Prupe.1G437800_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
37288783 .. 37289712
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G437800.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 582 bp
ATGGCCAAGCCTAAGTGGTTATACGAGGAGTCTCGGCAGCAGAGCCTGGAGGAAAATAGGAAGAAAATGGCAGCACTCAATCTGCCTCAGCTTGCCCAGCTGGCTCATCCAGCCCCTGTGGAGCTCGCGAGGCCTCGTACGTTCGAGAAGCATCTTGTTCAGGTCCGGAGATCCACTCGCGTCTCGAATCATTCTTCCCCGGTTTACAAAGAGTTGGCAGAAGGGTTTGTGGAACCGAACAAACGCTTCTGCTCAGATGAAGCCAGAGCTGCCGCATTGCATGAAGCCCAGGAATTAGTGTCGGGTTTGGGATCCGATAACCCGACCATTGTGAAAACGATAGTCCCATCTTATATCAGTGGTGGATTCTTTCTGTGTCTTAAAAGACAGTTCTGCATGGAGAACCTCTCAAAGGGTGATGAAGTTATGACATTGGTAGATGTAGATGGCAACGAGTACCTGACTCGATACTTGGCCCAAAGATTTGGACTCTCTGCTGGATGGAAAGAATTTGCATTTGCTCATGATTTGGTGGAAGGGGATGCATTGGTTTTTCAATTGATCCGGCCTACTGCATTTAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

194

Amino Acids

21.93

Weight (kDa)

7.74

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 128, 180
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 1 cut(s) 273
AclWI GGATC 4 cut(s) 165, 306, 319, 556
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 509
AfaI GTAC 2 cut(s) 139, 458
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 1 cut(s) 557
AjnI CCWGG 2 cut(s) 45, 288
AluBI AGCT 4 cut(s) 91, 100, 124, 269
AluI AGCT 4 cut(s) 91, 100, 124, 269
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 2 cut(s) 36, 187
AlwI GGATC 4 cut(s) 165, 306, 319, 556
AlwNI CAGNNNCTG 2 cut(s) 46, 116
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 4 cut(s) 3, 131, 474, 566
ApeKI GCWGC 3 cut(s) 37, 71, 269
ApoI RAATTY 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 163, 475
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 428
AvaII GGWCC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 126
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 49, 83, 256
BccI CCATC 3 cut(s) 355, 440, 495
BciT130I CCWGG 2 cut(s) 47, 290
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 36, 187
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 4 cut(s) 38, 72, 270, 273
BlsI GCNGC 4 cut(s) 39, 73, 271, 274
Bme1390I CCNGG 3 cut(s) 47, 200, 290
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 475
BmiI GGNNCC 2 cut(s) 234, 313
BmrFI CCNGG 3 cut(s) 47, 200, 290
BmsI GCATC 2 cut(s) 160, 532
BplI GAGNNNNNCTC 4 cut(s) 160, 192, 392, 424
BpmI CTGGAG 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 198, 288
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 275
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 2 cut(s) 47, 290
BseDI CCNNGG 2 cut(s) 198, 288
BseGI GGATG 3 cut(s) 106, 506, 547
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 2 cut(s) 101, 267
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 49, 83, 256
BseYI CCCAGC 1 cut(s) 96
Bsh1236I CGCG 2 cut(s) 128, 180
BshFI GGCC 4 cut(s) 5, 133, 476, 568
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 3 cut(s) 166, 200, 565
BsiWI CGTACG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 36, 187
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 4 cut(s) 5, 133, 476, 568
Bsp1286I GDGCHC 1 cut(s) 126
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 3 cut(s) 170, 311, 561
Bsp68I TCGCGA 1 cut(s) 128
BspACI CCGC 1 cut(s) 273
BspANI GGCC 4 cut(s) 5, 133, 476, 568
BspCNI CTCAG 2 cut(s) 100, 266
BspEI TCCGGA 1 cut(s) 165
BspFNI CGCG 2 cut(s) 128, 180
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 234, 313
BspPI GGATC 4 cut(s) 165, 306, 319, 556
BsrDI GCAATG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 198, 288
BssMI GATC 3 cut(s) 170, 311, 561
Bst2UI CCWGG 2 cut(s) 47, 290
Bst4CI ACNGT 1 cut(s) 390
BstC8I GCNNGC 3 cut(s) 93, 102, 126
BstDEI CTNAG 3 cut(s) 12, 87, 253
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 3 cut(s) 106, 506, 547
BstFNI CGCG 2 cut(s) 128, 180
BstKTI GATC 3 cut(s) 173, 314, 564
BstMAI GTCTC 2 cut(s) 36, 187
BstMBI GATC 3 cut(s) 170, 311, 561
BstMWI GCNNNNNNNGC 5 cut(s) 97, 101, 110, 130, 269
BstNI CCWGG 2 cut(s) 47, 290
BstSCI CCNGG 3 cut(s) 45, 198, 288
BstUI CGCG 2 cut(s) 128, 180
BstV1I GCAGC 3 cut(s) 49, 83, 256
BstX2I RGATCY 2 cut(s) 170, 311
BstXI CCANNNNNNTGG 1 cut(s) 485
BstYI RGATCY 2 cut(s) 170, 311
BsuRI GGCC 4 cut(s) 5, 133, 476, 568
BtsCI GGATG 3 cut(s) 106, 506, 547
BtsIMutI CAGTG 1 cut(s) 364
BtuMI TCGCGA 1 cut(s) 128
Cac8I GCNNGC 3 cut(s) 93, 102, 126
CaiI CAGNNNCTG 2 cut(s) 46, 116
CciI TCATGA 1 cut(s) 523
Cfr13I GGNCC 2 cut(s) 163, 475
CseI GACGC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 138, 457
CviAII CATG 3 cut(s) 281, 397, 524
CviQI GTAC 2 cut(s) 138, 457
DdeI CTNAG 3 cut(s) 12, 87, 253
DpnI GATC 3 cut(s) 172, 313, 563
DpnII GATC 3 cut(s) 170, 311, 561
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 45, 288
EcoT22I ATGCAT 1 cut(s) 547
EcoT38I GRGCYC 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 3 cut(s) 284, 400, 527
FaiI YATR 6 cut(s) 22, 282, 354, 398, 428, 525
FaqI GGGAC 1 cut(s) 329
FatI CATG 3 cut(s) 280, 396, 523
Fnu4HI GCNGC 4 cut(s) 38, 72, 270, 273
FokI GGATG 3 cut(s) 93, 513, 554
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 4 cut(s) 38, 72, 270, 273
GluI GCNGC 4 cut(s) 38, 72, 270, 273
GsaI CCCAGC 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 4 cut(s) 5, 133, 476, 568
HapII CCGG 3 cut(s) 166, 200, 565
HgaI GACGC 1 cut(s) 169
Hin1II CATG 3 cut(s) 284, 400, 527
HinfI GANTC 5 cut(s) 29, 187, 366, 463, 489
HpaII CCGG 3 cut(s) 166, 200, 565
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 256, 316
Hpy188III TCNNGA 5 cut(s) 127, 145, 166, 184, 524
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 215, 530
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 5 cut(s) 280, 396, 515, 545, 575
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 101, 110, 130, 269
HpyF3I CTNAG 3 cut(s) 12, 87, 253
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 3 cut(s) 284, 400, 527
Kpn2I TCCGGA 1 cut(s) 165
Kzo9I GATC 3 cut(s) 170, 311, 561
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 3 cut(s) 49, 83, 256
LweI GCATC 2 cut(s) 160, 532
MaeII ACGT 1 cut(s) 140
MalI GATC 3 cut(s) 172, 313, 563
MboI GATC 3 cut(s) 170, 311, 561
MboII GAAGA 2 cut(s) 73, 186
MfeI CAATTG 1 cut(s) 557
MflI RGATCY 2 cut(s) 170, 311
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 293, 509, 557
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 38, 457, 483
MnlI CCTC 6 cut(s) 19, 43, 96, 123, 144, 416
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 547
MroI TCCGGA 1 cut(s) 165
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 381, 579
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 3 cut(s) 166, 200, 565
MspR9I CCNGG 3 cut(s) 47, 200, 290
MunI CAATTG 1 cut(s) 557
MvaI CCWGG 2 cut(s) 47, 290
MvnI CGCG 2 cut(s) 128, 180
MwoI GCNNNNNNNGC 5 cut(s) 97, 101, 110, 130, 269
NciI CCSGG 1 cut(s) 200
NdeII GATC 3 cut(s) 170, 311, 561
NlaIII CATG 3 cut(s) 284, 400, 527
NlaIV GGNNCC 2 cut(s) 234, 313
NmeAIII GCCGAG 1 cut(s) 13
NruI TCGCGA 1 cut(s) 128
NsiI ATGCAT 1 cut(s) 547
PagI TCATGA 1 cut(s) 523
PceI AGGCCT 1 cut(s) 133
PfeI GAWTC 2 cut(s) 187, 366
Pfl23II CGTACG 1 cut(s) 137
PkrI GCNGC 4 cut(s) 39, 73, 271, 274
PleI GAGTC 3 cut(s) 37, 457, 483
PpsI GAGTC 3 cut(s) 37, 457, 483
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 45, 288
PspFI CCCAGC 1 cut(s) 96
PspGI CCWGG 2 cut(s) 45, 288
PspLI CGTACG 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 234, 313
PspPI GGNCC 2 cut(s) 163, 475
PstNI CAGNNNCTG 2 cut(s) 46, 116
PsuI RGATCY 2 cut(s) 170, 311
PvuII CAGCTG 1 cut(s) 100
RruI TCGCGA 1 cut(s) 128
RsaI GTAC 2 cut(s) 139, 458
RsaNI GTAC 2 cut(s) 138, 457
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 381, 579
SatI GCNGC 4 cut(s) 38, 72, 270, 273
Sau3AI GATC 3 cut(s) 170, 311, 561
Sau96I GGNCC 2 cut(s) 163, 475
SchI GAGTC 3 cut(s) 38, 457, 483
ScrFI CCNGG 3 cut(s) 47, 200, 290
SduI GDGCHC 1 cut(s) 126
SetI ASST 8 cut(s) 93, 102, 126, 143, 165, 271, 408, 462
SfaNI GCATC 2 cut(s) 160, 532
SinI GGWCC 1 cut(s) 163
Sse9I AATT 3 cut(s) 293, 509, 557
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 1 cut(s) 273
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 3 cut(s) 45, 198, 288
TaaI ACNGT 1 cut(s) 390
TaiI ACGT 1 cut(s) 143
TaqI TCGA 3 cut(s) 144, 185, 466
TasI AATT 3 cut(s) 293, 509, 557
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 2 cut(s) 187, 366
Tru1I TTAA 2 cut(s) 381, 579
Tru9I TTAA 2 cut(s) 381, 579
TscAI CASTG 1 cut(s) 364
TseI GCWGC 3 cut(s) 37, 71, 269
TspDTI ATGAA 3 cut(s) 273, 297, 435
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 163
XagI CCTNNNNNAGG 1 cut(s) 410
XapI RAATTY 1 cut(s) 509
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.