Prupe.1G399100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
35286467 .. 35287099
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G399100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 216 bp
ATGAAGGGCCAGTCAGCTTTTTTCCCTATGCTTATTTTGCTTCTCTTGGTTTTCTCTCTTGGTAAAATGCAAGGAGAGGCACAAACATGCTCCTTCCCTACTATTCCAATGATTAACTGCTCAAAGCAATCCTGTATCTTAACCTGCATTCAACAATATGGCGGAAACATCAATGGCGGATGCATCGACAACGATACGTGTTGTTGCAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.69

Weight (kDa)

7.48

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
AciI CCGC 2 cut(s) 162, 177
AflIII ACRYGT 1 cut(s) 197
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AoxI GGCC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 7
BfuAI ACCTGC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 7
BmsI GCATC 2 cut(s) 170, 192
BsaAI YACGTR 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 10
BshFI GGCC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 1 cut(s) 9
BspACI CCGC 2 cut(s) 162, 177
BspANI GGCC 1 cut(s) 9
BspMI ACCTGC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 198
BstF5I GGATG 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 90
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 7
CviAII CATG 1 cut(s) 87
CviJI RGCY 2 cut(s) 9, 17
CviKI_1 RGCY 2 cut(s) 9, 17
EciI GGCGGA 2 cut(s) 177, 192
EcoT22I ATGCAT 1 cut(s) 185
FaeI CATG 1 cut(s) 90
FaiI YATR 3 cut(s) 29, 88, 159
FatI CATG 1 cut(s) 86
FokI GGATG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 9
Hin1II CATG 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 4 cut(s) 70, 147, 183, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 90
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 3 cut(s) 23, 145, 157
LweI GCATC 2 cut(s) 170, 192
MaeII ACGT 1 cut(s) 197
MluCI AATT 1 cut(s) 211
MnlI CCTC 1 cut(s) 70
Mph1103I ATGCAT 1 cut(s) 185
MseI TTAA 2 cut(s) 114, 140
MslI CAYNNNNRTG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 37
NlaIII CATG 1 cut(s) 90
NsiI ATGCAT 1 cut(s) 185
NspI RCATGY 1 cut(s) 90
PctI GAATGC 1 cut(s) 147
Ppu21I YACGTR 1 cut(s) 198
PspPI GGNCC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 85
SaqAI TTAA 2 cut(s) 114, 140
Sau96I GGNCC 1 cut(s) 7
SetI ASST 3 cut(s) 19, 146, 200
SfaNI GCATC 2 cut(s) 170, 192
SgeI CNNG 8 cut(s) 22, 58, 71, 83, 99, 144, 156, 210
SmiMI CAYNNNNRTG 1 cut(s) 85
Sse9I AATT 1 cut(s) 211
SsiI CCGC 2 cut(s) 162, 177
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 211
Tru1I TTAA 2 cut(s) 114, 140
Tru9I TTAA 2 cut(s) 114, 140
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.