Prupe.1G461500_v2.0.a1

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
38602718 .. 38603978
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G461500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 684 bp
ATGAACACCGGGGTATTATTTGGAAAATATTTCAAGGCCGTTGATGATGTGGCCATCCACGGAAGCAGCCGGGAGGGGTTGCCTACAGTTACTATCCTCATGGTCATGGAGGAGGTGACTTTGAATAACTATAATAATAAGAATATACCCCCATCGTTAGGTTTTCGAACAAGTGTTGAGGAACCATTATATTACAAGCTGCTTGGATTATTCTATCGTCCTAAATTTCCTTTTCATAAACCTCGTTCTGAGGGTGTGGACGGTTTGGACAGAGTGATGGTTAGGCTGGAAGAAGAGGTTAGATGTAGGGCATGTCTAATTTGTGGCGAGGCCCTTGATTCTCCTCCTCCTCTTGGAGAAGAAGAAGAAGATCATCGTCAACATCAACAAGAAGAAGGGGTGCCCAAGAAGATTAGTATGATTTCTCGCTTGCCTTGCTCACATCTTTTTCATCAAGATTGCATTGTGCGGCGGTGGCTGCATAGTAGGGGGAGGAGTCGCGGCGGCGGTTGTCCCGTGTGCCAATTGACAATGCTCGTTAAGGGCACAAAGGACATGCTCGCGAAATTTCAAACACCCTCGAGATCGTGGGGGTTGCCGCTCACGATATTTACCGGCGGCTTAATAACTGCCGGTTCGCTTCTTTGCAAATTATTGAAGCATCGATCATCAAAAGGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

228

Amino Acids

25.52

Weight (kDa)

9.03

Isoelectric Point (pI)

60.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AccBSI CCGCTC 1 cut(s) 601
AccII CGCG 2 cut(s) 501, 563
AciI CCGC 7 cut(s) 469, 472, 501, 504, 507, 599, 618
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 2 cut(s) 224, 566
AfiI CCNNNNNNNGG 2 cut(s) 158, 353
AgsI TTSAA 4 cut(s) 34, 124, 572, 658
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Ama87I CYCGRG 1 cut(s) 580
AoxI GGCC 3 cut(s) 36, 51, 330
ApeKI GCWGC 3 cut(s) 66, 199, 478
ApoI RAATTY 2 cut(s) 224, 566
AspS9I GGNCC 1 cut(s) 331
AsuC2I CCSGG 2 cut(s) 10, 71
AsuHPI GGTGA 1 cut(s) 127
AsuII TTCGAA 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 580
BaeGI GKGCMC 2 cut(s) 405, 548
BalI TGGCCA 1 cut(s) 53
BanI GGYRCC 1 cut(s) 400
BbvI GCAGC 3 cut(s) 78, 186, 465
BccI CCATC 3 cut(s) 62, 160, 271
BceAI ACGGC 1 cut(s) 23
BcnI CCSGG 2 cut(s) 10, 71
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 8 cut(s) 67, 200, 470, 479, 502, 505, 599, 619
BlsI GCNGC 8 cut(s) 68, 201, 471, 480, 503, 506, 600, 620
Bme1390I CCNGG 2 cut(s) 10, 71
BmeT110I CYCGRG 1 cut(s) 580
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 2 cut(s) 183, 402
BmrFI CCNGG 2 cut(s) 10, 71
BmsI GCATC 1 cut(s) 670
Bpu14I TTCGAA 1 cut(s) 166
BpuMI CCSGG 2 cut(s) 10, 71
Bsa29I ATCGAT 1 cut(s) 664
BsaJI CCNNGG 2 cut(s) 9, 58
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 353
Bse118I RCCGGY 2 cut(s) 614, 632
BseCI ATCGAT 1 cut(s) 664
BseDI CCNNGG 2 cut(s) 9, 58
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 158, 353
BseMII CTCAG 1 cut(s) 240
BseRI GAGGAG 5 cut(s) 125, 333, 336, 339, 508
BseSI GKGCMC 2 cut(s) 405, 548
BseXI GCAGC 3 cut(s) 78, 186, 465
Bsh1236I CGCG 2 cut(s) 501, 563
BshFI GGCC 3 cut(s) 38, 53, 332
BshNI GGYRCC 1 cut(s) 400
BshVI ATCGAT 1 cut(s) 664
BsiHKCI CYCGRG 1 cut(s) 580
BsiSI CCGG 4 cut(s) 9, 70, 615, 633
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 2 cut(s) 158, 353
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 3 cut(s) 38, 53, 332
BsoBI CYCGRG 1 cut(s) 580
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 405, 548
Bsp143I GATC 3 cut(s) 370, 584, 665
Bsp68I TCGCGA 1 cut(s) 563
BspACI CCGC 7 cut(s) 469, 472, 501, 504, 507, 599, 618
BspANI GGCC 3 cut(s) 38, 53, 332
BspCNI CTCAG 1 cut(s) 241
BspDI ATCGAT 1 cut(s) 664
BspFNI CGCG 2 cut(s) 501, 563
BspLI GGNNCC 2 cut(s) 183, 402
BspT104I TTCGAA 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 400
BsrBI CCGCTC 1 cut(s) 601
BsrFI RCCGGY 2 cut(s) 614, 632
BssAI RCCGGY 2 cut(s) 614, 632
BssECI CCNNGG 2 cut(s) 9, 58
BssMI GATC 3 cut(s) 370, 584, 665
Bst4CI ACNGT 2 cut(s) 88, 263
Bst6I CTCTTC 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 431, 561
BstDEI CTNAG 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 2 cut(s) 501, 563
BstKTI GATC 3 cut(s) 373, 587, 668
BstMBI GATC 3 cut(s) 370, 584, 665
BstMWI GCNNNNNNNGC 3 cut(s) 435, 475, 478
BstNSI RCATGY 2 cut(s) 315, 559
BstSCI CCNGG 2 cut(s) 8, 69
BstSFI CTRYAG 1 cut(s) 84
BstSLI GKGCMC 2 cut(s) 405, 548
BstUI CGCG 2 cut(s) 501, 563
BstV1I GCAGC 3 cut(s) 78, 186, 465
Bsu15I ATCGAT 1 cut(s) 664
BsuRI GGCC 3 cut(s) 38, 53, 332
BsuTUI ATCGAT 1 cut(s) 664
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 54
BtuMI TCGCGA 1 cut(s) 563
Cac8I GCNNGC 2 cut(s) 431, 561
Cfr10I RCCGGY 2 cut(s) 614, 632
Cfr13I GGNCC 1 cut(s) 331
ClaI ATCGAT 1 cut(s) 664
CviAII CATG 4 cut(s) 100, 106, 312, 556
CviJI RGCY 8 cut(s) 38, 53, 69, 199, 286, 332, 478, 621
CviKI_1 RGCY 8 cut(s) 38, 53, 69, 199, 286, 332, 478, 621
DdeI CTNAG 1 cut(s) 249
DpnI GATC 3 cut(s) 372, 586, 667
DpnII GATC 3 cut(s) 370, 584, 665
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 331
FaeI CATG 4 cut(s) 103, 109, 315, 559
FaqI GGGAC 1 cut(s) 498
FatI CATG 4 cut(s) 99, 105, 311, 555
Fnu4HI GCNGC 8 cut(s) 67, 200, 470, 479, 502, 505, 599, 619
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 8 cut(s) 67, 200, 470, 479, 502, 505, 599, 619
GluI GCNGC 8 cut(s) 67, 200, 470, 479, 502, 505, 599, 619
HaeIII GGCC 3 cut(s) 38, 53, 332
HapII CCGG 4 cut(s) 9, 70, 615, 633
Hin1II CATG 4 cut(s) 103, 109, 315, 559
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HinfI GANTC 2 cut(s) 338, 496
HpaII CCGG 4 cut(s) 9, 70, 615, 633
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 2 cut(s) 259, 380
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 4 cut(s) 455, 562, 582, 604
Hpy8I GTNNAC 2 cut(s) 259, 380
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 2 cut(s) 88, 263
HpyCH4V TGCA 3 cut(s) 462, 481, 648
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 475, 478
HpyF3I CTNAG 1 cut(s) 249
Hsp92II CATG 4 cut(s) 103, 109, 315, 559
Kzo9I GATC 3 cut(s) 370, 584, 665
LpnPI CCDG 5 cut(s) 22, 83, 272, 628, 646
Lsp1109I GCAGC 3 cut(s) 78, 186, 465
LweI GCATC 1 cut(s) 670
MaeIII GTNAC 2 cut(s) 88, 115
MalI GATC 3 cut(s) 372, 586, 667
MbiI CCGCTC 1 cut(s) 601
MboI GATC 3 cut(s) 370, 584, 665
MboII GAAGA 8 cut(s) 302, 305, 371, 374, 377, 380, 404, 421
MfeI CAATTG 1 cut(s) 524
MhlI GDGCHC 2 cut(s) 405, 548
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 6 cut(s) 224, 318, 524, 566, 650, 679
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 1 cut(s) 505
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
MseI TTAA 3 cut(s) 540, 623, 682
MslI CAYNNNNRTG 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 53
MspI CCGG 4 cut(s) 9, 70, 615, 633
MspR9I CCNGG 2 cut(s) 10, 71
MunI CAATTG 1 cut(s) 524
MvnI CGCG 2 cut(s) 501, 563
MwoI GCNNNNNNNGC 3 cut(s) 435, 475, 478
NciI CCSGG 2 cut(s) 10, 71
NdeII GATC 3 cut(s) 370, 584, 665
NlaIII CATG 4 cut(s) 103, 109, 315, 559
NlaIV GGNNCC 2 cut(s) 183, 402
NmuCI GTSAC 1 cut(s) 115
NruI TCGCGA 1 cut(s) 563
NspI RCATGY 2 cut(s) 315, 559
NspV TTCGAA 1 cut(s) 166
PaeR7I CTCGAG 1 cut(s) 580
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 8 cut(s) 68, 201, 471, 480, 503, 506, 600, 620
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
PspN4I GGNNCC 2 cut(s) 183, 402
PspPI GGNCC 1 cut(s) 331
RruI TCGCGA 1 cut(s) 563
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 3 cut(s) 540, 623, 682
SatI GCNGC 8 cut(s) 67, 200, 470, 479, 502, 505, 599, 619
Sau3AI GATC 3 cut(s) 370, 584, 665
Sau96I GGNCC 1 cut(s) 331
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 2 cut(s) 10, 71
SduI GDGCHC 2 cut(s) 405, 548
SetI ASST 5 cut(s) 117, 163, 201, 244, 300
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 84
Sfr274I CTCGAG 1 cut(s) 580
SfuI TTCGAA 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 580
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
Sse9I AATT 6 cut(s) 224, 318, 524, 566, 650, 679
SsiI CCGC 7 cut(s) 469, 472, 501, 504, 507, 599, 618
SspI AATATT 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 8, 69
TaaI ACNGT 2 cut(s) 88, 263
TaqI TCGA 3 cut(s) 166, 581, 664
TasI AATT 6 cut(s) 224, 318, 524, 566, 650, 679
TauI GCSGC 5 cut(s) 472, 504, 507, 601, 621
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 3 cut(s) 540, 623, 682
Tru9I TTAA 3 cut(s) 540, 623, 682
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 3 cut(s) 66, 199, 478
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 3 cut(s) 17, 224, 440
TspGWI ACGGA 1 cut(s) 75
XapI RAATTY 2 cut(s) 224, 566
XceI RCATGY 2 cut(s) 315, 559
XhoI CTCGAG 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.