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 6 cut(s) 67, 325, 328, 448, 451, 454
BceAI ACGGC 1 cut(s) 120
BcuI ACTAGT 2 cut(s) 440, 452
BfaI CTAG 2 cut(s) 441, 453
BfmI CTRYAG 1 cut(s) 489
BisI GCNGC 7 cut(s) 56, 339, 342, 367, 462, 465, 468
BlsI GCNGC 7 cut(s) 57, 340, 343, 368, 463, 466, 469
BmcAI AGTACT 2 cut(s) 445, 457
Bme18I GGWCC 2 cut(s) 119, 315
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 119, 315
BmiI GGNNCC 1 cut(s) 295
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 190
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 205, 241
BseLI CCNNNNNNNGG 2 cut(s) 145, 190
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 6 cut(s) 67, 325, 328, 448, 451, 454
Bsh1236I CGCG 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 293
BshTI ACCGGT 1 cut(s) 371
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 145, 190
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 4 cut(s) 149, 349, 367, 429
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 295
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 371
BssMI GATC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 45, 260
BstDEI CTNAG 3 cut(s) 39, 159, 384
BstF5I GGATG 2 cut(s) 205, 241
BstFNI CGCG 1 cut(s) 351
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 155, 467
BstSFI CTRYAG 1 cut(s) 489
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 6 cut(s) 67, 325, 328, 448, 451, 454
BstV2I GAAGAC 1 cut(s) 215
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 205, 241
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 497
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 2 cut(s) 119, 315
CseI GACGC 1 cut(s) 344
Csp6I GTAC 2 cut(s) 444, 456
CspAI ACCGGT 1 cut(s) 371
CviAII CATG 2 cut(s) 45, 332
CviJI RGCY 6 cut(s) 5, 58, 107, 158, 366, 389
CviKI_1 RGCY 6 cut(s) 5, 58, 107, 158, 366, 389
CviQI GTAC 2 cut(s) 444, 456
DdeI CTNAG 3 cut(s) 39, 159, 384
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eam1104I CTCTTC 2 cut(s) 45, 260
EarI CTCTTC 2 cut(s) 45, 260
EciI GGCGGA 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 119, 315
Eco57I CTGAAG 2 cut(s) 27, 227
FaeI CATG 2 cut(s) 48, 335
FaiI YATR 4 cut(s) 46, 63, 117, 333
FatI CATG 2 cut(s) 44, 331
FauI CCCGC 1 cut(s) 356
Fnu4HI GCNGC 7 cut(s) 56, 339, 342, 367, 462, 465, 468
FokI GGATG 2 cut(s) 212, 248
Fsp4HI GCNGC 7 cut(s) 56, 339, 342, 367, 462, 465, 468
FspBI CTAG 2 cut(s) 441, 453
GluI GCNGC 7 cut(s) 56, 339, 342, 367, 462, 465, 468
HapII CCGG 1 cut(s) 372
HgaI GACGC 1 cut(s) 344
Hin1II CATG 2 cut(s) 48, 335
HpaII CCGG 1 cut(s) 372
Hpy166II GTNNAC 2 cut(s) 193, 280
Hpy188I TCNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 193, 280
HpyAV CCTTC 2 cut(s) 259, 260
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 2 cut(s) 179, 195
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 467
HpyF3I CTNAG 3 cut(s) 39, 159, 384
HpySE526I ACGT 2 cut(s) 179, 195
Hsp92II CATG 2 cut(s) 48, 335
Kzo9I GATC 1 cut(s) 132
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 4 cut(s) 74, 140, 376, 385
Lsp1109I GCAGC 6 cut(s) 67, 325, 328, 448, 451, 454
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 441, 453
MaeII ACGT 2 cut(s) 179, 195
MaeIII GTNAC 2 cut(s) 175, 309
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 5 cut(s) 20, 62, 175, 220, 247
MnlI CCTC 4 cut(s) 34, 263, 269, 355
MspI CCGG 1 cut(s) 372
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 2 cut(s) 155, 467
NdeII GATC 1 cut(s) 132
NlaIII CATG 2 cut(s) 48, 335
NlaIV GGNNCC 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 45
PinAI ACCGGT 1 cut(s) 371
PkrI GCNGC 7 cut(s) 57, 340, 343, 368, 463, 466, 469
Psp1406I AACGTT 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 2 cut(s) 119, 315
PstNI CAGNNNCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 445, 457
RsaNI GTAC 2 cut(s) 444, 456
SapI GCTCTTC 1 cut(s) 45
SatI GCNGC 7 cut(s) 56, 339, 342, 367, 462, 465, 468
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 2 cut(s) 119, 315
ScaI AGTACT 2 cut(s) 445, 457
SetI ASST 7 cut(s) 60, 124, 182, 198, 251, 276, 288
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 489
SgrAI CRCCGGYG 1 cut(s) 371
SinI GGWCC 2 cut(s) 119, 315
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SpeI ACTAGT 2 cut(s) 440, 452
SsiI CCGC 4 cut(s) 149, 349, 367, 429
SspMI CTAG 2 cut(s) 441, 453
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 2 cut(s) 182, 198
TaqI TCGA 1 cut(s) 24
TatI WGTACW 2 cut(s) 443, 455
TauI GCSGC 1 cut(s) 369
TscAI CASTG 1 cut(s) 246
TseI GCWGC 6 cut(s) 55, 338, 341, 461, 464, 467
TspDTI ATGAA 1 cut(s) 216
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 2 cut(s) 119, 315
XspI CTAG 2 cut(s) 441, 453
ZrmI AGTACT 2 cut(s) 445, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.