Prupe.1G474200_v2.0.a1

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
39399097 .. 39405193
6097 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G474200.1_v2.0.a1.CDS.5

Sequence Viewer

Length: 1233 bp
ACGTTGTTTAATTGGGTTGGTAACCGCGACTTTCCCTTATTAGATTCATCCGCCCTACTTCAAATCCGGTCCGGGAATTTGATTCTCACGGACCGGCGACAAGTGCAGAGCATAGTCAATTCAGGAAATGTCGCCACAACTAGTAATACAAGTATCATATGGCAAAGTTTTGACGCTCCAAGTGATACTTATCTTCCTGGGATGAAGCTTGGGTCGTTTAACCTAAACACAGACCACCAAAACCTTCAAGTTGTTAATTCTTGGGCAAGCCACCAAAACCCAGCTCGTGGCCTCTACACCTTATCCATCGATTCCAGCGACCTAACAAAGCTTTCGGTTTGGCGAGGAGATGGAGTCAAAATGAACTCAAACGGTAGTACTAACGACTACAACTTTAGCCTCCAGTTCAATAGAAATGAGGCCTTCTACACTTTCAGCAGCAGCAAGAATTACGACCTCATGTGGTTGGTGATGAATTCCACAGGAAACCTCGACCAGAATTTTATGTTGAAAGGCAAGATTTATTCTGTGAGTCATCCTTTGTGTGCGGGTTCCAATGGTGGTAATAACGGGACGTGCTTGCCTTCAGTACCATCCCAGTGTAGGGATGGAGGTGCTTTTTCTGAGATGAATGGTTCGCTGCCATCTACATCTGCTGGTTCCGGTGGAAGTATTGGGATTTCCGAATGCCAAACGTTGTGCCAGGTCAATTGTTCTTGCACCGCATTTGCTTCAGTTCAGAATGAATCAGAAAAAGGGGATTTAATCTTTTTTTCTACAATAAAGGCGGCAACAAGTGACTTTGCCAAGGCCAATAAACTTGGGGAAGGTGGATTTGGGCCTGGCATGTTGCTTCCAGAAGGACAAGAAATTGCAGTGAAAAGGCTGCTCCAGCACAGGAATTTGGTTAGGCTTTTGGGATGTTGCATTGAAGCAGAAGAAAGTATACTAATTTATGAGTACATGCCCAACAAAAGCCTGGATTCTTTCATTTTCGATTCAACCAAACGGGTGCTTTTGGATTGGAGAAAGCGCATGAACATTATAGAAGGGATTGCTCAAGGTCTTCTGTATCTTCATAAATACTCAAGATTACGGATCATTCACCGCGATATGAAGACCAGTAATATTCTGTTGGACTGTGACATGAACCCAAAAATATCTGATTTTGGCATGGCACGAATTTTCGGGGATAATGACACCAGGGGACAAACAAATCGGGTTGTTGGTACA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

411

Amino Acids

45.26

Weight (kDa)

6.93

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 287
AccI GTMKAC 1 cut(s) 946
AccII CGCG 2 cut(s) 27, 1110
AciI CCGC 6 cut(s) 25, 51, 548, 723, 788, 1108
AclI AACGTT 1 cut(s) 695
AclWI GGATC 1 cut(s) 1106
AcsI RAATTY 5 cut(s) 76, 475, 499, 901, 1182
AcuI CTGAAG 2 cut(s) 570, 717
AfaI GTAC 4 cut(s) 379, 591, 962, 1231
AfiI CCNNNNNNNGG 3 cut(s) 287, 603, 604
AgsI TTSAA 6 cut(s) 62, 248, 409, 511, 932, 1002
AhlI ACTAGT 1 cut(s) 140
AjiI CACGTC 1 cut(s) 576
AjnI CCWGG 5 cut(s) 196, 702, 841, 978, 1202
AjuI GAANNNNNNNTTGG 2 cut(s) 819, 851
AluBI AGCT 3 cut(s) 208, 284, 331
AluI AGCT 3 cut(s) 208, 284, 331
AlwI GGATC 1 cut(s) 1106
AoxI GGCC 4 cut(s) 289, 420, 810, 839
ApeKI GCWGC 4 cut(s) 438, 441, 640, 886
ApoI RAATTY 5 cut(s) 76, 475, 499, 901, 1182
AspLEI GCGC 1 cut(s) 1035
AspS9I GGNCC 3 cut(s) 69, 91, 839
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 481, 1097
AvaII GGWCC 2 cut(s) 69, 91
BarI GAAGNNNNNNTAC 2 cut(s) 930, 962
BauI CACGAG 1 cut(s) 285
BbsI GAAGAC 2 cut(s) 1058, 1124
BbvI GCAGC 4 cut(s) 450, 453, 627, 873
BccI CCATC 5 cut(s) 314, 344, 601, 602, 652
BciT130I CCWGG 5 cut(s) 198, 704, 843, 980, 1204
BcnI CCSGG 1 cut(s) 73
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 1 cut(s) 141
BisI GCNGC 5 cut(s) 439, 442, 641, 789, 887
BlsI GCNGC 5 cut(s) 440, 443, 642, 790, 888
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 6 cut(s) 73, 198, 704, 843, 980, 1204
Bme18I GGWCC 2 cut(s) 69, 91
BmgBI CACGTC 1 cut(s) 576
BmgT120I GGNCC 3 cut(s) 69, 91, 839
BmiI GGNNCC 2 cut(s) 553, 661
BmrFI CCNGG 6 cut(s) 73, 198, 704, 843, 980, 1204
BmrI ACTGGG 1 cut(s) 592
BmuI ACTGGG 1 cut(s) 592
BpiI GAAGAC 2 cut(s) 1058, 1124
BpmI CTGGAG 2 cut(s) 386, 875
BpuEI CTTGAG 2 cut(s) 1044, 1072
BpuMI CCSGG 1 cut(s) 73
Bsa29I ATCGAT 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 197, 807, 1203
BsaWI WCCGGW 2 cut(s) 66, 662
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 603, 604
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 3 cut(s) 403, 598, 1122
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 5 cut(s) 198, 704, 843, 980, 1204
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 197, 807, 1203
BseGI GGATG 6 cut(s) 47, 207, 535, 593, 613, 926
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 3 cut(s) 287, 603, 604
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 3 cut(s) 403, 598, 1122
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 4 cut(s) 450, 453, 627, 873
BseYI CCCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 125
Bsh1236I CGCG 2 cut(s) 27, 1110
BshFI GGCC 4 cut(s) 291, 422, 812, 841
BshVI ATCGAT 1 cut(s) 309
BsiSI CCGG 4 cut(s) 67, 72, 94, 663
BslFI GGGAC 2 cut(s) 586, 1221
BslI CCNNNNNNNGG 3 cut(s) 287, 603, 604
BsmFI GGGAC 2 cut(s) 586, 1221
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 4 cut(s) 291, 422, 812, 841
Bsp143I GATC 1 cut(s) 1098
BspACI CCGC 6 cut(s) 25, 51, 548, 723, 788, 1108
BspANI GGCC 4 cut(s) 291, 422, 812, 841
BspCNI CTCAG 1 cut(s) 616
BspDI ATCGAT 1 cut(s) 309
BspFNI CGCG 2 cut(s) 27, 1110
BspLI GGNNCC 2 cut(s) 553, 661
BspPI GGATC 1 cut(s) 1106
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 3 cut(s) 403, 598, 1122
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 3 cut(s) 197, 807, 1203
BssMI GATC 1 cut(s) 1098
BssNAI GTATAC 1 cut(s) 947
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 807
Bst1107I GTATAC 1 cut(s) 947
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 5 cut(s) 198, 704, 843, 980, 1204
Bst4CI ACNGT 2 cut(s) 374, 1142
BstC8I GCNNGC 2 cut(s) 268, 581
BstDEI CTNAG 1 cut(s) 624
BstEII GGTNACC 1 cut(s) 20
BstF5I GGATG 6 cut(s) 47, 207, 535, 593, 613, 926
BstFNI CGCG 2 cut(s) 27, 1110
BstHHI GCGC 1 cut(s) 1035
BstKTI GATC 1 cut(s) 1101
BstMBI GATC 1 cut(s) 1098
BstMWI GCNNNNNNNGC 2 cut(s) 103, 892
BstNI CCWGG 5 cut(s) 198, 704, 843, 980, 1204
BstNSI RCATGY 2 cut(s) 850, 967
BstPI GGTNACC 1 cut(s) 20
BstSCI CCNGG 6 cut(s) 71, 196, 702, 841, 978, 1202
BstUI CGCG 2 cut(s) 27, 1110
BstV1I GCAGC 4 cut(s) 450, 453, 627, 873
BstV2I GAAGAC 2 cut(s) 1058, 1124
BstZ17I GTATAC 1 cut(s) 947
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 4 cut(s) 291, 422, 812, 841
BsuTUI ATCGAT 1 cut(s) 309
BtrI CACGTC 1 cut(s) 576
BtsCI GGATG 6 cut(s) 47, 207, 535, 593, 613, 926
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 2 cut(s) 605, 882
Cac8I GCNNGC 2 cut(s) 268, 581
CfoI GCGC 1 cut(s) 1035
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 3 cut(s) 69, 91, 839
ClaI ATCGAT 1 cut(s) 309
CpoI CGGWCCG 2 cut(s) 69, 91
CseI GACGC 1 cut(s) 182
Csp6I GTAC 4 cut(s) 378, 590, 961, 1230
CspI CGGWCCG 2 cut(s) 69, 91
CviAII CATG 6 cut(s) 460, 847, 964, 1036, 1147, 1174
CviQI GTAC 4 cut(s) 378, 590, 961, 1230
DdeI CTNAG 1 cut(s) 624
DpnI GATC 1 cut(s) 1100
DpnII GATC 1 cut(s) 1098
EciI GGCGGA 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 807
Eco147I AGGCCT 1 cut(s) 422
Eco47I GGWCC 2 cut(s) 69, 91
Eco57I CTGAAG 2 cut(s) 570, 717
Eco91I GGTNACC 1 cut(s) 20
EcoO65I GGTNACC 1 cut(s) 20
EcoRI GAATTC 1 cut(s) 475
EcoRII CCWGG 5 cut(s) 196, 702, 841, 978, 1202
EcoT14I CCWWGG 1 cut(s) 807
ErhI CCWWGG 1 cut(s) 807
FaeI CATG 6 cut(s) 463, 850, 967, 1039, 1150, 1177
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FaqI GGGAC 2 cut(s) 586, 1221
FatI CATG 6 cut(s) 459, 846, 963, 1035, 1146, 1173
FauI CCCGC 1 cut(s) 541
FauNDI CATATG 1 cut(s) 158
FblI GTMKAC 1 cut(s) 946
Fnu4HI GCNGC 5 cut(s) 439, 442, 641, 789, 887
FokI GGATG 6 cut(s) 34, 214, 522, 580, 620, 933
Fsp4HI GCNGC 5 cut(s) 439, 442, 641, 789, 887
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 1034
GluI GCNGC 5 cut(s) 439, 442, 641, 789, 887
GsaI CCCAGC 1 cut(s) 284
GsuI CTGGAG 2 cut(s) 386, 875
HaeIII GGCC 4 cut(s) 291, 422, 812, 841
HapII CCGG 4 cut(s) 67, 72, 94, 663
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 1035
Hin1II CATG 6 cut(s) 463, 850, 967, 1039, 1150, 1177
Hin6I GCGC 1 cut(s) 1033
HinP1I GCGC 1 cut(s) 1033
HindIII AAGCTT 2 cut(s) 206, 329
HinfI GANTC 8 cut(s) 44, 82, 311, 354, 532, 746, 983, 998
HpaII CCGG 4 cut(s) 67, 72, 94, 663
HphI GGTGA 2 cut(s) 481, 1097
Hpy166II GTNNAC 1 cut(s) 947
Hpy188I TCNGA 5 cut(s) 625, 685, 741, 751, 1165
Hpy188III TCNNGA 3 cut(s) 123, 857, 1089
Hpy8I GTNNAC 1 cut(s) 947
HpyAV CCTTC 6 cut(s) 254, 433, 594, 821, 854, 1043
HpyCH4III ACNGT 2 cut(s) 374, 1142
HpyCH4IV ACGT 3 cut(s) 2, 575, 695
HpyCH4V TGCA 4 cut(s) 106, 720, 875, 927
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 892
HpyF3I CTNAG 1 cut(s) 624
HpySE526I ACGT 3 cut(s) 2, 575, 695
Hsp92II CATG 6 cut(s) 463, 850, 967, 1039, 1150, 1177
HspAI GCGC 1 cut(s) 1033
Kzo9I GATC 1 cut(s) 1098
LmnI GCTCC 2 cut(s) 181, 894
Lsp1109I GCAGC 4 cut(s) 450, 453, 627, 873
MaeI CTAG 1 cut(s) 141
MaeII ACGT 3 cut(s) 2, 575, 695
MaeIII GTNAC 3 cut(s) 20, 797, 1142
MalI GATC 1 cut(s) 1100
MboI GATC 1 cut(s) 1098
MboII GAAGA 5 cut(s) 185, 950, 1058, 1067, 1129
MfeI CAATTG 1 cut(s) 709
MlyI GAGTC 2 cut(s) 363, 541
MmeI TCCRAC 1 cut(s) 1116
MnlI CCTC 7 cut(s) 302, 338, 410, 412, 467, 500, 605
MseI TTAA 4 cut(s) 9, 219, 255, 764
MslI CAYNNNNRTG 1 cut(s) 598
MspI CCGG 4 cut(s) 67, 72, 94, 663
MspR9I CCNGG 6 cut(s) 73, 198, 704, 843, 980, 1204
MunI CAATTG 1 cut(s) 709
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 5 cut(s) 198, 704, 843, 980, 1204
MvnI CGCG 2 cut(s) 27, 1110
MwoI GCNNNNNNNGC 2 cut(s) 103, 892
NciI CCSGG 1 cut(s) 73
NdeI CATATG 1 cut(s) 158
NdeII GATC 1 cut(s) 1098
NlaIII CATG 6 cut(s) 463, 850, 967, 1039, 1150, 1177
NlaIV GGNNCC 2 cut(s) 553, 661
NmuCI GTSAC 2 cut(s) 797, 1142
NspI RCATGY 2 cut(s) 850, 967
PceI AGGCCT 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 1 cut(s) 692
PfeI GAWTC 6 cut(s) 44, 82, 311, 746, 983, 998
PflMI CCANNNNNTGG 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 71
PkrI GCNGC 5 cut(s) 440, 443, 642, 790, 888
PleI GAGTC 2 cut(s) 362, 540
PpsI GAGTC 2 cut(s) 362, 540
Psp1406I AACGTT 1 cut(s) 695
Psp6I CCWGG 5 cut(s) 196, 702, 841, 978, 1202
PspEI GGTNACC 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 280
PspGI CCWGG 5 cut(s) 196, 702, 841, 978, 1202
PspN4I GGNNCC 2 cut(s) 553, 661
PspPI GGNCC 3 cut(s) 69, 91, 839
RsaI GTAC 4 cut(s) 379, 591, 962, 1231
RsaNI GTAC 4 cut(s) 378, 590, 961, 1230
RseI CAYNNNNRTG 1 cut(s) 598
Rsr2I CGGWCCG 2 cut(s) 69, 91
RsrII CGGWCCG 2 cut(s) 69, 91
SaqAI TTAA 4 cut(s) 9, 219, 255, 764
SatI GCNGC 5 cut(s) 439, 442, 641, 789, 887
Sau3AI GATC 1 cut(s) 1098
Sau96I GGNCC 3 cut(s) 69, 91, 839
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 2 cut(s) 363, 541
ScrFI CCNGG 6 cut(s) 73, 198, 704, 843, 980, 1204
SinI GGWCC 2 cut(s) 69, 91
SmiMI CAYNNNNRTG 1 cut(s) 598
SmlI CTYRAG 2 cut(s) 1059, 1087
SmoI CTYRAG 2 cut(s) 1059, 1087
SpeI ACTAGT 1 cut(s) 140
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 6 cut(s) 25, 51, 548, 723, 788, 1108
SspI AATATT 1 cut(s) 1129
SspMI CTAG 1 cut(s) 141
StuI AGGCCT 1 cut(s) 422
StyD4I CCNGG 6 cut(s) 71, 196, 702, 841, 978, 1202
StyI CCWWGG 1 cut(s) 807
TaaI ACNGT 2 cut(s) 374, 1142
TaiI ACGT 2 cut(s) 578, 698
TaqI TCGA 3 cut(s) 309, 492, 996
TatI WGTACW 2 cut(s) 377, 960
TauI GCSGC 1 cut(s) 791
TfiI GAWTC 6 cut(s) 44, 82, 311, 746, 983, 998
Tru1I TTAA 4 cut(s) 9, 219, 255, 764
Tru9I TTAA 4 cut(s) 9, 219, 255, 764
TscAI CASTG 2 cut(s) 605, 882
TseFI GTSAC 2 cut(s) 797, 1142
TseI GCWGC 4 cut(s) 438, 441, 640, 886
Tsp45I GTSAC 2 cut(s) 797, 1142
TspGWI ACGGA 2 cut(s) 104, 1111
TspRI CASTG 2 cut(s) 605, 882
Van91I CCANNNNNTGG 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 69, 91
XapI RAATTY 5 cut(s) 76, 475, 499, 901, 1182
XceI RCATGY 2 cut(s) 850, 967
XcmI CCANNNNNNNNNTGG 2 cut(s) 605, 976
XmiI GTMKAC 1 cut(s) 946
XspI CTAG 1 cut(s) 141
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.