Prupe.1G437700_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0022513
Physical Location & Seq
Reverse (-)
37284813 .. 37287025
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G437700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 483 bp
ATGCTTCCATTACTCAATGCAGTGGAAAGGAACTTAACGGTCGACTACCAAAGAGGGTTTTTTTTCTATTTTCTTTTGCCTCCATCCATTTCCCTTCTTTCTTCCATCCAAAGAAAAATAGGAGAAGAAGAGACAGAGACAGAGGCAGAGAGATCTTCCGTTTGGTTCTCGGGAAAAATGATGGCGGCTAACTCTAAGTTATCATACGAGAGCTCTTTTCAGCAGTGTTTGGTGGAGGAAAACAGGAAGAAAATGGAAGCACTCAATCTGCCTCAGATTGCTCTGCAGGCTCATCGATCCCCTGTAAGCCAAAACCCAGCACCTCTTTCCCTCTTCTTCACCTATCTCTCTCAATCTACGTGTCTCCCTCAAAACTTAGTTCAAGACAGCTCTCATCCCACTCTGCTTTCTTTTGTATTCTCACTTTCTCAGGCCATGGCATTAAAAATTGTATTTTTGAGTTGGGTTCTTCTGGGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

161

Amino Acids

18.1

Weight (kDa)

6.1

Isoelectric Point (pI)

61.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022513)

Species Orthologous Gene IDs
prunus_persica Prupe.1G437700_v2.0.a1 Prupe.1G437700_v2.0.a1 Prupe.1G437700_v2.0.a1 Prupe.1G437700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AciI CCGC 1 cut(s) 185
AclWI GGATC 1 cut(s) 291
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 1 cut(s) 383
AluBI AGCT 2 cut(s) 213, 390
AluI AGCT 2 cut(s) 213, 390
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 3 cut(s) 125, 131, 368
AlwI GGATC 1 cut(s) 291
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 2 cut(s) 432, 475
AspS9I GGNCC 1 cut(s) 475
AsuHPI GGTGA 1 cut(s) 331
AvaI CYCGRG 1 cut(s) 169
BanII GRGCYC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 215
BccI CCATC 3 cut(s) 91, 113, 175
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BcoDI GTCTC 3 cut(s) 125, 131, 368
BfmI CTRYAG 1 cut(s) 284
BglII AGATCT 1 cut(s) 152
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 475
Bsa29I ATCGAT 1 cut(s) 295
BsaAI YACGTR 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 435
BseCI ATCGAT 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 3 cut(s) 83, 105, 394
BseMII CTCAG 2 cut(s) 287, 443
BseYI CCCAGC 1 cut(s) 316
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 434, 477
BshVI ATCGAT 1 cut(s) 295
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 169
BsmAI GTCTC 3 cut(s) 125, 131, 368
BsnI GGCC 2 cut(s) 434, 477
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 2 cut(s) 152, 296
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 1 cut(s) 185
BspANI GGCC 2 cut(s) 434, 477
BspCNI CTCAG 2 cut(s) 286, 442
BspDI ATCGAT 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 288
BspPI GGATC 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 2 cut(s) 152, 296
BssT1I CCWWGG 1 cut(s) 435
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 2 cut(s) 123, 338
BstBAI YACGTR 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 4 cut(s) 195, 273, 376, 429
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 3 cut(s) 83, 105, 394
BstKTI GATC 2 cut(s) 155, 299
BstMAI GTCTC 3 cut(s) 125, 131, 368
BstMBI GATC 2 cut(s) 152, 296
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
Bsu15I ATCGAT 1 cut(s) 295
BsuRI GGCC 2 cut(s) 434, 477
BsuTUI ATCGAT 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 435
BtsCI GGATG 3 cut(s) 83, 105, 394
BtsI GCAGTG 2 cut(s) 27, 230
BtsIMutI CAGTG 2 cut(s) 27, 230
Cac8I GCNNGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 475
ClaI ATCGAT 1 cut(s) 295
CviAII CATG 1 cut(s) 436
CviJI RGCY 7 cut(s) 188, 213, 290, 309, 390, 434, 477
CviKI_1 RGCY 7 cut(s) 188, 213, 290, 309, 390, 434, 477
DdeI CTNAG 4 cut(s) 195, 273, 376, 429
DpnI GATC 2 cut(s) 154, 298
DpnII GATC 2 cut(s) 152, 296
Eam1104I CTCTTC 2 cut(s) 123, 338
EarI CTCTTC 2 cut(s) 123, 338
Ecl136II GAGCTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 1 cut(s) 439
FaiI YATR 2 cut(s) 205, 437
FatI CATG 1 cut(s) 435
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 3 cut(s) 70, 92, 381
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 320
HaeIII GGCC 2 cut(s) 434, 477
Hin1II CATG 1 cut(s) 439
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 276, 482
Hpy188III TCNNGA 2 cut(s) 171, 383
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 2 cut(s) 20, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 4 cut(s) 195, 273, 376, 429
HpySE526I ACGT 1 cut(s) 359
Hsp92II CATG 1 cut(s) 439
Kzo9I GATC 2 cut(s) 152, 296
LpnPI CCDG 6 cut(s) 229, 272, 315, 330, 416, 458
MaeII ACGT 1 cut(s) 359
MalI GATC 2 cut(s) 154, 298
MboI GATC 2 cut(s) 152, 296
MboII GAAGA 8 cut(s) 93, 137, 140, 147, 259, 325, 328, 461
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 1 cut(s) 447
MnlI CCTC 8 cut(s) 47, 90, 136, 229, 282, 333, 341, 378
MseI TTAA 2 cut(s) 35, 443
MwoI GCNNNNNNNGC 1 cut(s) 287
NcoI CCATGG 1 cut(s) 435
NdeII GATC 2 cut(s) 152, 296
NlaIII CATG 1 cut(s) 439
PkrI GCNGC 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 475
PstI CTGCAG 1 cut(s) 288
PsuI RGATCY 1 cut(s) 152
SacI GAGCTC 1 cut(s) 215
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 35, 443
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 152, 296
Sau96I GGNCC 1 cut(s) 475
SduI GDGCHC 1 cut(s) 215
SetI ASST 5 cut(s) 215, 325, 344, 362, 392
SfcI CTRYAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 447
SsiI CCGC 1 cut(s) 185
SstI GAGCTC 1 cut(s) 215
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 362
TaqI TCGA 2 cut(s) 42, 295
TasI AATT 1 cut(s) 447
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 35, 443
Tru9I TTAA 2 cut(s) 35, 443
TscAI CASTG 2 cut(s) 27, 230
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 2 cut(s) 27, 230
XmiI GTMKAC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.