Prupe.1G446100_v2.0.a1

histone deacetylase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
37745545 .. 37747281
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G446100.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 255 bp
ATGGCGAATCGTGAGCCACGTGAACCTTGGGGAGTTAAGGTAAAAAGTGGAGACTCTGTCGTTGTTGAGGCTGGAACTTGGGAGATCCTGTATCTTACAGAGGCTCATCTGGATGATGTCAAAAAAGCGAAGGGAAGTGATCCTATTGAACTCTATTTCACAATTACCGATGGGGAATTAGATGAGACTAATGTTTCGAAAACTATTCCTCCTGAATCATTTGAGAAACTTGTAATTTTGATGAGATTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.48

Weight (kDa)

4.8

Isoelectric Point (pI)

24.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 79, 134
AcvI CACGTG 1 cut(s) 20
AgsI TTSAA 2 cut(s) 149, 250
Alw26I GTCTC 2 cut(s) 45, 179
AlwI GGATC 2 cut(s) 79, 134
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AsuII TTCGAA 1 cut(s) 197
BbrPI CACGTG 1 cut(s) 20
BccI CCATC 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 45, 179
Bpu14I TTCGAA 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 26
BsaXI ACNNNNNCTCC 8 cut(s) 24, 42, 54, 72, 74, 104, 193, 223
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 118
BsmAI GTCTC 2 cut(s) 45, 179
Bsp119I TTCGAA 1 cut(s) 197
Bsp143I GATC 2 cut(s) 84, 139
BspPI GGATC 2 cut(s) 79, 134
BspT104I TTCGAA 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 2 cut(s) 84, 139
BssT1I CCWWGG 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 197
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 2 cut(s) 87, 142
BstMAI GTCTC 2 cut(s) 45, 179
BstMBI GATC 2 cut(s) 84, 139
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BtsCI GGATG 1 cut(s) 118
CviJI RGCY 3 cut(s) 16, 71, 104
CviKI_1 RGCY 3 cut(s) 16, 71, 104
DpnI GATC 2 cut(s) 86, 141
DpnII GATC 2 cut(s) 84, 139
Eco130I CCWWGG 1 cut(s) 26
Eco72I CACGTG 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FokI GGATG 1 cut(s) 125
HinfI GANTC 3 cut(s) 7, 53, 215
Hpy166II GTNNAC 1 cut(s) 23
Hpy188III TCNNGA 3 cut(s) 11, 110, 212
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 19
HpySE526I ACGT 1 cut(s) 19
Kzo9I GATC 2 cut(s) 84, 139
LpnPI CCDG 4 cut(s) 57, 95, 101, 225
MaeII ACGT 1 cut(s) 19
MalI GATC 2 cut(s) 86, 141
MboI GATC 2 cut(s) 84, 139
MflI RGATCY 1 cut(s) 84
MluCI AATT 3 cut(s) 162, 176, 234
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 3 cut(s) 61, 94, 219
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 111
NdeII GATC 2 cut(s) 84, 139
NspV TTCGAA 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PfeI GAWTC 2 cut(s) 7, 215
PflFI GACNNNGTC 1 cut(s) 56
PleI GAGTC 1 cut(s) 47
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
PpsI GAGTC 1 cut(s) 47
Ppu21I YACGTR 1 cut(s) 20
PspCI CACGTG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 84
PsyI GACNNNGTC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 2 cut(s) 84, 139
SchI GAGTC 1 cut(s) 47
SetI ASST 3 cut(s) 22, 28, 42
SfuI TTCGAA 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 3 cut(s) 162, 176, 234
StyI CCWWGG 1 cut(s) 26
TaiI ACGT 1 cut(s) 22
TaqI TCGA 1 cut(s) 197
TasI AATT 3 cut(s) 162, 176, 234
TfiI GAWTC 2 cut(s) 7, 215
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
Tth111I GACNNNGTC 1 cut(s) 56
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.