Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

38146474 .. 38148105

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G453800.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

CTCGCACTGGTTGCTGCTGCTTTACCTTTAGTACCTCAGCTGCTTTACTGGAACTCCATCCTGCCAAACAAACCGATGCCGAAAGCTCTCAGTGAACTAGTCCAACCTGGTCTGTCTTTGTATTTACAACCTCAGACTCAAGAGAGCTCTCTTATTCCACCGTTTTATTTAGGGACTTTGTCGGACCAGCCACTAACTGTCAGTTACCAAAAAGATGATGTTGCTGCCACTGACAACGTTTTCTTTGGTTACAACCAAGACGCTGCCACTGCCGCTGCTGACAAACTTTTCTTTGGTCACAATCAAAACGTTGTCACTGCTGCTGACAACATTTTCTTTGGTGACAACCATGAGGCTGCTGTTGGCAATCAACTCCTCAAAGACCCAACCCAAGAAGTTTTCTTCTTGGAGAAGGATGTGCAACCTGGCACAACCATGAAATATAGCTTAGCCAGAAATTCAACTAGGGCAACTTTCCTACACCGCAAAACTGCAGAATCGATCCCCTTCTCATCTACCAAACTGCCAGACATTCTCAACCAATTGTCACTTGTGAAACCAATCCTTAGAGGAGAAGAAAGATATTGCGCCACCTCTTTGGAGTCGATGGTTGACTTCACCACCTCCAAGCTGGGAAGAAATATTCAAGCAATCTCGGCAGAGGTCGAAAGGAAGGGAGCAACCATGCTGCAGAAGTATACAATAAAGCCTGGTGTGAAGAAGCTGGCAGGCAAAAGACTCATTGATGTCTTCTACTGCCATGCAATGGGGAAAACAAGGGCTTACATGGTGCCTCTGGAAGGTGCTGACGGGACGAGCGCTAAAGCAATCGTGGTCTGCCACGTAGACACATCTGTATGGCACCCAAAGAATTTTTCCCTGCAAGCACTCAATTGTAAACCAGGAACGGTTCCTGTCTGCCATTTTCTTCCCGACGCCCATATTGCCTGTCTTCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

321

Amino Acids

35.1

Weight (kDa)

8.17

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	790, 861
AccB7I	CCANNNNNTGG	1 cut(s)	766
AccI	GTMKAC	2 cut(s)	698, 846
AciI	CCGC	2 cut(s)	273, 484
AclI	AACGTT	2 cut(s)	237, 309
AclWI	GGATC	1 cut(s)	496
AcsI	RAATTY	2 cut(s)	457, 871
AcyI	GRCGYC	1 cut(s)	936
AfaI	GTAC	1 cut(s)	33
AfeI	AGCGCT	1 cut(s)	820
AfiI	CCNNNNNNNGG	2 cut(s)	766, 800
AgsI	TTSAA	2 cut(s)	462, 647
AhlI	ACTAGT	1 cut(s)	97
AjnI	CCWGG	4 cut(s)	106, 424, 709, 901
AjuI	GAANNNNNNNTTGG	2 cut(s)	859, 891
AluBI	AGCT	6 cut(s)	40, 86, 147, 447, 631, 724
AluI	AGCT	6 cut(s)	40, 86, 147, 447, 631, 724
Alw21I	GWGCWC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	496
Aor51HI	AGCGCT	1 cut(s)	820
ApeKI	GCWGC	9 cut(s)	14, 17, 40, 224, 263, 275, 320, 356, 688
ApoI	RAATTY	2 cut(s)	457, 871
AspLEI	GCGC	2 cut(s)	590, 821
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	353, 610
AvaII	GGWCC	1 cut(s)	184
BanI	GGYRCC	2 cut(s)	790, 861
BanII	GRGCYC	1 cut(s)	149
BbsI	GAAGAC	2 cut(s)	742, 944
Bbv12I	GWGCWC	1 cut(s)	149
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	8 cut(s)	4, 27, 211, 250, 262, 307, 343, 675
BccI	CCATC	2 cut(s)	65, 601
BciT130I	CCWGG	4 cut(s)	108, 426, 711, 903
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	3 cut(s)	98, 465, 961
BfmI	CTRYAG	2 cut(s)	492, 689
BfoI	RGCGCY	1 cut(s)	822
BlpI	GCTNAGC	1 cut(s)	448
Bme1390I	CCNGG	4 cut(s)	108, 426, 711, 903
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	3 cut(s)	792, 863, 912
BmrFI	CCNGG	4 cut(s)	108, 426, 711, 903
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	2 cut(s)	742, 944
Bpu10I	CCTNAGC	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	844
BsaHI	GRCGYC	1 cut(s)	936
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	766, 800
Bse1I	ACTGG	2 cut(s)	12, 53
Bse3DI	GCAATG	1 cut(s)	771
BseBI	CCWGG	4 cut(s)	108, 426, 711, 903
BseCI	ATCGAT	1 cut(s)	500
BseGI	GGATG	2 cut(s)	57, 421
BseLI	CCNNNNNNNGG	2 cut(s)	766, 800
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	3 cut(s)	50, 103, 146
BseNI	ACTGG	2 cut(s)	12, 53
BseRI	GAGGAG	2 cut(s)	365, 585
BseXI	GCAGC	8 cut(s)	4, 27, 211, 250, 262, 307, 343, 675
BseYI	CCCAGC	1 cut(s)	631
BshNI	GGYRCC	2 cut(s)	790, 861
BshVI	ATCGAT	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	187, 826
BslI	CCNNNNNNNGG	2 cut(s)	766, 800
BsmFI	GGGAC	2 cut(s)	187, 826
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	501
Bsp1720I	GCTNAGC	1 cut(s)	448
BspACI	CCGC	2 cut(s)	273, 484
BspCNI	CTCAG	3 cut(s)	49, 102, 145
BspDI	ATCGAT	1 cut(s)	500
BspLI	GGNNCC	3 cut(s)	792, 863, 912
BspMAI	CTGCAG	2 cut(s)	496, 693
BspPI	GGATC	1 cut(s)	496
BspT107I	GGYRCC	2 cut(s)	790, 861
BsrDI	GCAATG	1 cut(s)	771
BsrI	ACTGG	2 cut(s)	12, 53
BssMI	GATC	1 cut(s)	501
BssNAI	GTATAC	1 cut(s)	699
BssNI	GRCGYC	1 cut(s)	936
Bst1107I	GTATAC	1 cut(s)	699
Bst2UI	CCWGG	4 cut(s)	108, 426, 711, 903
Bst4CI	ACNGT	3 cut(s)	162, 199, 910
BstACI	GRCGYC	1 cut(s)	936
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	844
BstC8I	GCNNGC	3 cut(s)	726, 730, 885
BstDEI	CTNAG	5 cut(s)	36, 89, 132, 448, 566
BstENI	CCTNNNNNAGG	1 cut(s)	798
BstF5I	GGATG	2 cut(s)	57, 421
BstH2I	RGCGCY	1 cut(s)	822
BstHHI	GCGC	2 cut(s)	590, 821
BstKTI	GATC	1 cut(s)	504
BstMBI	GATC	1 cut(s)	501
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 269, 272, 656, 944
BstNI	CCWGG	4 cut(s)	108, 426, 711, 903
BstSCI	CCNGG	4 cut(s)	106, 424, 709, 901
BstSFI	CTRYAG	2 cut(s)	492, 689
BstV1I	GCAGC	8 cut(s)	4, 27, 211, 250, 262, 307, 343, 675
BstV2I	GAAGAC	2 cut(s)	742, 944
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstZ17I	GTATAC	1 cut(s)	699
Bsu15I	ATCGAT	1 cut(s)	500
BsuTUI	ATCGAT	1 cut(s)	500
BtsCI	GGATG	2 cut(s)	57, 421
BtsI	GCAGTG	2 cut(s)	267, 315
BtsIMutI	CAGTG	5 cut(s)	5, 97, 228, 267, 315
Cac8I	GCNNGC	3 cut(s)	726, 730, 885
CfoI	GCGC	2 cut(s)	590, 821
Cfr13I	GGNCC	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	500
CseI	GACGC	2 cut(s)	269, 944
CsiI	ACCWGGT	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	5 cut(s)	350, 436, 685, 761, 787
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	5 cut(s)	36, 89, 132, 448, 566
DpnI	GATC	1 cut(s)	503
DpnII	GATC	1 cut(s)	501
Ecl136II	GAGCTC	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	184
Eco47III	AGCGCT	1 cut(s)	820
Eco53kI	GAGCTC	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	798
EcoRII	CCWGG	4 cut(s)	106, 424, 709, 901
EcoT38I	GRGCYC	1 cut(s)	149
FaeI	CATG	5 cut(s)	353, 439, 688, 764, 790
FaiI	YATR	9 cut(s)	351, 437, 444, 686, 699, 762, 788, 859, 942
FaqI	GGGAC	2 cut(s)	187, 826
FatI	CATG	5 cut(s)	349, 435, 684, 760, 786
FblI	GTMKAC	2 cut(s)	698, 846
FokI	GGATG	2 cut(s)	44, 428
FriOI	GRGCYC	1 cut(s)	149
FspBI	CTAG	3 cut(s)	98, 465, 961
GlaI	GCGC	2 cut(s)	589, 820
GsaI	CCCAGC	1 cut(s)	635
HaeII	RGCGCY	1 cut(s)	822
HgaI	GACGC	2 cut(s)	269, 944
HhaI	GCGC	2 cut(s)	590, 821
Hin1I	GRCGYC	1 cut(s)	936
Hin1II	CATG	5 cut(s)	353, 439, 688, 764, 790
Hin6I	GCGC	2 cut(s)	588, 819
HinP1I	GCGC	2 cut(s)	588, 819
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	4 cut(s)	136, 497, 602, 738
HphI	GGTGA	2 cut(s)	353, 610
Hpy166II	GTNNAC	5 cut(s)	95, 613, 699, 847, 899
Hpy188I	TCNGA	2 cut(s)	135, 184
Hpy188III	TCNNGA	3 cut(s)	140, 797, 932
Hpy8I	GTNNAC	5 cut(s)	95, 613, 699, 847, 899
Hpy99I	CGWCG	1 cut(s)	938
HpyAV	CCTTC	4 cut(s)	406, 517, 667, 794
HpyCH4III	ACNGT	3 cut(s)	162, 199, 910
HpyCH4IV	ACGT	3 cut(s)	237, 309, 843
HpyCH4V	TGCA	5 cut(s)	421, 494, 691, 764, 883
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 269, 272, 656, 944
HpyF3I	CTNAG	5 cut(s)	36, 89, 132, 448, 566
HpySE526I	ACGT	3 cut(s)	237, 309, 843
Hsp92I	GRCGYC	1 cut(s)	936
Hsp92II	CATG	5 cut(s)	353, 439, 688, 764, 790
HspAI	GCGC	2 cut(s)	588, 819
Kzo9I	GATC	1 cut(s)	501
LmnI	GCTCC	1 cut(s)	677
Lsp1109I	GCAGC	8 cut(s)	4, 27, 211, 250, 262, 307, 343, 675
LweI	GCATC	1 cut(s)	66
MabI	ACCWGGT	1 cut(s)	106
MaeI	CTAG	3 cut(s)	98, 465, 961
MaeII	ACGT	3 cut(s)	237, 309, 843
MaeIII	GTNAC	6 cut(s)	203, 248, 296, 313, 341, 546
MalI	GATC	1 cut(s)	503
MboI	GATC	1 cut(s)	501
MboII	GAAGA	7 cut(s)	394, 587, 648, 730, 742, 920, 944
MfeI	CAATTG	2 cut(s)	542, 892
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	4 cut(s)	457, 542, 871, 892
MlyI	GAGTC	3 cut(s)	130, 611, 732
MmeI	TCCRAC	2 cut(s)	127, 162
MnlI	CCTC	9 cut(s)	45, 141, 346, 386, 563, 604, 634, 655, 804
MslI	CAYNNNNRTG	2 cut(s)	434, 856
MspA1I	CMGCKG	2 cut(s)	40, 275
MspR9I	CCNGG	4 cut(s)	108, 426, 711, 903
MunI	CAATTG	2 cut(s)	542, 892
MvaI	CCWGG	4 cut(s)	108, 426, 711, 903
MwoI	GCNNNNNNNGC	5 cut(s)	11, 269, 272, 656, 944
NdeII	GATC	1 cut(s)	501
NlaIII	CATG	5 cut(s)	353, 439, 688, 764, 790
NlaIV	GGNNCC	3 cut(s)	792, 863, 912
NmeAIII	GCCGAG	1 cut(s)	635
NmuCI	GTSAC	4 cut(s)	296, 313, 341, 546
PfeI	GAWTC	1 cut(s)	497
PflFI	GACNNNGTC	1 cut(s)	178
PflMI	CCANNNNNTGG	1 cut(s)	766
PleI	GAGTC	3 cut(s)	130, 610, 732
PpsI	GAGTC	3 cut(s)	130, 610, 732
Ppu21I	YACGTR	1 cut(s)	844
Psp124BI	GAGCTC	1 cut(s)	149
Psp1406I	AACGTT	2 cut(s)	237, 309
Psp6I	CCWGG	4 cut(s)	106, 424, 709, 901
PspFI	CCCAGC	1 cut(s)	631
PspGI	CCWGG	4 cut(s)	106, 424, 709, 901
PspN4I	GGNNCC	3 cut(s)	792, 863, 912
PspPI	GGNCC	1 cut(s)	184
PstI	CTGCAG	2 cut(s)	496, 693
PsyI	GACNNNGTC	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	40
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	2 cut(s)	434, 856
SacI	GAGCTC	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	501
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	3 cut(s)	130, 611, 732
ScrFI	CCNGG	4 cut(s)	108, 426, 711, 903
SduI	GDGCHC	1 cut(s)	149
SexAI	ACCWGGT	1 cut(s)	106
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	2 cut(s)	492, 689
SinI	GGWCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	2 cut(s)	434, 856
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
SpeI	ACTAGT	1 cut(s)	97
Sse9I	AATT	4 cut(s)	457, 542, 871, 892
SsiI	CCGC	2 cut(s)	273, 484
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	3 cut(s)	98, 465, 961
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	4 cut(s)	106, 424, 709, 901
TaaI	ACNGT	3 cut(s)	162, 199, 910
TaiI	ACGT	3 cut(s)	240, 312, 846
TaqI	TCGA	3 cut(s)	500, 605, 666
TasI	AATT	4 cut(s)	457, 542, 871, 892
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	497
TscAI	CASTG	5 cut(s)	12, 97, 235, 274, 322
TseFI	GTSAC	4 cut(s)	296, 313, 341, 546
TseI	GCWGC	9 cut(s)	14, 17, 40, 224, 263, 275, 320, 356, 688
Tsp45I	GTSAC	4 cut(s)	296, 313, 341, 546
TspDTI	ATGAA	1 cut(s)	452
TspRI	CASTG	5 cut(s)	12, 97, 235, 274, 322
Tth111I	GACNNNGTC	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	766
VpaK11BI	GGWCC	1 cut(s)	184
XagI	CCTNNNNNAGG	1 cut(s)	798
XapI	RAATTY	2 cut(s)	457, 871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628
XmiI	GTMKAC	2 cut(s)	698, 846
XspI	CTAG	3 cut(s)	98, 465, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.