Prupe.1G394100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
35060869 .. 35061144
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G394100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 276 bp
ATGCCGGACACACACAAAGTAAGTCCAGAGGATGTGAGGAGAGCAGGAGCGGAAGCAGGAAAGAGGGCTCCTGGCCTCCGGAGCAGCCTTTACTTTGGTGCAACTTCCTGCATGGCCGTCACCGGCTTACTGTTTGCCGGCACCATTGGCTACTATACCCTTTATGTCAAGAAAAAGCCTGACCCCTCTGCACTAGATGTCGTTAGGGTCCGCCGTGACCTTGACGACCTTCGTCCCAGAAAGTCTCTTGTCAACAGCACCGACCCCGCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.89

Weight (kDa)

9.66

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccBSI CCGCTC 1 cut(s) 50
AccIII TCCGGA 1 cut(s) 78
AciI CCGC 3 cut(s) 50, 211, 267
AcoI YGGCCR 1 cut(s) 114
AjnI CCWGG 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 249
Aor13HI TCCGGA 1 cut(s) 78
AoxI GGCC 2 cut(s) 73, 114
ApeKI GCWGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 96
BceAI ACGGC 2 cut(s) 101, 198
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 194
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 3 cut(s) 69, 142, 209
BmrFI CCNGG 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 231
BsaWI WCCGGW 1 cut(s) 78
Bse118I RCCGGY 2 cut(s) 122, 137
BseAI TCCGGA 1 cut(s) 78
BseBI CCWGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 96
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 2 cut(s) 75, 116
BshNI GGYRCC 1 cut(s) 140
BsiSI CCGG 4 cut(s) 5, 79, 123, 138
BslFI GGGAC 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 2 cut(s) 75, 116
Bsp1286I GDGCHC 1 cut(s) 70
Bsp13I TCCGGA 1 cut(s) 78
BspACI CCGC 3 cut(s) 50, 211, 267
BspANI GGCC 2 cut(s) 75, 116
BspEI TCCGGA 1 cut(s) 78
BspLI GGNNCC 3 cut(s) 69, 142, 209
BspT107I GGYRCC 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 50
BsrFI RCCGGY 2 cut(s) 122, 137
BssAI RCCGGY 2 cut(s) 122, 137
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 139
BstF5I GGATG 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 81, 147
BstNI CCWGG 1 cut(s) 72
BstPAI GACNNNNGTC 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 96
BsuRI GGCC 2 cut(s) 75, 116
BtsCI GGATG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 139
Cfr10I RCCGGY 2 cut(s) 122, 137
Cfr13I GGNCC 1 cut(s) 208
CviAII CATG 2 cut(s) 112, 273
CviJI RGCY 7 cut(s) 68, 75, 87, 116, 126, 150, 178
CviKI_1 RGCY 7 cut(s) 68, 75, 87, 116, 126, 150, 178
EaeI YGGCCR 1 cut(s) 114
EciI GGCGGA 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 2 cut(s) 115, 276
FaiI YATR 4 cut(s) 113, 156, 165, 274
FaqI GGGAC 1 cut(s) 219
FatI CATG 2 cut(s) 111, 272
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 194
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 2 cut(s) 75, 116
HapII CCGG 4 cut(s) 5, 79, 123, 138
Hin1II CATG 2 cut(s) 115, 276
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HpaII CCGG 4 cut(s) 5, 79, 123, 138
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 253
Hpy188III TCNNGA 3 cut(s) 26, 79, 169
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 101, 111, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 147
Hsp92II CATG 2 cut(s) 115, 276
Kpn2I TCCGGA 1 cut(s) 78
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
LmnI GCTCC 3 cut(s) 47, 73, 81
Lsp1109I GCAGC 1 cut(s) 96
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 118, 215
MbiI CCGCTC 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 70
MnlI CCTC 5 cut(s) 22, 30, 57, 86, 196
MroI TCCGGA 1 cut(s) 78
MroNI GCCGGC 1 cut(s) 137
MspI CCGG 4 cut(s) 5, 79, 123, 138
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 81, 147
NaeI GCCGGC 1 cut(s) 139
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 2 cut(s) 115, 276
NlaIV GGNNCC 3 cut(s) 69, 142, 209
NmuCI GTSAC 2 cut(s) 118, 215
PdiI GCCGGC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 86
PshAI GACNNNNGTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 3 cut(s) 69, 142, 209
PspPI GGNCC 1 cut(s) 208
SatI GCNGC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 70
SetI ASST 2 cut(s) 222, 231
SinI GGWCC 1 cut(s) 208
SsiI CCGC 3 cut(s) 50, 211, 267
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 132
TseFI GTSAC 2 cut(s) 118, 215
TseI GCWGC 1 cut(s) 84
Tsp45I GTSAC 2 cut(s) 118, 215
VpaK11BI GGWCC 1 cut(s) 208
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.