Prupe.1G404500_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
35607222 .. 35607700
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G404500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 255 bp
ATGGACCAAAAAAACCTGCGTTTAACTTGTCAAGTTTCCCAAGACCAGGTTTCCTCCAACATGGTGGATCGAATCAGTGAATTACCAGATGTAATTCTTGTGACTATAGTGTCCTGCTTGCGTGCACTGATGGAAAAAGTAGCTACTAGTATCCTCTCGAAGCGATGGCGTTATGTTTGGGTTTATAGTACGTACGACTCTCGACTTTCGGGGGACCTGATGACATGCAAATCGATGCCTACGTCAAGCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

85

Amino Acids

9.54

Weight (kDa)

8.55

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 24
AciI CCGC 1 cut(s) 249
AclWI GGATC 1 cut(s) 75
AfaI GTAC 2 cut(s) 190, 194
AfiI CCNNNNNNNGG 1 cut(s) 46
AhlI ACTAGT 1 cut(s) 146
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw21I GWGCWC 1 cut(s) 127
Alw44I GTGCAC 1 cut(s) 123
AlwI GGATC 1 cut(s) 75
ApaLI GTGCAC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 4, 214
AvaII GGWCC 2 cut(s) 4, 214
BaeGI GKGCMC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 127
BccI CCATC 2 cut(s) 124, 159
BciT130I CCWGG 1 cut(s) 47
BciVI GTATCC 1 cut(s) 161
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 24
BfuI GTATCC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 2 cut(s) 4, 214
BmgT120I GGNCC 2 cut(s) 4, 214
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 225
Bsa29I ATCGAT 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 127
BshVI ATCGAT 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 127
BsiWI CGTACG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 1 cut(s) 249
BspDI ATCGAT 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 215
BspMI ACCTGC 1 cut(s) 24
BspPI GGATC 1 cut(s) 75
BssMI GATC 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 119, 123
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 127
BstSNI TACGTA 1 cut(s) 192
BstXI CCANNNNNNTGG 1 cut(s) 64
Bsu15I ATCGAT 1 cut(s) 233
BsuI GTATCC 1 cut(s) 161
BsuTUI ATCGAT 1 cut(s) 233
BtgZI GCGATG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 82, 125
BveI ACCTGC 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 119, 123
Cfr13I GGNCC 2 cut(s) 4, 214
ClaI ATCGAT 1 cut(s) 233
CsiI ACCWGGT 1 cut(s) 45
Csp6I GTAC 2 cut(s) 189, 193
CviAII CATG 2 cut(s) 61, 225
CviJI RGCY 1 cut(s) 143
CviKI_1 RGCY 1 cut(s) 143
CviQI GTAC 2 cut(s) 189, 193
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
DrdI GACNNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 109
Eco105I TACGTA 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 4, 214
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 45
FaeI CATG 2 cut(s) 64, 228
FaiI YATR 5 cut(s) 62, 107, 174, 186, 226
FaqI GGGAC 1 cut(s) 227
FatI CATG 2 cut(s) 60, 224
FauI CCCGC 1 cut(s) 242
FspBI CTAG 1 cut(s) 147
Hin1II CATG 2 cut(s) 64, 228
HinfI GANTC 2 cut(s) 72, 197
Hpy166II GTNNAC 1 cut(s) 125
Hpy188III TCNNGA 2 cut(s) 157, 201
Hpy8I GTNNAC 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 191, 242
HpyCH4V TGCA 2 cut(s) 125, 228
HpySE526I ACGT 2 cut(s) 191, 242
Hsp92II CATG 2 cut(s) 64, 228
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 6 cut(s) 29, 32, 59, 99, 127, 230
LweI GCATC 1 cut(s) 225
MabI ACCWGGT 1 cut(s) 45
MaeI CTAG 1 cut(s) 147
MaeII ACGT 2 cut(s) 191, 242
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 80, 93
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 2 cut(s) 64, 164
MseI TTAA 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
NdeII GATC 1 cut(s) 67
NlaIII CATG 2 cut(s) 64, 228
NlaIV GGNNCC 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 100
NspI RCATGY 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PfeI GAWTC 1 cut(s) 72
Pfl23II CGTACG 1 cut(s) 192
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Ppu21I YACGTR 1 cut(s) 192
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspLI CGTACG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 2 cut(s) 4, 214
PspPPI RGGWCCY 1 cut(s) 214
RsaI GTAC 2 cut(s) 190, 194
RsaNI GTAC 2 cut(s) 189, 193
SaqAI TTAA 1 cut(s) 23
Sau3AI GATC 1 cut(s) 67
Sau96I GGNCC 2 cut(s) 4, 214
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 127
SetI ASST 6 cut(s) 18, 51, 145, 194, 219, 245
SexAI ACCWGGT 1 cut(s) 45
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 2 cut(s) 4, 214
SnaBI TACGTA 1 cut(s) 192
SpeI ACTAGT 1 cut(s) 146
Sse9I AATT 2 cut(s) 80, 93
SsiI CCGC 1 cut(s) 249
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 45
TaiI ACGT 2 cut(s) 194, 245
TaqI TCGA 4 cut(s) 70, 158, 202, 233
TasI AATT 2 cut(s) 80, 93
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 82, 132
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspRI CASTG 2 cut(s) 82, 132
VneI GTGCAC 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 4, 214
XceI RCATGY 1 cut(s) 228
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.