Prupe.1G497600_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
41215469 .. 41218787
3319 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G497600.1_v2.0.a1.CDS.5

Sequence Viewer

Length: 1053 bp
ATGGACTCTCCTACAATTCCTATCAAAGCTATCGTTTCTCTATTTTGCTCATGTATGCTTTTGTCGCATATCACCACTTTGAGCCCTGCCTTGGCTTTGGAAGACTGTGAGTTTCCAGCCATCTTTAACTTTGGAGATTCAAATTCAGATACTGGTGCATATGCATCCTTTCTTCCACTACCACCACCTTATGGGGAGACCTATTTTCATATGCCGGTTGGAAGATTCTCAGATGGCAGGCTCATAATCGATTTTCTTGCTGGTGGTGGATTTAGTCCCTTCTACCTCAATATTCAGTACATGCAGTTCTTGCAACTAAAATCCATATCACAACTCATCAGGCATCAAGGGGGAATATTTGCAAGTTTGATGCCCAAGGAGTCGAATTTTTCCAAAGCTTTATACACATTTGACATTGGCCAGAATGACCTAGCAGAAGGGTTCTCTGATAACTTGACTGTTCAACAAGTCAATGCATCTGTTCCTGATATAATCAGTGGGTTCTCGGCAAATATTAAGAAAATATACGATTTGGGAGCGAGATCATTTTGGATCCACAACACTGGGCCAATTGGCTGTCTCCCTACCATCTTAGCCAATTTCCCAGCTCAAAAGGATGAGGCTGGCTGTGCAAAGTCATATAATGAAGTAGCTCAGCATTTTAACCAGAAGCTGAAGGAAGCCACAGTTCAACTTAGGAAAGATCTACCTTTGGCTGCAATTACTTATGTGGACGTCTATTCAGTTAAATACTCTCTTTTCAAGGAACCCCAAAAATATGGGTTTGAGCTCCCACTTGTTGCTTGTTGTGGGTATGGTGGCAAGTACAACTATAACAGTAGTTCTAGTTGTGGAGGAACAGCTAGAGTTAATGGAAGCCAAATATTTGTTGGCTCATGCAAAGATCCTTCGGTGAGAGTGAATTGGGATGGCACTCATTATACTGAGGCAGCTGCCAAGTTTATTTCTGATAAAATTTCAACTGGAGCATTTTCTGATCCACCCCTTGCTTTTAAACAAGCATGTCACAAGAGTACTTGGCCTAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005488 GO:0006950 GO:0006952 GO:0008150 GO:0016787 GO:0016788 GO:0019863 GO:0019865 GO:0044877 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

351

Amino Acids

38.33

Weight (kDa)

6.38

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 738
AccB7I CCANNNNNTGG 1 cut(s) 191
AclWI GGATC 4 cut(s) 547, 560, 899, 992
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 3 cut(s) 142, 385, 975
AcuI CTGAAG 1 cut(s) 695
AcyI GRCGYC 1 cut(s) 735
AfaI GTAC 3 cut(s) 299, 827, 1036
AfiI CCNNNNNNNGG 2 cut(s) 91, 191
AgsI TTSAA 5 cut(s) 141, 464, 692, 763, 981
AluBI AGCT 8 cut(s) 29, 398, 608, 653, 673, 790, 863, 953
AluI AGCT 8 cut(s) 29, 398, 608, 653, 673, 790, 863, 953
Alw21I GWGCWC 1 cut(s) 792
Alw26I GTCTC 2 cut(s) 191, 584
AlwI GGATC 4 cut(s) 547, 560, 899, 992
AlwNI CAGNNNCTG 2 cut(s) 152, 673
AoxI GGCC 3 cut(s) 418, 566, 1040
ApeKI GCWGC 3 cut(s) 716, 950, 953
ApoI RAATTY 3 cut(s) 142, 385, 975
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 64, 925
BalI TGGCCA 1 cut(s) 420
BamHI GGATCC 1 cut(s) 552
BanII GRGCYC 2 cut(s) 86, 792
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 792
BbvI GCAGC 3 cut(s) 703, 940, 962
BccI CCATC 4 cut(s) 128, 227, 596, 923
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BcoDI GTCTC 2 cut(s) 191, 584
BfaI CTAG 3 cut(s) 431, 846, 864
BglII AGATCT 1 cut(s) 703
BisI GCNGC 3 cut(s) 717, 951, 954
BlpI GCTNAGC 1 cut(s) 654
BlsI GCNGC 3 cut(s) 718, 952, 955
BmcAI AGTACT 1 cut(s) 1036
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 2 cut(s) 554, 768
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 4 cut(s) 173, 352, 360, 485
BmuI ACTGGG 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 1005
Bpu1102I GCTNAGC 1 cut(s) 654
Bsa29I ATCGAT 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 90, 375
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 191
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 3 cut(s) 157, 568, 988
BseCI ATCGAT 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 90, 375
BseGI GGATG 3 cut(s) 164, 622, 934
BseLI CCNNNNNNNGG 2 cut(s) 91, 191
BseMII CTCAG 3 cut(s) 243, 668, 936
BseNI ACTGG 3 cut(s) 157, 568, 988
BseXI GCAGC 3 cut(s) 703, 940, 962
BseYI CCCAGC 1 cut(s) 604
BshFI GGCC 3 cut(s) 420, 568, 1042
BshVI ATCGAT 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 792
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 91, 191
BsmAI GTCTC 2 cut(s) 191, 584
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 3 cut(s) 420, 568, 1042
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 86, 792
Bsp143I GATC 5 cut(s) 542, 552, 703, 904, 997
Bsp1720I GCTNAGC 1 cut(s) 654
BspANI GGCC 3 cut(s) 420, 568, 1042
BspCNI CTCAG 3 cut(s) 242, 667, 937
BspDI ATCGAT 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 554, 768
BspPI GGATC 4 cut(s) 547, 560, 899, 992
BspTNI GGTCTC 1 cut(s) 191
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 3 cut(s) 157, 568, 988
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 90, 375
BssMI GATC 5 cut(s) 542, 552, 703, 904, 997
BssNI GRCGYC 1 cut(s) 735
BssT1I CCWWGG 2 cut(s) 90, 375
Bst4CI ACNGT 4 cut(s) 107, 460, 688, 839
BstACI GRCGYC 1 cut(s) 735
BstAPI GCANNNNNTGC 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 239, 625
BstDEI CTNAG 5 cut(s) 229, 592, 654, 695, 945
BstF5I GGATG 3 cut(s) 164, 622, 934
BstKTI GATC 5 cut(s) 545, 555, 706, 907, 1000
BstMAI GTCTC 2 cut(s) 191, 584
BstMBI GATC 5 cut(s) 542, 552, 703, 904, 997
BstMWI GCNNNNNNNGC 3 cut(s) 64, 310, 629
BstNSI RCATGY 2 cut(s) 304, 1026
BstV1I GCAGC 3 cut(s) 703, 940, 962
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 3 cut(s) 552, 703, 904
BstXI CCANNNNNNTGG 2 cut(s) 563, 779
BstYI RGATCY 3 cut(s) 552, 703, 904
Bsu15I ATCGAT 1 cut(s) 249
BsuRI GGCC 3 cut(s) 420, 568, 1042
BsuTUI ATCGAT 1 cut(s) 249
BtsCI GGATG 3 cut(s) 164, 622, 934
BtsIMutI CAGTG 2 cut(s) 502, 561
Cac8I GCNNGC 2 cut(s) 239, 625
CaiI CAGNNNCTG 2 cut(s) 152, 673
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 566
ClaI ATCGAT 1 cut(s) 249
Csp6I GTAC 3 cut(s) 298, 826, 1035
CviAII CATG 4 cut(s) 51, 301, 897, 1023
CviQI GTAC 3 cut(s) 298, 826, 1035
DdeI CTNAG 5 cut(s) 229, 592, 654, 695, 945
DpnI GATC 5 cut(s) 544, 554, 705, 906, 999
DpnII GATC 5 cut(s) 542, 552, 703, 904, 997
DraI TTTAAA 1 cut(s) 1015
EaeI YGGCCR 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 790
Eco130I CCWWGG 2 cut(s) 90, 375
Eco24I GRGCYC 2 cut(s) 86, 792
Eco31I GGTCTC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 790
Eco57I CTGAAG 1 cut(s) 695
EcoICRI GAGCTC 1 cut(s) 790
EcoT14I CCWWGG 2 cut(s) 90, 375
EcoT22I ATGCAT 2 cut(s) 166, 478
EcoT38I GRGCYC 2 cut(s) 86, 792
ErhI CCWWGG 2 cut(s) 90, 375
FaeI CATG 4 cut(s) 54, 304, 900, 1026
FaqI GGGAC 1 cut(s) 261
FatI CATG 4 cut(s) 50, 300, 896, 1022
FauNDI CATATG 2 cut(s) 160, 210
Fnu4HI GCNGC 3 cut(s) 717, 951, 954
FokI GGATG 3 cut(s) 151, 629, 941
FriOI GRGCYC 2 cut(s) 86, 792
Fsp4HI GCNGC 3 cut(s) 717, 951, 954
FspBI CTAG 3 cut(s) 431, 846, 864
GluI GCNGC 3 cut(s) 717, 951, 954
GsaI CCCAGC 1 cut(s) 608
GsuI CTGGAG 1 cut(s) 1005
HaeIII GGCC 3 cut(s) 420, 568, 1042
HapII CCGG 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 735
Hin1II CATG 4 cut(s) 54, 304, 900, 1026
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 4 cut(s) 5, 137, 225, 380
HpaII CCGG 1 cut(s) 215
HphI GGTGA 2 cut(s) 64, 925
Hpy166II GTNNAC 1 cut(s) 733
Hpy188I TCNGA 5 cut(s) 148, 232, 448, 970, 997
Hpy188III TCNNGA 1 cut(s) 485
Hpy8I GTNNAC 1 cut(s) 733
HpyAV CCTTC 4 cut(s) 289, 431, 670, 918
HpyCH4III ACNGT 4 cut(s) 107, 460, 688, 839
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 9 cut(s) 158, 164, 304, 313, 362, 476, 632, 719, 900
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 310, 629
HpyF3I CTNAG 5 cut(s) 229, 592, 654, 695, 945
HpySE526I ACGT 1 cut(s) 735
Hsp92I GRCGYC 1 cut(s) 735
Hsp92II CATG 4 cut(s) 54, 304, 900, 1026
Kzo9I GATC 5 cut(s) 542, 552, 703, 904, 997
LmnI GCTCC 3 cut(s) 536, 795, 986
Lsp1109I GCAGC 3 cut(s) 703, 940, 962
LweI GCATC 4 cut(s) 173, 352, 360, 485
MaeI CTAG 3 cut(s) 431, 846, 864
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 1 cut(s) 1025
MalI GATC 5 cut(s) 544, 554, 705, 906, 999
MboI GATC 5 cut(s) 542, 552, 703, 904, 997
MboII GAAGA 3 cut(s) 113, 164, 234
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 3 cut(s) 552, 703, 904
MhlI GDGCHC 2 cut(s) 86, 792
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 9 cut(s) 15, 142, 385, 570, 598, 720, 922, 975, 1048
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 4 cut(s) 296, 613, 848, 940
Mox20I TGGCCA 1 cut(s) 420
Mph1103I ATGCAT 2 cut(s) 166, 478
MscI TGGCCA 1 cut(s) 420
MseI TTAA 7 cut(s) 126, 516, 663, 747, 870, 1014, 1051
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 570
MwoI GCNNNNNNNGC 3 cut(s) 64, 310, 629
NdeI CATATG 2 cut(s) 160, 210
NdeII GATC 5 cut(s) 542, 552, 703, 904, 997
NlaIII CATG 4 cut(s) 54, 304, 900, 1026
NlaIV GGNNCC 2 cut(s) 554, 768
NmeAIII GCCGAG 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 1025
NsiI ATGCAT 2 cut(s) 166, 478
NspI RCATGY 2 cut(s) 304, 1026
PfeI GAWTC 2 cut(s) 137, 225
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 3 cut(s) 718, 952, 955
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp124BI GAGCTC 1 cut(s) 792
PspFI CCCAGC 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 554, 768
PspPI GGNCC 1 cut(s) 566
PsrI GAACNNNNNNTAC 2 cut(s) 290, 322
PstNI CAGNNNCTG 2 cut(s) 152, 673
PsuI RGATCY 3 cut(s) 552, 703, 904
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 3 cut(s) 299, 827, 1036
RsaNI GTAC 3 cut(s) 298, 826, 1035
SacI GAGCTC 1 cut(s) 792
SaqAI TTAA 7 cut(s) 126, 516, 663, 747, 870, 1014, 1051
SatI GCNGC 3 cut(s) 717, 951, 954
Sau3AI GATC 5 cut(s) 542, 552, 703, 904, 997
Sau96I GGNCC 1 cut(s) 566
ScaI AGTACT 1 cut(s) 1036
SchI GAGTC 1 cut(s) 389
SduI GDGCHC 2 cut(s) 86, 792
SfaNI GCATC 4 cut(s) 173, 352, 360, 485
Sse9I AATT 9 cut(s) 15, 142, 385, 570, 598, 720, 922, 975, 1048
SspI AATATT 4 cut(s) 292, 357, 514, 885
SspMI CTAG 3 cut(s) 431, 846, 864
SstI GAGCTC 1 cut(s) 792
StyI CCWWGG 2 cut(s) 90, 375
TaaI ACNGT 4 cut(s) 107, 460, 688, 839
TaiI ACGT 1 cut(s) 738
TaqI TCGA 2 cut(s) 249, 383
TasI AATT 9 cut(s) 15, 142, 385, 570, 598, 720, 922, 975, 1048
TatI WGTACW 3 cut(s) 297, 825, 1034
TfiI GAWTC 2 cut(s) 137, 225
Tru1I TTAA 7 cut(s) 126, 516, 663, 747, 870, 1014, 1051
Tru9I TTAA 7 cut(s) 126, 516, 663, 747, 870, 1014, 1051
TscAI CASTG 2 cut(s) 502, 568
TseFI GTSAC 1 cut(s) 1025
TseI GCWGC 3 cut(s) 716, 950, 953
Tsp45I GTSAC 1 cut(s) 1025
TspDTI ATGAA 2 cut(s) 197, 660
TspRI CASTG 2 cut(s) 502, 568
Van91I CCANNNNNTGG 1 cut(s) 191
XapI RAATTY 3 cut(s) 142, 385, 975
XceI RCATGY 2 cut(s) 304, 1026
XcmI CCANNNNNNNNNTGG 1 cut(s) 887
XspI CTAG 3 cut(s) 431, 846, 864
ZraI GACGTC 1 cut(s) 736
ZrmI AGTACT 1 cut(s) 1036
Zsp2I ATGCAT 2 cut(s) 166, 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.