Prupe.1G417000_v2.0.a1

branched-chain-amino-acid aminotransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
36193572 .. 36194771
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G417000.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 456 bp
ATGATTTTGAAGGCACATGTGGAAGCTAAAGAAAATGGTTTCTCTGATGTTTTGTTCCTCGATTCTGTTCACCAAAGATATGTTGAAGAGACTTCTACTGCTAACATTTTTCTCGTGAAGGATACGATTATCTCCACTCCAGCATTGGAAGAAGGGACAGTTTTGCCTGGCGTTACACGTAAATGTGTAACTGAAATTGCTTGCAGCCAAGGGTATCAGGTTGAGGAACGCCTTGTGTCGGTTGAGGAATTATTTGAAGCTGATGAAGTCTTCTGTACTGGAAATGCTGTCCATTTATCACGTGTGGGCAGCATAACTTACCTGGGCAAAAAGGTGTCTTGCTGTCGTGTCTCAGCAACTGCACCGGGCGCTGTTAAATATACAAATGGGTCATACAGAAGACAAGTTGTGTTGGACAGTAACCTCGAAGTAGGAAGGATTGATCACGGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

152

Amino Acids

16.52

Weight (kDa)

5.37

Isoelectric Point (pI)

29.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 302
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 238
AflIII ACRYGT 3 cut(s) 16, 176, 301
AgsI TTSAA 3 cut(s) 10, 86, 257
AjnI CCWGG 2 cut(s) 166, 321
AluBI AGCT 2 cut(s) 26, 260
AluI AGCT 2 cut(s) 26, 260
Alw26I GTCTC 2 cut(s) 83, 355
AlwNI CAGNNNCTG 1 cut(s) 359
ApeKI GCWGC 2 cut(s) 204, 309
AspLEI GCGC 1 cut(s) 371
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 62
BauI CACGAG 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 302
BbsI GAAGAC 2 cut(s) 262, 406
BbvI GCAGC 2 cut(s) 216, 321
BciT130I CCWGG 2 cut(s) 168, 323
BciVI GTATCC 1 cut(s) 115
BclI TGATCA 1 cut(s) 442
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 2 cut(s) 83, 355
BfoI RGCGCY 1 cut(s) 372
BfuI GTATCC 1 cut(s) 115
BisI GCNGC 2 cut(s) 205, 310
BlsI GCNGC 2 cut(s) 206, 311
Bme1390I CCNGG 3 cut(s) 168, 323, 366
BmrFI CCNGG 3 cut(s) 168, 323, 366
BpiI GAAGAC 2 cut(s) 262, 406
BpmI CTGGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 366
BsaAI YACGTR 2 cut(s) 179, 302
BsaJI CCNNGG 2 cut(s) 208, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 2 cut(s) 168, 323
BseDI CCNNGG 2 cut(s) 208, 322
BseGI GGATG 1 cut(s) 455
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 283
BseXI GCAGC 2 cut(s) 216, 321
BsgI GTGCAG 1 cut(s) 345
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 83, 355
BsmFI GGGAC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 442
BspCNI CTCAG 1 cut(s) 365
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 208, 322
BssMI GATC 1 cut(s) 442
BssSI CACGAG 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 208
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 168, 323
Bst4CI ACNGT 2 cut(s) 160, 419
Bst6I CTCTTC 1 cut(s) 81
BstBAI YACGTR 2 cut(s) 179, 302
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 455
BstH2I RGCGCY 1 cut(s) 372
BstHHI GCGC 1 cut(s) 371
BstKTI GATC 1 cut(s) 445
BstMAI GTCTC 2 cut(s) 83, 355
BstMBI GATC 1 cut(s) 442
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 2 cut(s) 168, 323
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 3 cut(s) 166, 321, 364
BstV1I GCAGC 2 cut(s) 216, 321
BstV2I GAAGAC 2 cut(s) 262, 406
BsuI GTATCC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 202
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 17
CviJI RGCY 3 cut(s) 26, 207, 260
CviKI_1 RGCY 3 cut(s) 26, 207, 260
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 352
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 208
Eco72I CACGTG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 166, 321
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 1 cut(s) 20
FaiI YATR 5 cut(s) 18, 81, 314, 381, 394
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 16
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 205, 310
Fsp4HI GCNGC 2 cut(s) 205, 310
GlaI GCGC 1 cut(s) 370
GluI GCNGC 2 cut(s) 205, 310
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 372
HapII CCGG 1 cut(s) 365
HhaI GCGC 1 cut(s) 371
Hin1II CATG 1 cut(s) 20
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HinfI GANTC 1 cut(s) 62
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 4 cut(s) 4, 112, 146, 429
HpyCH4III ACNGT 2 cut(s) 160, 419
HpyCH4IV ACGT 2 cut(s) 178, 301
HpyCH4V TGCA 2 cut(s) 204, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 2 cut(s) 178, 301
Hsp92II CATG 1 cut(s) 20
HspAI GCGC 1 cut(s) 369
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 1 cut(s) 442
LpnPI CCDG 8 cut(s) 153, 153, 180, 203, 264, 308, 335, 378
Lsp1109I GCAGC 2 cut(s) 216, 321
MaeII ACGT 2 cut(s) 178, 301
MaeIII GTNAC 3 cut(s) 172, 187, 419
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 4 cut(s) 98, 161, 262, 411
MluCI AATT 2 cut(s) 195, 248
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 4 cut(s) 68, 217, 238, 434
MseI TTAA 2 cut(s) 375, 454
MslI CAYNNNNRTG 1 cut(s) 181
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 3 cut(s) 168, 323, 366
MvaI CCWGG 2 cut(s) 168, 323
MwoI GCNNNNNNNGC 1 cut(s) 368
NciI CCSGG 1 cut(s) 366
NdeII GATC 1 cut(s) 442
NlaIII CATG 1 cut(s) 20
NspI RCATGY 1 cut(s) 20
PciI ACATGT 1 cut(s) 16
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 206, 311
PmaCI CACGTG 1 cut(s) 302
PmlI CACGTG 1 cut(s) 302
Ppu21I YACGTR 2 cut(s) 179, 302
PscI ACATGT 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 166, 321
PspCI CACGTG 1 cut(s) 302
PspGI CCWGG 2 cut(s) 166, 321
PstNI CAGNNNCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 181
SaqAI TTAA 2 cut(s) 375, 454
SatI GCNGC 2 cut(s) 205, 310
Sau3AI GATC 1 cut(s) 442
ScrFI CCNGG 3 cut(s) 168, 323, 366
SetI ASST 8 cut(s) 28, 181, 222, 262, 304, 324, 336, 426
SmiMI CAYNNNNRTG 1 cut(s) 181
Sse9I AATT 2 cut(s) 195, 248
StyD4I CCNGG 3 cut(s) 166, 321, 364
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 160, 419
TaiI ACGT 2 cut(s) 181, 304
TaqI TCGA 2 cut(s) 60, 426
TasI AATT 2 cut(s) 195, 248
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 375, 454
Tru9I TTAA 2 cut(s) 375, 454
TseI GCWGC 2 cut(s) 204, 309
TspDTI ATGAA 1 cut(s) 279
XceI RCATGY 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.