Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

38747941 .. 38748449

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G464400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAGGAGAGTATGGTTGTTCTCCATCTTCATCGTCTTTAACAACAAGCATAGAGAAGCGCAAGCAGAGGCAAAACCAGCAGCAACAGCAACAAGTAGGAGGCAACCATGATCATCGTCATCAAGAAAAGCAATACAGAGGGATAAGGATGAGGAAGTGGGTGGCTGAGATTAAAGAACCTAACAAAAGGTCTCGAATCTGGCTTGGTTCTTACACGACGCTGGTTGCTACCGCCAGAGCATATGACACCGCCGTTTTCTACCTCAGATGCCCTTCTGCGCGCCTCAACTTCCCAGAACTTAAGGCTACGGAGGTTGGGGAAAAGGTCGACGCCGTCGAAACTGCTCACCGCTCACCAATATCACAGTCAAAAACAACGTCGAGCCTGGTGAATTTCCATAAGCTTGATTTAAATAAGTATCTCGACCCAGAAAACTCTAATGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

151

Amino Acids

17.24

Weight (kDa)

9.42

Isoelectric Point (pI)

60.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	1 cut(s)	283
AciI	CCGC	3 cut(s)	234, 252, 352
AcsI	RAATTY	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	333
AflII	CTTAAG	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	394
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspLEI	GCGC	3 cut(s)	63, 283, 285
AsuHPI	GGTGA	3 cut(s)	341, 348, 403
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	2 cut(s)	239, 320
BciT130I	CCWGG	1 cut(s)	389
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	389
BseGI	GGATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	159, 280
BsePI	GCGCGC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	198
Bso31I	GGTCTC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	3 cut(s)	234, 252, 352
BspCNI	CTCAG	2 cut(s)	160, 279
BspFNI	CGCG	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	354
BssHII	GCGCGC	1 cut(s)	281
BssMI	GATC	1 cut(s)	112
BssNI	GRCGYC	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	333
BstAFI	CTTAAG	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	65, 283
BstDEI	CTNAG	2 cut(s)	168, 266
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	283
BstHHI	GCGC	3 cut(s)	63, 283, 285
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 88
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	65, 283
CfoI	GCGC	3 cut(s)	63, 283, 285
CseI	GACGC	2 cut(s)	229, 341
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	5 cut(s)	167, 205, 308, 387, 406
CviKI_1	RGCY	5 cut(s)	167, 205, 308, 387, 406
DdeI	CTNAG	2 cut(s)	168, 266
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
DraI	TTTAAA	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	387
FaeI	CATG	1 cut(s)	113
FaiI	YATR	6 cut(s)	15, 53, 111, 244, 246, 402
FatI	CATG	1 cut(s)	109
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	83
GlaI	GCGC	3 cut(s)	62, 282, 284
GluI	GCNGC	1 cut(s)	83
HgaI	GACGC	2 cut(s)	229, 341
HhaI	GCGC	3 cut(s)	63, 283, 285
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	3 cut(s)	61, 281, 283
HinP1I	GCGC	3 cut(s)	61, 281, 283
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	1 cut(s)	198
HphI	GGTGA	3 cut(s)	341, 348, 403
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	3 cut(s)	125, 195, 425
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	4 cut(s)	223, 335, 341, 385
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 88
HpyF3I	CTNAG	2 cut(s)	168, 266
HpySE526I	ACGT	1 cut(s)	380
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	3 cut(s)	61, 281, 283
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	8 cut(s)	92, 187, 209, 250, 309, 374, 401, 444
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	260
MaeII	ACGT	1 cut(s)	380
MalI	GATC	1 cut(s)	114
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	21
MluCI	AATT	2 cut(s)	394, 448
MnlI	CCTC	7 cut(s)	63, 95, 134, 147, 275, 296, 307
MseI	TTAA	5 cut(s)	41, 174, 303, 413, 451
MspCI	CTTAAG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	2 cut(s)	79, 88
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	1 cut(s)	113
PauI	GCGCGC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	198
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	335
PteI	GCGCGC	1 cut(s)	281
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	5 cut(s)	41, 174, 303, 413, 451
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	389
SetI	ASST	7 cut(s)	184, 194, 267, 318, 330, 383, 408
SfaNI	GCATC	1 cut(s)	260
SmiI	ATTTAAAT	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	394, 448
SsiI	CCGC	3 cut(s)	234, 252, 352
StyD4I	CCNGG	1 cut(s)	387
SwaI	ATTTAAAT	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	5 cut(s)	196, 330, 339, 383, 426
TasI	AATT	2 cut(s)	394, 448
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	5 cut(s)	41, 174, 303, 413, 451
Tru9I	TTAA	5 cut(s)	41, 174, 303, 413, 451
TseI	GCWGC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	1 cut(s)	326
Tth111I	GACNNNGTC	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.