Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

35346839 .. 35347516

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G400100.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGAAGATGGTTTCTTCCTTGTTCAAAACACTGTTTCTTCTTGGGTTAATTGCGTTGATCGCCTTTGCCGTGCAGACCGCTCAAGTTGGTGCAGATGCCAAGTTGAGGAAACTGAGCCATTTACCAAGTCCACCACCTCCTCCAAAGGGAGCCAGCCCAATTCATCAGCTACCACCTCCAAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

63

Amino Acids

6.58

Weight (kDa)

10.17

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	80
AciI	CCGC	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	105, 146
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	151
BmsI	GCATC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 146
BseLI	CCNNNNNNNGG	2 cut(s)	105, 146
BseMII	CTCAG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	129
BsgI	GTGCAG	2 cut(s)	92, 111
BslI	CCNNNNNNNGG	2 cut(s)	105, 146
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	80
BssMI	GATC	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	154
CviJI	RGCY	4 cut(s)	117, 152, 156, 169
CviKI_1	RGCY	4 cut(s)	117, 152, 156, 169
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	73, 92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	1 cut(s)	166
LweI	GCATC	1 cut(s)	85
MalI	GATC	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	1 cut(s)	57
MboII	GAAGA	3 cut(s)	6, 16, 29
MluCI	AATT	2 cut(s)	48, 159
MnlI	CCTC	4 cut(s)	99, 147, 150, 186
MseI	TTAA	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	57
SetI	ASST	3 cut(s)	139, 171, 178
SfaNI	GCATC	1 cut(s)	85
SgeI	CNNG	7 cut(s)	31, 53, 82, 95, 112, 138, 165
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	2 cut(s)	48, 159
SsiI	CCGC	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	33
TasI	AATT	2 cut(s)	48, 159
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	17, 152
TspRI	CASTG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.