Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

36808330 .. 36810805

Gene Structure 2476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G428600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGCCAGTTGCCAAGTTCTTTTATATTAGGCGCAAGTTCATAGCTACACCATTTCACATTGACCCAAAAAGAGCCAAAAGAATGGAAGAACCCTTCTGGTATAGTTTAGCTCTTATCATCTTCACCTTGCTTCTCAAGCTCTCCATAGCTAAAATTACCCGAAAACACAACAACTTTCCACCGAGCCCACCATATCTTCCTATCATTGGCCATCTCCATCTTCTAAAACAACCAATCCACCGAACTCTCCAAGCTCTTTCAGGAAAATTTGGTAAACTTCGGCTACTCCGCTGGGGTTCACGCAGAGTCCTCTTGGTTTCTTCCCCTTGGGTAGCAGAAGAGCTTTTCACAAAGCACGACATCATCTTCGCCAACCGCCCACGCTTGCTTATTGGAAAACACTTAGCGTACGACTTCACAACAGTCACTTTGGCTCCCTATGGAGACCTCTGGCGCAACCTCCGCCGCATAATGACCCTTGAGCTCTTCTCCGCTTCACGCCTTGCCCAGTTTTCGAGTATCAGACAAGGAGAAGTTCGTTTGCTACTGAATGAGATAATGAAGAAGAGTTGTACAGAGAGCAAGACAAAGATTGAGCTCAAGTCAAAATTTACGGAGACAAAGATTGAGCTCAAGTCAAAATTTACGGAGCTTTCATTTAACGTGATGACGATGATGATTGGTGAAAATGTTTTGGATGTTGAAGAGGCTAAGAATATACAGAAGGTTATTAGGGACGAAGTGGACTTATCAGGGGCAACAAATTTGGGAGAATTTTTCCCATTCTTACAGTGGATTGATATAACGGGGATTGAGAAGAAGATGGTGAGTTTGATGGCAGAGATGGACAGCTTTTTGCAGGGCTTGGTTGAAGAGCGTCCTGAAATTTTGTCCACGAAGTGTGGATCGAATGGAAAAGAGCTCCAATTCTACACTGACGAAATAATCAAGGGAATCATTCTGGTGATGCTGGTAGCTGGGACTGACACTTCATCAACAACACTAGATTGGGCAATGGCGCTGTTGCTAAACCATCCAGAGACAATGGAGAAAGTAAGAGCTGAGATAGAAGCCAAGATTGGACAAAGAACGTCTGTTGGAAGAGCAAGACTTGCCAAAGCTCACTTACTTACAGAAGCCTCTGAGGATTGTGTGGTAGGGGGATTTGATGTGCCACGTCATACAATGTTATTCATTAATGCGTGGGCTATCCATAGGGACCCTGAGGTGTGGGAGGACCCCACAAGATTTGAGCCAGAGAGGTTTGAAGGATGGAGTGGCGACGGCTCTGAAGGGTATAAGCTAATTGCGTTTGGGGCTGGAAGGCGTGGATGTCCAGGGGCTGCCCTAGCAAACAGGTTGATTGGATTGGCACTTGGAACTTGGATTCAGTCATTTGAGTGGGAGAGGATTAGTGAAGAGAATGTCGATACGAGTGAAGGTTTGGGCCTTTCCATGCCAAGGGCTCAGCCCTTGGAGGCTATGTGCAAACCACGCGCAATCATACCCCACATAGGAAAAACACCCTGTACGCGTGTATTGCTTCCAATCAGATTTGAAAATGCCAAGTATTCCGATTGGTTAAAATTTGAGTTCATTTTTGTTCACTATCTTCTTCACTCAAGGTCTCAAGGTGGTGATTGTTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00232 ko00380 ko00591 ko00830 ko00905 ko00943 ko00980 ko00982 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00232 map00380 map00591 map00830 map00905 map00943 map00980 map00982 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

551

Amino Acids

62.76

Weight (kDa)

9.03

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	1497, 1534
AciI	CCGC	5 cut(s)	289, 376, 463, 466, 492
AclWI	GGATC	1 cut(s)	913
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	7 cut(s)	266, 608, 641, 763, 773, 885, 1586
AcuI	CTGAAG	1 cut(s)	1311
AdeI	CACNNNGTG	1 cut(s)	900
AfaI	GTAC	3 cut(s)	410, 574, 1531
AfiI	CCNNNNNNNGG	3 cut(s)	206, 1461, 1514
AflIII	ACRYGT	1 cut(s)	1532
AgsI	TTSAA	4 cut(s)	704, 872, 1268, 1559
AjiI	CACGTC	1 cut(s)	1178
AjnI	CCWGG	1 cut(s)	1336
AjuI	GAANNNNNNNTTGG	2 cut(s)	1062, 1094
Alw21I	GWGCWC	4 cut(s)	486, 600, 633, 924
Alw26I	GTCTC	4 cut(s)	438, 611, 1034, 1632
AlwI	GGATC	1 cut(s)	913
AlwNI	CAGNNNCTG	1 cut(s)	1343
AoxI	GGCC	2 cut(s)	208, 1447
ApeKI	GCWGC	1 cut(s)	1343
ApoI	RAATTY	7 cut(s)	266, 608, 641, 763, 773, 885, 1586
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AseI	ATTAAT	1 cut(s)	1197
AspLEI	GCGC	4 cut(s)	33, 456, 1021, 1499
AspS9I	GGNCC	3 cut(s)	1219, 1237, 1447
AsuHPI	GGTGA	5 cut(s)	115, 695, 838, 976, 1649
AvaII	GGWCC	2 cut(s)	1219, 1237
AxyI	CCTNAGG	1 cut(s)	1224
BalI	TGGCCA	1 cut(s)	210
BanII	GRGCYC	6 cut(s)	188, 486, 600, 633, 924, 1468
Bbv12I	GWGCWC	4 cut(s)	486, 600, 633, 924
BbvI	GCAGC	1 cut(s)	1330
BccI	CCATC	7 cut(s)	219, 225, 817, 829, 838, 1041, 1266
BceAI	ACGGC	1 cut(s)	1300
BciT130I	CCWGG	1 cut(s)	1338
BcoDI	GTCTC	4 cut(s)	438, 611, 1034, 1632
BfaI	CTAG	2 cut(s)	1004, 1349
BfoI	RGCGCY	1 cut(s)	1022
BisI	GCNGC	2 cut(s)	466, 1344
BlpI	GCTNAGC	1 cut(s)	1467
BlsI	GCNGC	2 cut(s)	467, 1345
Bme1390I	CCNGG	1 cut(s)	1338
Bme18I	GGWCC	2 cut(s)	1219, 1237
BmgBI	CACGTC	1 cut(s)	1178
BmgT120I	GGNCC	3 cut(s)	1219, 1237, 1447
BmiI	GGNNCC	4 cut(s)	435, 1220, 1221, 1239
BmrFI	CCNGG	1 cut(s)	1338
BmrI	ACTGGG	1 cut(s)	502
BmsI	GCATC	1 cut(s)	957
BmuI	ACTGGG	1 cut(s)	502
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
Bpu1102I	GCTNAGC	1 cut(s)	1467
BpuEI	CTTGAG	6 cut(s)	119, 500, 584, 617, 1606, 1614
BsaI	GGTCTC	2 cut(s)	438, 1632
BsaJI	CCNNGG	4 cut(s)	326, 1337, 1460, 1473
BsaXI	ACNNNNNCTCC	4 cut(s)	418, 448, 1469, 1499
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 1461, 1514
Bse1I	ACTGG	2 cut(s)	5, 508
Bse21I	CCTNAGG	1 cut(s)	1224
Bse3DI	GCAATG	1 cut(s)	1020
BseBI	CCWGG	1 cut(s)	1338
BseDI	CCNNGG	4 cut(s)	326, 1337, 1460, 1473
BseGI	GGATG	4 cut(s)	703, 1033, 1277, 1337
BseLI	CCNNNNNNNGG	3 cut(s)	206, 1461, 1514
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	4 cut(s)	1053, 1134, 1215, 1481
BseNI	ACTGG	2 cut(s)	5, 508
BseXI	GCAGC	1 cut(s)	1330
BseYI	CCCAGC	2 cut(s)	291, 977
Bsh1236I	CGCG	2 cut(s)	1497, 1534
BshFI	GGCC	2 cut(s)	210, 1449
BsiHKAI	GWGCWC	4 cut(s)	486, 600, 633, 924
BsiWI	CGTACG	1 cut(s)	408
BslFI	GGGAC	3 cut(s)	749, 994, 1232
BslI	CCNNNNNNNGG	3 cut(s)	206, 1461, 1514
BsmAI	GTCTC	4 cut(s)	438, 611, 1034, 1632
BsmFI	GGGAC	3 cut(s)	749, 994, 1232
BsnI	GGCC	2 cut(s)	210, 1449
Bso31I	GGTCTC	2 cut(s)	438, 1632
Bsp1286I	GDGCHC	6 cut(s)	188, 486, 600, 633, 924, 1468
Bsp1407I	TGTACA	1 cut(s)	572
Bsp143I	GATC	1 cut(s)	905
Bsp1720I	GCTNAGC	1 cut(s)	1467
BspACI	CCGC	5 cut(s)	289, 376, 463, 466, 492
BspANI	GGCC	2 cut(s)	210, 1449
BspCNI	CTCAG	4 cut(s)	1054, 1135, 1216, 1480
BspFNI	CGCG	2 cut(s)	1497, 1534
BspLI	GGNNCC	4 cut(s)	435, 1220, 1221, 1239
BspPI	GGATC	1 cut(s)	913
BspQI	GCTCTTC	4 cut(s)	333, 491, 867, 1096
BspTNI	GGTCTC	2 cut(s)	438, 1632
BsrDI	GCAATG	1 cut(s)	1020
BsrGI	TGTACA	1 cut(s)	572
BsrI	ACTGG	2 cut(s)	5, 508
BssECI	CCNNGG	4 cut(s)	326, 1337, 1460, 1473
BssMI	GATC	1 cut(s)	905
BssT1I	CCWWGG	3 cut(s)	326, 1460, 1473
Bst2UI	CCWGG	1 cut(s)	1338
Bst4CI	ACNGT	2 cut(s)	424, 792
Bst6I	CTCTTC	7 cut(s)	333, 491, 560, 699, 867, 1096, 1413
BstAPI	GCANNNNNTGC	1 cut(s)	1112
BstAUI	TGTACA	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	6 cut(s)	403, 711, 1062, 1143, 1224, 1467
BstF5I	GGATG	4 cut(s)	703, 1033, 1277, 1337
BstFNI	CGCG	2 cut(s)	1497, 1534
BstH2I	RGCGCY	1 cut(s)	1022
BstHHI	GCGC	4 cut(s)	33, 456, 1021, 1499
BstKTI	GATC	1 cut(s)	908
BstMAI	GTCTC	4 cut(s)	438, 611, 1034, 1632
BstMBI	GATC	1 cut(s)	905
BstMWI	GCNNNNNNNGC	7 cut(s)	136, 462, 1112, 1316, 1349, 1494, 1540
BstNI	CCWGG	1 cut(s)	1338
BstSCI	CCNGG	1 cut(s)	1336
BstUI	CGCG	2 cut(s)	1497, 1534
BstV1I	GCAGC	1 cut(s)	1330
BstXI	CCANNNNNNTGG	1 cut(s)	82
Bsu36I	CCTNAGG	1 cut(s)	1224
BsuRI	GGCC	2 cut(s)	210, 1449
BtrI	CACGTC	1 cut(s)	1178
BtsCI	GGATG	4 cut(s)	703, 1033, 1277, 1337
BtsIMutI	CAGTG	2 cut(s)	797, 933
Cac8I	GCNNGC	1 cut(s)	386
CaiI	CAGNNNCTG	1 cut(s)	1343
CfoI	GCGC	4 cut(s)	33, 456, 1021, 1499
Cfr13I	GGNCC	3 cut(s)	1219, 1237, 1447
CseI	GACGC	1 cut(s)	866
Csp6I	GTAC	3 cut(s)	409, 573, 1530
CspCI	CAANNNNNGTGG	2 cut(s)	1231, 1266
CviAII	CATG	1 cut(s)	1456
CviQI	GTAC	3 cut(s)	409, 573, 1530
DdeI	CTNAG	6 cut(s)	403, 711, 1062, 1143, 1224, 1467
DpnI	GATC	1 cut(s)	907
DpnII	GATC	1 cut(s)	905
DraIII	CACNNNGTG	1 cut(s)	900
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	7 cut(s)	333, 491, 560, 699, 867, 1096, 1413
EarI	CTCTTC	7 cut(s)	333, 491, 560, 699, 867, 1096, 1413
EciI	GGCGGA	1 cut(s)	452
Ecl136II	GAGCTC	4 cut(s)	484, 598, 631, 922
Eco130I	CCWWGG	3 cut(s)	326, 1460, 1473
Eco24I	GRGCYC	6 cut(s)	188, 486, 600, 633, 924, 1468
Eco31I	GGTCTC	2 cut(s)	438, 1632
Eco47I	GGWCC	2 cut(s)	1219, 1237
Eco53kI	GAGCTC	4 cut(s)	484, 598, 631, 922
Eco57I	CTGAAG	1 cut(s)	1311
Eco81I	CCTNAGG	1 cut(s)	1224
EcoICRI	GAGCTC	4 cut(s)	484, 598, 631, 922
EcoO109I	RGGNCCY	2 cut(s)	1219, 1237
EcoRII	CCWGG	1 cut(s)	1336
EcoT14I	CCWWGG	3 cut(s)	326, 1460, 1473
EcoT38I	GRGCYC	6 cut(s)	188, 486, 600, 633, 924, 1468
ErhI	CCWWGG	3 cut(s)	326, 1460, 1473
FaeI	CATG	1 cut(s)	1459
FaqI	GGGAC	3 cut(s)	749, 994, 1232
FatI	CATG	1 cut(s)	1455
Fnu4HI	GCNGC	2 cut(s)	466, 1344
FokI	GGATG	4 cut(s)	710, 1020, 1284, 1344
FriOI	GRGCYC	6 cut(s)	188, 486, 600, 633, 924, 1468
Fsp4HI	GCNGC	2 cut(s)	466, 1344
FspBI	CTAG	2 cut(s)	1004, 1349
GlaI	GCGC	4 cut(s)	32, 455, 1020, 1498
GluI	GCNGC	2 cut(s)	466, 1344
GsaI	CCCAGC	2 cut(s)	295, 981
HaeII	RGCGCY	1 cut(s)	1022
HaeIII	GGCC	2 cut(s)	210, 1449
HgaI	GACGC	1 cut(s)	866
HhaI	GCGC	4 cut(s)	33, 456, 1021, 1499
Hin1II	CATG	1 cut(s)	1459
Hin6I	GCGC	4 cut(s)	31, 454, 1019, 1497
HinP1I	GCGC	4 cut(s)	31, 454, 1019, 1497
HinfI	GANTC	3 cut(s)	306, 954, 1387
HphI	GGTGA	5 cut(s)	115, 695, 838, 976, 1649
Hpy166II	GTNNAC	5 cut(s)	275, 299, 745, 894, 1606
Hpy188I	TCNGA	5 cut(s)	524, 1144, 1291, 1553, 1576
Hpy188III	TCNNGA	3 cut(s)	261, 881, 1037
Hpy8I	GTNNAC	5 cut(s)	275, 299, 745, 894, 1606
Hpy99I	CGWCG	1 cut(s)	1286
HpyAV	CCTTC	6 cut(s)	103, 718, 1262, 1286, 1317, 1433
HpyCH4III	ACNGT	2 cut(s)	424, 792
HpyCH4IV	ACGT	3 cut(s)	663, 1091, 1177
HpyCH4V	TGCA	2 cut(s)	859, 1488
HpyF10VI	GCNNNNNNNGC	7 cut(s)	136, 462, 1112, 1316, 1349, 1494, 1540
HpyF3I	CTNAG	6 cut(s)	403, 711, 1062, 1143, 1224, 1467
HpySE526I	ACGT	3 cut(s)	663, 1091, 1177
Hsp92II	CATG	1 cut(s)	1459
HspAI	GCGC	4 cut(s)	31, 454, 1019, 1497
KflI	GGGWCCC	1 cut(s)	1219
Kzo9I	GATC	1 cut(s)	905
LguI	GCTCTTC	4 cut(s)	333, 491, 867, 1096
LmnI	GCTCC	3 cut(s)	439, 649, 927
Lsp1109I	GCAGC	1 cut(s)	1330
LweI	GCATC	1 cut(s)	957
MaeI	CTAG	2 cut(s)	1004, 1349
MaeII	ACGT	3 cut(s)	663, 1091, 1177
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	1 cut(s)	907
MboI	GATC	1 cut(s)	905
MhlI	GDGCHC	6 cut(s)	188, 486, 600, 633, 924, 1468
MlsI	TGGCCA	1 cut(s)	210
MluI	ACGCGT	1 cut(s)	1532
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	1078
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	3 cut(s)	660, 1197, 1583
MslI	CAYNNNNRTG	2 cut(s)	962, 1399
Msp20I	TGGCCA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	1338
MvaI	CCWGG	1 cut(s)	1338
MvnI	CGCG	2 cut(s)	1497, 1534
MwoI	GCNNNNNNNGC	7 cut(s)	136, 462, 1112, 1316, 1349, 1494, 1540
NdeII	GATC	1 cut(s)	905
NlaIII	CATG	1 cut(s)	1459
NlaIV	GGNNCC	4 cut(s)	435, 1220, 1221, 1239
NmuCI	GTSAC	1 cut(s)	424
PciSI	GCTCTTC	4 cut(s)	333, 491, 867, 1096
PfeI	GAWTC	2 cut(s)	954, 1387
Pfl23II	CGTACG	1 cut(s)	408
PkrI	GCNGC	2 cut(s)	467, 1345
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PpuMI	RGGWCCY	2 cut(s)	1219, 1237
PshBI	ATTAAT	1 cut(s)	1197
Psp124BI	GAGCTC	4 cut(s)	486, 600, 633, 924
Psp5II	RGGWCCY	2 cut(s)	1219, 1237
Psp6I	CCWGG	1 cut(s)	1336
PspFI	CCCAGC	2 cut(s)	291, 977
PspGI	CCWGG	1 cut(s)	1336
PspLI	CGTACG	1 cut(s)	408
PspN4I	GGNNCC	4 cut(s)	435, 1220, 1221, 1239
PspPI	GGNCC	3 cut(s)	1219, 1237, 1447
PspPPI	RGGWCCY	2 cut(s)	1219, 1237
PstNI	CAGNNNCTG	1 cut(s)	1343
RsaI	GTAC	3 cut(s)	410, 574, 1531
RsaNI	GTAC	3 cut(s)	409, 573, 1530
RseI	CAYNNNNRTG	2 cut(s)	962, 1399
SacI	GAGCTC	4 cut(s)	486, 600, 633, 924
SapI	GCTCTTC	4 cut(s)	333, 491, 867, 1096
SaqAI	TTAA	3 cut(s)	660, 1197, 1583
SatI	GCNGC	2 cut(s)	466, 1344
Sau3AI	GATC	1 cut(s)	905
Sau96I	GGNCC	3 cut(s)	1219, 1237, 1447
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	1338
SduI	GDGCHC	6 cut(s)	188, 486, 600, 633, 924, 1468
SfaNI	GCATC	1 cut(s)	957
SinI	GGWCC	2 cut(s)	1219, 1237
SmiMI	CAYNNNNRTG	2 cut(s)	962, 1399
SmlI	CTYRAG	6 cut(s)	134, 479, 599, 632, 1621, 1629
SmoI	CTYRAG	6 cut(s)	134, 479, 599, 632, 1621, 1629
SsiI	CCGC	5 cut(s)	289, 376, 463, 466, 492
SspMI	CTAG	2 cut(s)	1004, 1349
SstI	GAGCTC	4 cut(s)	486, 600, 633, 924
StyD4I	CCNGG	1 cut(s)	1336
StyI	CCWWGG	3 cut(s)	326, 1460, 1473
TaaI	ACNGT	2 cut(s)	424, 792
TaiI	ACGT	3 cut(s)	666, 1094, 1180
TaqI	TCGA	3 cut(s)	515, 908, 1428
TatI	WGTACW	1 cut(s)	572
TauI	GCSGC	1 cut(s)	468
TfiI	GAWTC	2 cut(s)	954, 1387
Tru1I	TTAA	3 cut(s)	660, 1197, 1583
Tru9I	TTAA	3 cut(s)	660, 1197, 1583
TscAI	CASTG	2 cut(s)	797, 940
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	1 cut(s)	1343
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	6 cut(s)	28, 575, 645, 981, 1183, 1585
TspGWI	ACGGA	2 cut(s)	629, 662
TspRI	CASTG	2 cut(s)	797, 940
VpaK11BI	GGWCC	2 cut(s)	1219, 1237
VspI	ATTAAT	1 cut(s)	1197
XapI	RAATTY	7 cut(s)	266, 608, 641, 763, 773, 885, 1586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	789
XspI	CTAG	2 cut(s)	1004, 1349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.