Prupe.1G428400_v2.0.a1

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
36796639 .. 36798227
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G428400.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 714 bp
ATGGATATAGCAGGGTTGGAGAAGAAGATGGCGAGGTTGATGGCAAAAATGGACTGCTTCTTGCAAAGATCGGTTGAGGAGCGTCGTCGAATTTTGTCACCCAATTTGGCATCAAATGGTATAGAGGGCAACATGTTAATGATCGATAACTTATTGTCAATGCAACTGTTGAAAAATAATCAACAAACAGAGCCCGAATTCTACACCGACGAAATAATCAAAGGAATCATTTTGGTAACTCACACTTCTTTAATGGGCAATGGCGAAGTGAGAGATGAGATAGAGACCAAGATTGGAGAAAAGCGTGCGTTGGAAGGGCAAGACTTGCCAAAGCTGTGTAACTTGCAAAATGTTCAATGTGAGACACTCCGCTTGTACCCGCCTTTTCCAATTCTGGTGCCTCGTGAAGACTCTGAGGACTTTGTGGTGGGGGGATTTGACGTGCCACGTCATACAATGCGGGTGGTGAATGCGTGGGCCATCCATAGGGACCCTGAGGTGTGGGAGGACCCCACAAAGCGCGGATGTCCTGGGGCTGGCTTAGCAAACAGGTTGGTTGAACTGGCTCTTGGAAGCTTGGTTCAGTCATTTGAGTGGGAGAGGATTGGGGAGGACATGGTGGATATGAGTGAAGGCTTGGGTCTTATGATGCCAAGGGTTAAGCCCTTGGAGGCTATGTGTAAACCAAGACCATTCACGCTGGCTTCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

238

Amino Acids

26.83

Weight (kDa)

5.09

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 397
AccII CGCG 1 cut(s) 522
AciI CCGC 4 cut(s) 370, 380, 460, 522
AcsI RAATTY 2 cut(s) 90, 197
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 2 cut(s) 486, 536
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 4 cut(s) 172, 356, 560, 708
AjiI CACGTC 2 cut(s) 442, 449
AjnI CCWGG 1 cut(s) 529
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AloI GAACNNNNNNTCC 2 cut(s) 564, 596
AluBI AGCT 2 cut(s) 334, 576
AluI AGCT 2 cut(s) 334, 576
Alw26I GTCTC 2 cut(s) 278, 356
AoxI GGCC 1 cut(s) 477
ApoI RAATTY 2 cut(s) 90, 197
AspLEI GCGC 1 cut(s) 522
AspS9I GGNCC 3 cut(s) 477, 490, 508
AsuHPI GGTGA 2 cut(s) 90, 478
AvaII GGWCC 2 cut(s) 490, 508
AxyI CCTNAGG 1 cut(s) 495
BanI GGYRCC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 195
BauI CACGAG 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 414
BccI CCATC 3 cut(s) 22, 34, 488
BciT130I CCWGG 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 278, 356
BlpI GCTNAGC 1 cut(s) 541
Bme1390I CCNGG 1 cut(s) 531
Bme18I GGWCC 2 cut(s) 490, 508
BmgBI CACGTC 2 cut(s) 442, 449
BmgT120I GGNCC 3 cut(s) 477, 490, 508
BmiI GGNNCC 4 cut(s) 399, 491, 492, 510
BmrFI CCNGG 1 cut(s) 531
BmsI GCATC 2 cut(s) 119, 639
BpiI GAAGAC 1 cut(s) 414
Bpu1102I GCTNAGC 1 cut(s) 541
Bsa29I ATCGAT 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 530, 653, 666
BsaXI ACNNNNNCTCC 2 cut(s) 662, 692
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 536
Bse1I ACTGG 1 cut(s) 567
Bse21I CCTNAGG 1 cut(s) 495
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 531
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 530, 653, 666
BseGI GGATG 2 cut(s) 480, 530
BseLI CCNNNNNNNGG 2 cut(s) 486, 536
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 405, 486
BseNI ACTGG 1 cut(s) 567
BseRI GAGGAG 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 522
BshFI GGCC 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 397
BshVI ATCGAT 1 cut(s) 144
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 486, 536
BsmAI GTCTC 2 cut(s) 278, 356
BsmFI GGGAC 1 cut(s) 503
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 1 cut(s) 479
Bso31I GGTCTC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 68, 141
Bsp1720I GCTNAGC 1 cut(s) 541
BspACI CCGC 4 cut(s) 370, 380, 460, 522
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 2 cut(s) 406, 487
BspDI ATCGAT 1 cut(s) 144
BspFNI CGCG 1 cut(s) 522
BspLI GGNNCC 4 cut(s) 399, 491, 492, 510
BspT107I GGYRCC 1 cut(s) 397
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 1 cut(s) 567
BssECI CCNNGG 3 cut(s) 530, 653, 666
BssMI GATC 2 cut(s) 68, 141
BssSI CACGAG 1 cut(s) 402
BssT1I CCWWGG 2 cut(s) 653, 666
Bst2BI CACGAG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 325
BstC8I GCNNGC 3 cut(s) 306, 538, 702
BstDEI CTNAG 3 cut(s) 414, 495, 541
BstF5I GGATG 2 cut(s) 480, 530
BstFNI CGCG 1 cut(s) 522
BstHHI GCGC 1 cut(s) 522
BstKTI GATC 2 cut(s) 71, 144
BstMAI GTCTC 2 cut(s) 278, 356
BstMBI GATC 2 cut(s) 68, 141
BstMWI GCNNNNNNNGC 2 cut(s) 325, 542
BstNI CCWGG 1 cut(s) 531
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 529
BstUI CGCG 1 cut(s) 522
BstV2I GAAGAC 1 cut(s) 414
Bsu15I ATCGAT 1 cut(s) 144
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 1 cut(s) 479
BsuTUI ATCGAT 1 cut(s) 144
BtrI CACGTC 2 cut(s) 442, 449
BtsCI GGATG 2 cut(s) 480, 530
Cac8I GCNNGC 3 cut(s) 306, 538, 702
CfoI GCGC 1 cut(s) 522
Cfr13I GGNCC 3 cut(s) 477, 490, 508
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 376
CspCI CAANNNNNGTGG 2 cut(s) 444, 479
CviAII CATG 2 cut(s) 133, 616
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 3 cut(s) 414, 495, 541
DpnI GATC 2 cut(s) 70, 143
DpnII GATC 2 cut(s) 68, 141
Eco130I CCWWGG 2 cut(s) 653, 666
Eco24I GRGCYC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 2 cut(s) 490, 508
Eco81I CCTNAGG 1 cut(s) 495
EcoO109I RGGNCCY 2 cut(s) 490, 508
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 529
EcoT14I CCWWGG 2 cut(s) 653, 666
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 2 cut(s) 653, 666
FaeI CATG 2 cut(s) 136, 619
FaiI YATR 9 cut(s) 8, 122, 134, 453, 486, 617, 626, 647, 677
FaqI GGGAC 1 cut(s) 503
FatI CATG 2 cut(s) 132, 615
FauI CCCGC 2 cut(s) 387, 453
FokI GGATG 2 cut(s) 467, 537
FriOI GRGCYC 1 cut(s) 195
GlaI GCGC 1 cut(s) 521
HaeIII GGCC 1 cut(s) 479
HgaI GACGC 1 cut(s) 71
HhaI GCGC 1 cut(s) 522
Hin1II CATG 2 cut(s) 136, 619
Hin6I GCGC 1 cut(s) 520
HinP1I GCGC 1 cut(s) 520
HindIII AAGCTT 1 cut(s) 574
HinfI GANTC 2 cut(s) 225, 410
HphI GGTGA 2 cut(s) 90, 478
Hpy166II GTNNAC 1 cut(s) 683
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 1 cut(s) 683
Hpy99I CGWCG 3 cut(s) 87, 90, 212
HpyAV CCTTC 2 cut(s) 308, 626
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4IV ACGT 2 cut(s) 441, 448
HpyCH4V TGCA 3 cut(s) 64, 163, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 325, 542
HpyF3I CTNAG 3 cut(s) 414, 495, 541
HpySE526I ACGT 2 cut(s) 441, 448
Hsp92II CATG 2 cut(s) 136, 619
HspAI GCGC 1 cut(s) 520
KflI GGGWCCC 1 cut(s) 490
Kzo9I GATC 2 cut(s) 68, 141
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 8 cut(s) 380, 507, 516, 522, 535, 543, 548, 686
LweI GCATC 2 cut(s) 119, 639
MaeII ACGT 2 cut(s) 441, 448
MaeIII GTNAC 3 cut(s) 96, 235, 338
MalI GATC 2 cut(s) 70, 143
MboI GATC 2 cut(s) 68, 141
MboII GAAGA 3 cut(s) 34, 37, 419
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 4 cut(s) 90, 103, 197, 390
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 291
MseI TTAA 3 cut(s) 137, 251, 660
MslI CAYNNNNRTG 2 cut(s) 137, 592
MspR9I CCNGG 1 cut(s) 531
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 1 cut(s) 531
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 2 cut(s) 325, 542
NdeII GATC 2 cut(s) 68, 141
NlaIII CATG 2 cut(s) 136, 619
NlaIV GGNNCC 4 cut(s) 399, 491, 492, 510
NmuCI GTSAC 1 cut(s) 96
NspI RCATGY 1 cut(s) 136
PciI ACATGT 1 cut(s) 132
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 1 cut(s) 225
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PpuMI RGGWCCY 2 cut(s) 490, 508
PscI ACATGT 1 cut(s) 132
Psp5II RGGWCCY 2 cut(s) 490, 508
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 4 cut(s) 399, 491, 492, 510
PspPI GGNCC 3 cut(s) 477, 490, 508
PspPPI RGGWCCY 2 cut(s) 490, 508
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 2 cut(s) 137, 592
SaqAI TTAA 3 cut(s) 137, 251, 660
Sau3AI GATC 2 cut(s) 68, 141
Sau96I GGNCC 3 cut(s) 477, 490, 508
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 531
SduI GDGCHC 1 cut(s) 195
SetI ASST 7 cut(s) 38, 336, 444, 451, 501, 554, 578
SfaNI GCATC 2 cut(s) 119, 639
SinI GGWCC 2 cut(s) 490, 508
SmiMI CAYNNNNRTG 2 cut(s) 137, 592
Sse9I AATT 4 cut(s) 90, 103, 197, 390
SsiI CCGC 4 cut(s) 370, 380, 460, 522
StyD4I CCNGG 1 cut(s) 529
StyI CCWWGG 2 cut(s) 653, 666
TaaI ACNGT 1 cut(s) 168
TaiI ACGT 2 cut(s) 444, 451
TaqI TCGA 2 cut(s) 88, 144
TasI AATT 4 cut(s) 90, 103, 197, 390
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 3 cut(s) 137, 251, 660
Tru9I TTAA 3 cut(s) 137, 251, 660
TseFI GTSAC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 96
VpaK11BI GGWCC 2 cut(s) 490, 508
XapI RAATTY 2 cut(s) 90, 197
XceI RCATGY 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.