Prupe.1G416900_v2.0.a1

branched-chain-amino-acid aminotransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
36191061 .. 36193431
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G416900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 912 bp
ATGGATCCTATCTATATATGTTGGGCTTTTGGGCTTCAATGGCTTGGTCATTGTCAGCCTTGCGACCCAGACCAAATTGCTTATATTTTAACGGGTGATTTTGCGTGTCCCACGGGTATTTGGTACGTGCCGGACAAACCCACCAAGACAAAGAACAGCCAAACTTCTGAATTGCCTGATACAACTTGGGATAACCTTGGATTCGACAAAACCATGTCAGCTGATTATATGTTTATCATGAAGAGTTCCGAAGATAGAAGCTTTTCAGATGGTGGGTTACAACGTTTTGGGAAAATCAAATTGAACCCAGCAGCCTGTGTCTTGAACTATGGCCAGGGAATAATTGAAGAATTGAAAGCCTACAGGAAGCCAGAGAATTCTATATTACTATTTCGCCCAGAGGAACATGGGTTGCGGATGAGAGTGGGTGCAGAGCGCCTGCTTATGCCTGCACCAACCGTTGAGCAGTTTGTGGAAGCTGTCAAAGTTACTGTATTGGAAAATAGACGTTGGGTTCCCTCGCCAAATAAAGGCTTTCTACATATTCGACCGCTACTTATTGGGAGCGGACCTGTTCTTAGTCTTACACCAGCTCCAGAATTCATCTTTCTGATTTTGGTGACCCCAATGGGGGACTATTCTAGGGGAGGCTTAGAACCTATCAATTTGGTGGTTGAAAACGAAATCCATCATGCATTTCATGGTGGAGCTGGAAGTGTAAAATTATGCTGCTGTAATTTCCACTTACCACTTATTCACATAGCGCTTAGTGGCTGTTTATCAATCGGTCTTCCTGTTGGTGCACTATGGTCATTTTGGCATTCTCACTGTTTAGCAATTCATAAAGAAGCTTCTGCTGATTGCTGGAAGATGGCTACAACAAATCATCCGGGCTCTTATCATTTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

304

Amino Acids

33.78

Weight (kDa)

6.34

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 567
AciI CCGC 3 cut(s) 415, 551, 567
AclI AACGTT 1 cut(s) 283
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 2 cut(s) 376, 599
AfaI GTAC 1 cut(s) 125
AfeI AGCGCT 1 cut(s) 765
AfiI CCNNNNNNNGG 3 cut(s) 530, 630, 631
AgsI TTSAA 6 cut(s) 38, 304, 325, 347, 355, 677
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 6 cut(s) 221, 261, 479, 593, 710, 851
AluI AGCT 6 cut(s) 221, 261, 479, 593, 710, 851
Alw21I GWGCWC 1 cut(s) 805
Alw44I GTGCAC 1 cut(s) 801
AlwI GGATC 1 cut(s) 12
Aor51HI AGCGCT 1 cut(s) 765
AoxI GGCC 1 cut(s) 331
ApaLI GTGCAC 1 cut(s) 801
ApeKI GCWGC 2 cut(s) 311, 729
ApoI RAATTY 2 cut(s) 376, 599
Asp700I GAANNNNTTC 1 cut(s) 262
AspLEI GCGC 2 cut(s) 438, 766
AspS9I GGNCC 1 cut(s) 569
AsuC2I CCSGG 1 cut(s) 891
AsuHPI GGTGA 2 cut(s) 107, 631
AvaII GGWCC 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 805
BalI TGGCCA 1 cut(s) 333
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 896
BbsI GAAGAC 1 cut(s) 782
Bbv12I GWGCWC 1 cut(s) 805
BbvI GCAGC 2 cut(s) 323, 716
BccI CCATC 3 cut(s) 263, 696, 865
BciT130I CCWGG 1 cut(s) 335
BcnI CCSGG 1 cut(s) 891
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 361
BfoI RGCGCY 2 cut(s) 439, 767
BisI GCNGC 2 cut(s) 312, 730
BlsI GCNGC 2 cut(s) 313, 731
Bme1390I CCNGG 2 cut(s) 335, 891
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 2 cut(s) 6, 516
BmrFI CCNGG 2 cut(s) 335, 891
BpiI GAAGAC 1 cut(s) 782
BpmI CTGGAG 1 cut(s) 579
BpuMI CCSGG 1 cut(s) 891
BsaAI YACGTR 1 cut(s) 127
BsaJI CCNNGG 3 cut(s) 111, 196, 334
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 530, 630, 631
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 111, 196, 334
BseGI GGATG 2 cut(s) 423, 886
BseLI CCNNNNNNNGG 3 cut(s) 530, 630, 631
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 2 cut(s) 323, 716
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 2 cut(s) 435, 450
Bsh1285I CGRYCG 1 cut(s) 551
BshFI GGCC 1 cut(s) 333
BsiEI CGRYCG 1 cut(s) 551
BsiHKAI GWGCWC 1 cut(s) 805
BsiSI CCGG 2 cut(s) 131, 890
BslFI GGGAC 2 cut(s) 93, 647
BslI CCNNNNNNNGG 3 cut(s) 530, 630, 631
BsmFI GGGAC 2 cut(s) 93, 647
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 1 cut(s) 333
Bsp1286I GDGCHC 2 cut(s) 805, 896
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 3 cut(s) 415, 551, 567
BspANI GGCC 1 cut(s) 333
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 6, 516
BspPI GGATC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 567
BssECI CCNNGG 3 cut(s) 111, 196, 334
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 3 cut(s) 460, 493, 830
Bst6I CTCTTC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 440, 450
BstDEI CTNAG 3 cut(s) 578, 652, 767
BstDSI CCRYGG 1 cut(s) 111
BstEII GGTNACC 1 cut(s) 619
BstF5I GGATG 2 cut(s) 423, 886
BstH2I RGCGCY 2 cut(s) 439, 767
BstHHI GCGC 2 cut(s) 438, 766
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMCI CGRYCG 1 cut(s) 551
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 335
BstPI GGTNACC 1 cut(s) 619
BstSCI CCNGG 2 cut(s) 333, 889
BstSFI CTRYAG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 805
BstV1I GCAGC 2 cut(s) 323, 716
BstV2I GAAGAC 1 cut(s) 782
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 423, 886
BtsIMutI CAGTG 1 cut(s) 826
Cac8I GCNNGC 2 cut(s) 440, 450
CciI TCATGA 1 cut(s) 237
CfoI GCGC 2 cut(s) 438, 766
Cfr13I GGNCC 1 cut(s) 569
Csp6I GTAC 1 cut(s) 124
CviAII CATG 5 cut(s) 214, 238, 407, 692, 701
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 3 cut(s) 578, 652, 767
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 896
Eco47I GGWCC 1 cut(s) 569
Eco47III AGCGCT 1 cut(s) 765
Eco91I GGTNACC 1 cut(s) 619
EcoO65I GGTNACC 1 cut(s) 619
EcoRI GAATTC 2 cut(s) 376, 599
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 697
EcoT38I GRGCYC 1 cut(s) 896
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 5 cut(s) 217, 241, 410, 695, 704
FaqI GGGAC 2 cut(s) 93, 647
FatI CATG 5 cut(s) 213, 237, 406, 691, 700
Fnu4HI GCNGC 2 cut(s) 312, 730
FokI GGATG 2 cut(s) 430, 873
FriOI GRGCYC 1 cut(s) 896
Fsp4HI GCNGC 2 cut(s) 312, 730
FspBI CTAG 1 cut(s) 642
GlaI GCGC 2 cut(s) 437, 765
GluI GCNGC 2 cut(s) 312, 730
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 1 cut(s) 579
HaeII RGCGCY 2 cut(s) 439, 767
HaeIII GGCC 1 cut(s) 333
HapII CCGG 2 cut(s) 131, 890
HhaI GCGC 2 cut(s) 438, 766
Hin1II CATG 5 cut(s) 217, 241, 410, 695, 704
Hin6I GCGC 2 cut(s) 436, 764
HinP1I GCGC 2 cut(s) 436, 764
HindIII AAGCTT 2 cut(s) 259, 849
HinfI GANTC 1 cut(s) 201
HpaII CCGG 2 cut(s) 131, 890
HphI GGTGA 2 cut(s) 107, 631
Hpy166II GTNNAC 1 cut(s) 803
Hpy188I TCNGA 4 cut(s) 169, 250, 268, 612
Hpy188III TCNNGA 3 cut(s) 238, 322, 596
Hpy8I GTNNAC 1 cut(s) 803
HpyCH4III ACNGT 3 cut(s) 460, 493, 830
HpyCH4IV ACGT 3 cut(s) 126, 283, 508
HpyCH4V TGCA 4 cut(s) 431, 452, 695, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 3 cut(s) 578, 652, 767
HpySE526I ACGT 3 cut(s) 126, 283, 508
Hsp92II CATG 5 cut(s) 217, 241, 410, 695, 704
HspAI GCGC 2 cut(s) 436, 764
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 3 cut(s) 564, 598, 707
Lsp1109I GCAGC 2 cut(s) 323, 716
MaeI CTAG 1 cut(s) 642
MaeII ACGT 3 cut(s) 126, 283, 508
MaeIII GTNAC 3 cut(s) 276, 487, 619
MalI GATC 1 cut(s) 6
MbiI CCGCTC 1 cut(s) 567
MboI GATC 1 cut(s) 4
MboII GAAGA 5 cut(s) 253, 263, 359, 782, 880
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 805, 896
MlsI TGGCCA 1 cut(s) 333
MluNI TGGCCA 1 cut(s) 333
MnlI CCTC 3 cut(s) 394, 529, 641
Mox20I TGGCCA 1 cut(s) 333
Mph1103I ATGCAT 1 cut(s) 697
MroXI GAANNNNTTC 1 cut(s) 262
MscI TGGCCA 1 cut(s) 333
MseI TTAA 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 2 cut(s) 131, 890
MspR9I CCNGG 2 cut(s) 335, 891
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 891
NdeII GATC 1 cut(s) 4
NlaIII CATG 5 cut(s) 217, 241, 410, 695, 704
NlaIV GGNNCC 2 cut(s) 6, 516
NmuCI GTSAC 1 cut(s) 619
NsiI ATGCAT 1 cut(s) 697
PagI TCATGA 1 cut(s) 237
PctI GAATGC 1 cut(s) 820
PdmI GAANNNNTTC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 313, 731
Ppu21I YACGTR 1 cut(s) 127
Psp1406I AACGTT 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 333
PspEI GGTNACC 1 cut(s) 619
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 6, 516
PspPI GGNCC 1 cut(s) 569
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 221
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 2 cut(s) 312, 730
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 569
ScrFI CCNGG 2 cut(s) 335, 891
SduI GDGCHC 2 cut(s) 805, 896
SfcI CTRYAG 1 cut(s) 361
SinI GGWCC 1 cut(s) 569
SsiI CCGC 3 cut(s) 415, 551, 567
SspMI CTAG 1 cut(s) 642
StyD4I CCNGG 2 cut(s) 333, 889
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 3 cut(s) 460, 493, 830
TaiI ACGT 3 cut(s) 129, 286, 511
TaqI TCGA 2 cut(s) 204, 547
TaqII GACCGA 1 cut(s) 776
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 1 cut(s) 833
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 2 cut(s) 311, 729
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 4 cut(s) 254, 592, 689, 830
TspRI CASTG 1 cut(s) 833
VneI GTGCAC 1 cut(s) 801
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 2 cut(s) 376, 599
XmnI GAANNNNTTC 1 cut(s) 262
XspI CTAG 1 cut(s) 642
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.