Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

34815984 .. 34817102

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G390100.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAATATCCACTAGTCGGACACCCACATAAGCGGGTACAGGAAATATACTGGATGGAACGGAGATCTCATGTTCAGTCTGTTAGAAAGATATTTTCAAGTGAAGATATAGGTGTATCTTTGATGGGAAGTTTGAAGGTATATCACAATGCATGGCGTGAACTTTGTGAAGGCATGACAGCCGCTCGATCTCTGGACGAAGTCATAGAAGTACATGAATTGTATTTATTGACAATTCAGCGGCAGTGCTCAGTTTCATTGGACCTTTATTCTATACAGCTGACACTTAGTGGAGGAACAGTTTCTGCATTTAAGGCCAAATGTGAAATGGAAGTTGACCGTATTGAGAAACAGTTCGATGATTGCATTGCTTTCCTGCTCAGAGTGCTTTCTTTCAAGCTCAATGTGAGGCACTTTCCTCATCTAGCAGATTTGGTAACTAGGATAAACTACAATTACTTTTACATGTCAGATAGTGGAAACCTCAGGACTCTCCCCAGCTCTGAAAATGTTACTTCGAGACTGGGAAAGGCTTTTCTAGGCAGAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030587 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0090702 GO:0099120 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

185

Amino Acids

21.25

Weight (kDa)

7.73

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	185
AciI	CCGC	3 cut(s)	34, 183, 241
AdeI	CACNNNGTG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	39, 213
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	99, 136, 397
AhlI	ACTAGT	1 cut(s)	13
AluBI	AGCT	3 cut(s)	280, 400, 501
AluI	AGCT	3 cut(s)	280, 400, 501
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	315
Asp700I	GAANNNNTTC	2 cut(s)	301, 353
AspS9I	GGNCC	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	262
AxyI	CCTNAGG	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	251
BccI	CCATC	2 cut(s)	49, 118
BcoDI	GTCTC	1 cut(s)	514
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	4 cut(s)	14, 425, 441, 539
BglII	AGATCT	1 cut(s)	65
BisI	GCNGC	2 cut(s)	183, 242
BlsI	GCNGC	2 cut(s)	184, 243
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmrI	ACTGGG	1 cut(s)	533
BmuI	ACTGGG	1 cut(s)	533
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	56, 528
Bse21I	CCTNAGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	3 cut(s)	264, 394, 499
BseNI	ACTGG	2 cut(s)	56, 528
BseYI	CCCAGC	1 cut(s)	497
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	65, 188
BspACI	CCGC	3 cut(s)	34, 183, 241
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	3 cut(s)	263, 393, 498
BsrBI	CCGCTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	2 cut(s)	56, 528
BssMI	GATC	2 cut(s)	65, 188
Bst4CI	ACNGT	3 cut(s)	301, 341, 354
BstDEI	CTNAG	4 cut(s)	250, 287, 380, 485
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	68, 191
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	2 cut(s)	65, 188
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 385
BstNSI	RCATGY	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
Bsu36I	CCTNAGG	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	251
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	38, 212
CviAII	CATG	5 cut(s)	71, 153, 175, 215, 466
CviJI	RGCY	6 cut(s)	182, 280, 317, 400, 501, 533
CviKI_1	RGCY	6 cut(s)	182, 280, 317, 400, 501, 533
CviQI	GTAC	2 cut(s)	38, 212
DdeI	CTNAG	4 cut(s)	250, 287, 380, 485
DpnI	GATC	2 cut(s)	67, 190
DpnII	GATC	2 cut(s)	65, 188
DraIII	CACNNNGTG	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	262
Eco81I	CCTNAGG	1 cut(s)	485
EcoT22I	ATGCAT	1 cut(s)	154
FaeI	CATG	5 cut(s)	74, 156, 178, 218, 469
FatI	CATG	5 cut(s)	70, 152, 174, 214, 465
FauI	CCCGC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	183, 242
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	2 cut(s)	183, 242
FspBI	CTAG	4 cut(s)	14, 425, 441, 539
GluI	GCNGC	2 cut(s)	183, 242
GsaI	CCCAGC	1 cut(s)	501
HaeIII	GGCC	1 cut(s)	317
Hin1II	CATG	5 cut(s)	74, 156, 178, 218, 469
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	1 cut(s)	490
Hpy166II	GTNNAC	2 cut(s)	161, 337
Hpy188I	TCNGA	4 cut(s)	20, 383, 472, 505
Hpy188III	TCNNGA	3 cut(s)	194, 487, 519
Hpy8I	GTNNAC	2 cut(s)	161, 337
HpyAV	CCTTC	2 cut(s)	130, 164
HpyCH4III	ACNGT	3 cut(s)	301, 341, 354
HpyCH4V	TGCA	4 cut(s)	4, 152, 308, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 385
HpyF3I	CTNAG	4 cut(s)	250, 287, 380, 485
Hsp92II	CATG	5 cut(s)	74, 156, 178, 218, 469
Kzo9I	GATC	2 cut(s)	65, 188
LpnPI	CCDG	7 cut(s)	26, 37, 179, 389, 472, 509, 511
MaeI	CTAG	4 cut(s)	14, 425, 441, 539
MaeIII	GTNAC	2 cut(s)	436, 511
MalI	GATC	2 cut(s)	67, 190
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	2 cut(s)	65, 188
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	3 cut(s)	218, 234, 454
MlyI	GAGTC	1 cut(s)	484
MnlI	CCTC	4 cut(s)	287, 402, 429, 494
Mph1103I	ATGCAT	1 cut(s)	154
MroXI	GAANNNNTTC	2 cut(s)	301, 353
MseI	TTAA	1 cut(s)	312
MspA1I	CMGCKG	2 cut(s)	241, 280
MwoI	GCNNNNNNNGC	2 cut(s)	314, 385
NdeII	GATC	2 cut(s)	65, 188
NlaIII	CATG	5 cut(s)	74, 156, 178, 218, 469
NsiI	ATGCAT	1 cut(s)	154
NspI	RCATGY	1 cut(s)	469
PciI	ACATGT	1 cut(s)	465
PdmI	GAANNNNTTC	2 cut(s)	301, 353
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	184, 243
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PscI	ACATGT	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	497
PspPI	GGNCC	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	65
PsyI	GACNNNGTC	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	2 cut(s)	39, 213
RsaNI	GTAC	2 cut(s)	38, 212
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	2 cut(s)	183, 242
Sau3AI	GATC	2 cut(s)	65, 188
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	484
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	7 cut(s)	115, 141, 267, 282, 402, 486, 503
SinI	GGWCC	1 cut(s)	262
SpeI	ACTAGT	1 cut(s)	13
Sse9I	AATT	3 cut(s)	218, 234, 454
SsiI	CCGC	3 cut(s)	34, 183, 241
SspMI	CTAG	4 cut(s)	14, 425, 441, 539
TaaI	ACNGT	3 cut(s)	301, 341, 354
TaqI	TCGA	3 cut(s)	187, 357, 518
TasI	AATT	3 cut(s)	218, 234, 454
TatI	WGTACW	1 cut(s)	211
TauI	GCSGC	2 cut(s)	185, 244
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	231, 246
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	251
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	262
XceI	RCATGY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmnI	GAANNNNTTC	2 cut(s)	301, 353
XspI	CTAG	4 cut(s)	14, 425, 441, 539
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.